data_LGN # _chem_comp.id LGN _chem_comp.name "N-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C62 H117 N O18" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Isoglobotrihexosylceramide _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-13 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1164.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LGN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RZC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LGN C1 C1 C 0 1 N N R 22.968 27.886 -20.003 -4.990 0.113 0.156 C1 LGN 1 LGN O1 O1 O 0 1 N N N 24.106 28.770 -19.837 -4.228 -1.029 -0.239 O1 LGN 2 LGN C2 C2 C 0 1 N N R 21.593 28.441 -19.599 -5.481 0.855 -1.089 C2 LGN 3 LGN O2 O2 O 0 1 N N N 21.635 29.069 -18.315 -4.359 1.328 -1.837 O2 LGN 4 LGN C3 C3 C 0 1 N N R 20.595 27.281 -19.565 -6.346 2.044 -0.658 C3 LGN 5 LGN O3 O3 O 0 1 N N N 19.288 27.776 -19.278 -6.869 2.699 -1.816 O3 LGN 6 LGN C4 C4 C 0 1 N N S 20.569 26.498 -20.893 -7.502 1.533 0.207 C4 LGN 7 LGN O4 O4 O 0 1 N N N 20.116 25.165 -20.583 -8.274 2.640 0.675 O4 LGN 8 LGN C5 C5 C 0 1 N N R 21.939 26.392 -21.609 -6.932 0.765 1.403 C5 LGN 9 LGN O5 O5 O 0 1 N N N 22.841 27.519 -21.397 -6.113 -0.308 0.933 O5 LGN 10 LGN C6 C6 C 0 1 N N N 21.684 26.259 -23.118 -8.081 0.199 2.240 C6 LGN 11 LGN O6 O6 O 0 1 N N N 22.919 26.016 -23.798 -7.555 -0.417 3.417 O6 LGN 12 LGN CAA CAA C 0 1 N N N 34.659 33.395 -7.567 5.132 -19.923 0.668 CAA LGN 13 LGN CAB CAB C 0 1 N N N 34.574 32.243 -8.568 4.312 -18.815 1.333 CAB LGN 14 LGN CAC CAC C 0 1 N N N 34.386 30.905 -7.851 3.862 -17.808 0.273 CAC LGN 15 LGN CAD CAD C 0 1 N N N 33.977 29.807 -8.835 3.042 -16.701 0.938 CAD LGN 16 LGN CAE CAE C 0 1 N N N 33.201 28.696 -8.127 2.591 -15.693 -0.122 CAE LGN 17 LGN CAF CAF C 0 1 N N N 33.492 27.335 -8.760 1.771 -14.586 0.543 CAF LGN 18 LGN CAG CAG C 0 1 N N N 32.251 26.776 -9.456 1.321 -13.578 -0.517 CAG LGN 19 LGN CAH CAH C 0 1 N N N 32.489 26.631 -10.959 0.501 -12.471 0.148 CAH LGN 20 LGN CAI CAI C 0 1 N N N 31.880 25.332 -11.486 0.050 -11.464 -0.912 CAI LGN 21 LGN CAJ CAJ C 0 1 N N N 30.730 25.620 -12.451 -0.769 -10.356 -0.247 CAJ LGN 22 LGN CAK CAK C 0 1 N N N 31.100 25.232 -13.885 -1.220 -9.349 -1.307 CAK LGN 23 LGN CAL CAL C 0 1 N N N 29.851 25.133 -14.764 -2.040 -8.241 -0.642 CAL LGN 24 LGN CAM CAM C 0 1 N N N 29.693 26.379 -15.636 -2.490 -7.234 -1.702 CAM LGN 25 LGN CAN CAN C 0 1 N N N 28.365 26.780 -15.702 -3.298 -6.143 -1.047 CAN LGN 26 LGN CAO CAO C 0 1 N N N 27.899 27.443 -16.830 -2.953 -4.889 -1.202 CAO LGN 27 LGN CAP CAP C 0 1 N N R 26.435 27.882 -16.891 -3.760 -3.798 -0.548 CAP LGN 28 LGN OAQ OAQ O 0 1 N N N 26.306 29.199 -16.342 -4.771 -4.383 0.276 OAQ LGN 29 LGN CAR CAR C 0 1 N N S 25.936 27.838 -18.342 -2.840 -2.930 0.313 CAR LGN 30 LGN NAS NAS N 0 1 N N N 25.649 26.435 -18.686 -1.718 -2.453 -0.499 NAS LGN 31 LGN CAT CAT C 0 1 N N N 26.053 25.848 -19.815 -0.554 -2.118 0.091 CAT LGN 32 LGN OAU OAU O 0 1 N N N 26.696 26.406 -20.705 -0.435 -2.211 1.294 OAU LGN 33 LGN CAV CAV C 0 1 N N N 25.643 24.377 -19.957 0.601 -1.628 -0.745 CAV LGN 34 LGN CAW CAW C 0 1 N N N 26.380 23.483 -18.952 1.793 -1.319 0.163 CAW LGN 35 LGN CAX CAX C 0 1 N N N 27.595 22.810 -19.592 2.964 -0.821 -0.685 CAX LGN 36 LGN CAY CAY C 0 1 N N N 28.592 22.341 -18.529 4.156 -0.512 0.223 CAY LGN 37 LGN CAZ CAZ C 0 1 N N N 29.838 21.739 -19.183 5.328 -0.014 -0.625 CAZ LGN 38 LGN CBA CBA C 0 1 N N N 30.749 21.073 -18.148 6.520 0.294 0.283 CBA LGN 39 LGN CBB CBB C 0 1 N N N 32.217 21.406 -18.424 7.692 0.793 -0.565 CBB LGN 40 LGN CBC CBC C 0 1 N N N 33.126 20.200 -18.180 8.884 1.101 0.343 CBC LGN 41 LGN CBD CBD C 0 1 N N N 34.600 20.598 -18.301 10.056 1.599 -0.505 CBD LGN 42 LGN CBE CBE C 0 1 N N N 35.241 20.002 -19.556 11.248 1.908 0.403 CBE LGN 43 LGN CBF CBF C 0 1 N N N 35.255 21.008 -20.711 12.420 2.406 -0.445 CBF LGN 44 LGN CBG CBG C 0 1 N N N 36.108 20.493 -21.874 13.612 2.714 0.463 CBG LGN 45 LGN CBH CBH C 0 1 N N N 35.347 20.571 -23.202 14.784 3.213 -0.385 CBH LGN 46 LGN CBI CBI C 0 1 N N N 35.868 19.534 -24.201 15.976 3.521 0.523 CBI LGN 47 LGN CBJ CBJ C 0 1 N N N 34.982 18.284 -24.215 17.148 4.019 -0.325 CBJ LGN 48 LGN CBK CBK C 0 1 N N N 35.002 17.609 -25.588 18.340 4.328 0.583 CBK LGN 49 LGN CBL CBL C 0 1 N N N 35.042 16.084 -25.454 19.512 4.826 -0.265 CBL LGN 50 LGN CBM CBM C 0 1 N N N 33.705 15.460 -25.864 20.704 5.135 0.643 CBM LGN 51 LGN CBN CBN C 0 1 N N N 33.261 14.408 -24.847 21.876 5.633 -0.205 CBN LGN 52 LGN CBO CBO C 0 1 N N N 31.782 14.571 -24.490 23.068 5.941 0.703 CBO LGN 53 LGN CBP CBP C 0 1 N N N 31.427 13.747 -23.249 24.240 6.439 -0.146 CBP LGN 54 LGN CBQ CBQ C 0 1 N N N 30.764 14.620 -22.181 25.432 6.748 0.763 CBQ LGN 55 LGN CBR CBR C 0 1 N N N 31.119 14.142 -20.771 26.604 7.246 -0.086 CBR LGN 56 LGN CBS CBS C 0 1 N N N 31.852 15.236 -19.988 27.796 7.555 0.823 CBS LGN 57 LGN CBT CBT C 0 1 N N N 30.961 15.831 -18.894 28.968 8.052 -0.026 CBT LGN 58 LGN CBU CBU C 0 1 N N N 24.666 28.679 -18.506 -3.626 -1.732 0.850 CBU LGN 59 LGN CBX CBX C 0 1 N N R 16.935 20.515 -21.926 -13.348 5.770 -0.441 CBX LGN 60 LGN OBY OBY O 0 1 N N N 18.149 20.150 -22.657 -14.171 4.725 0.082 OBY LGN 61 LGN CBZ CBZ C 0 1 N N R 16.256 19.258 -21.350 -13.920 7.126 -0.019 CBZ LGN 62 LGN OCA OCA O 0 1 N N N 15.132 19.636 -20.548 -13.067 8.171 -0.491 OCA LGN 63 LGN CCB CCB C 0 1 N N S 17.236 18.420 -20.503 -14.003 7.184 1.509 CCB LGN 64 LGN OCC OCC O 0 1 N N N 16.615 17.186 -20.129 -14.603 8.417 1.909 OCC LGN 65 LGN CCD CCD C 0 1 N N R 18.558 18.140 -21.246 -14.855 6.013 2.008 CCD LGN 66 LGN OCE OCE O 0 1 N N N 18.347 17.153 -22.265 -16.187 6.145 1.508 OCE LGN 67 LGN CCF CCF C 0 1 N N R 19.141 19.431 -21.859 -14.247 4.700 1.508 CCF LGN 68 LGN CCH CCH C 0 1 N N S 18.797 24.857 -21.088 -9.346 3.010 -0.194 CCH LGN 69 LGN CCI CCI C 0 1 N N R 18.681 23.325 -21.004 -10.176 4.117 0.460 CCI LGN 70 LGN OCJ OCJ O 0 1 N N N 19.600 22.724 -21.922 -10.756 3.626 1.671 OCJ LGN 71 LGN OCK OCK O 0 1 N N N 17.765 25.519 -20.301 -8.814 3.484 -1.433 OCK LGN 72 LGN CCL CCL C 0 1 N N R 16.413 25.159 -20.700 -9.807 3.858 -2.390 CCL LGN 73 LGN CCM CCM C 0 1 N N N 15.404 25.949 -19.849 -9.124 4.321 -3.679 CCM LGN 74 LGN OCN OCN O 0 1 N N N 15.081 27.179 -20.498 -8.426 3.223 -4.268 OCN LGN 75 LGN CCO CCO C 0 1 N N S 16.167 23.641 -20.566 -10.655 5.000 -1.823 CCO LGN 76 LGN OCP OCP O 0 1 N N N 16.118 23.261 -19.184 -9.827 6.141 -1.592 OCP LGN 77 LGN CCQ CCQ C 0 1 N N S 17.254 22.822 -21.292 -11.286 4.549 -0.502 CCQ LGN 78 LGN OCR OCR O 0 1 N N N 17.201 21.451 -20.851 -12.021 5.633 0.071 OCR LGN 79 LGN CDA CDA C 0 1 N N N 20.363 19.135 -22.738 -15.127 3.529 1.952 CDA LGN 80 LGN ODA ODA O 0 1 N N N 21.183 18.288 -22.391 -14.495 2.298 1.597 ODA LGN 81 LGN H1 H1 H 0 1 N N N 23.198 27.053 -19.322 -4.365 0.778 0.753 H1 LGN 82 LGN H2 H2 H 0 1 N N N 21.289 29.201 -20.334 -6.072 0.179 -1.706 H2 LGN 83 LGN HO2 HO2 H 0 1 N N N 20.772 29.400 -18.096 -3.764 0.627 -2.139 HO2 LGN 84 LGN H3 H3 H 0 1 N N N 20.921 26.589 -18.774 -5.741 2.746 -0.084 H3 LGN 85 LGN HO3 HO3 H 0 1 N N N 18.672 27.053 -19.258 -6.191 3.042 -2.414 HO3 LGN 86 LGN H4 H4 H 0 1 N N N 19.909 27.044 -21.584 -8.135 0.871 -0.384 H4 LGN 87 LGN H5 H5 H 0 1 N N N 22.441 25.516 -21.173 -6.333 1.438 2.016 H5 LGN 88 LGN H6 H6 H 0 1 N N N 20.996 25.420 -23.299 -8.756 1.007 2.524 H6 LGN 89 LGN H6A H6A H 0 1 N N N 21.237 27.190 -23.496 -8.627 -0.541 1.656 H6A LGN 90 LGN HO6 HO6 H 0 1 N N N 22.757 25.934 -24.730 -8.229 -0.798 3.997 HO6 LGN 91 LGN HAA HAA H 0 1 N N N 34.794 34.343 -8.109 6.007 -19.487 0.185 HAA LGN 92 LGN HAAA HAAA H 0 0 N N N 33.731 33.438 -6.978 5.453 -20.641 1.423 HAAA LGN 93 LGN HAAB HAAB H 0 0 N N N 35.514 33.233 -6.894 4.520 -20.430 -0.078 HAAB LGN 94 LGN HAB HAB H 0 1 N N N 33.717 32.413 -9.237 3.437 -19.251 1.815 HAB LGN 95 LGN HABA HABA H 0 0 N N N 35.506 32.208 -9.152 4.924 -18.309 2.079 HABA LGN 96 LGN HAC HAC H 0 1 N N N 35.334 30.620 -7.372 4.736 -17.373 -0.210 HAC LGN 97 LGN HACA HACA H 0 0 N N N 33.599 31.015 -7.091 3.250 -18.315 -0.473 HACA LGN 98 LGN HAD HAD H 0 1 N N N 33.339 30.247 -9.616 2.167 -17.136 1.420 HAD LGN 99 LGN HADA HADA H 0 0 N N N 34.883 29.377 -9.287 3.654 -16.194 1.684 HADA LGN 100 LGN HAE HAE H 0 1 N N N 33.500 28.669 -7.069 3.466 -15.258 -0.605 HAE LGN 101 LGN HAEA HAEA H 0 0 N N N 32.124 28.905 -8.208 1.979 -16.200 -0.868 HAEA LGN 102 LGN HAF HAF H 0 1 N N N 34.296 27.451 -9.502 0.896 -15.021 1.026 HAF LGN 103 LGN HAFA HAFA H 0 0 N N N 33.806 26.634 -7.972 2.383 -14.079 1.289 HAFA LGN 104 LGN HAG HAG H 0 1 N N N 32.018 25.788 -9.033 2.196 -13.143 -1.000 HAG LGN 105 LGN HAGA HAGA H 0 0 N N N 31.408 27.463 -9.291 0.709 -14.085 -1.263 HAGA LGN 106 LGN HAH HAH H 0 1 N N N 32.023 27.481 -11.479 -0.374 -12.906 0.631 HAH LGN 107 LGN HAHA HAHA H 0 0 N N N 33.572 26.622 -11.150 1.113 -11.964 0.894 HAHA LGN 108 LGN HAI HAI H 0 1 N N N 32.657 24.761 -12.016 0.925 -11.028 -1.395 HAI LGN 109 LGN HAIA HAIA H 0 0 N N N 31.497 24.746 -10.637 -0.562 -11.970 -1.658 HAIA LGN 110 LGN HAJ HAJ H 0 1 N N N 29.850 25.038 -12.140 -1.644 -10.792 0.236 HAJ LGN 111 LGN HAJA HAJA H 0 0 N N N 30.500 26.695 -12.421 -0.157 -9.849 0.499 HAJA LGN 112 LGN HAK HAK H 0 1 N N N 31.771 25.998 -14.301 -0.345 -8.913 -1.789 HAK LGN 113 LGN HAKA HAKA H 0 0 N N N 31.607 24.256 -13.872 -1.832 -9.856 -2.053 HAKA LGN 114 LGN HAL HAL H 0 1 N N N 29.941 24.251 -15.415 -2.915 -8.677 -0.159 HAL LGN 115 LGN HALA HALA H 0 0 N N N 28.966 25.035 -14.118 -1.428 -7.734 0.104 HALA LGN 116 LGN HAM HAM H 0 1 N N N 30.291 27.195 -15.203 -1.615 -6.799 -2.184 HAM LGN 117 LGN HAMA HAMA H 0 0 N N N 30.047 26.150 -16.652 -3.102 -7.741 -2.448 HAMA LGN 118 LGN HAN HAN H 0 1 N N N 27.696 26.577 -14.878 -4.161 -6.395 -0.449 HAN LGN 119 LGN HAO HAO H 0 1 N N N 28.564 27.647 -17.656 -2.089 -4.637 -1.800 HAO LGN 120 LGN HAP HAP H 0 1 N N N 25.817 27.194 -16.296 -4.228 -3.182 -1.315 HAP LGN 121 LGN HOAQ HOAQ H 0 0 N N N 25.397 29.471 -16.380 -4.425 -4.885 1.026 HOAQ LGN 122 LGN HAR HAR H 0 1 N N N 26.707 28.252 -19.009 -2.460 -3.519 1.148 HAR LGN 123 LGN HNAS HNAS H 0 0 N N N 25.120 25.890 -18.035 -1.814 -2.378 -1.462 HNAS LGN 124 LGN HAV HAV H 0 1 N N N 24.561 24.293 -19.777 0.881 -2.397 -1.464 HAV LGN 125 LGN HAVA HAVA H 0 0 N N N 25.886 24.039 -20.975 0.306 -0.723 -1.277 HAVA LGN 126 LGN HAW HAW H 0 1 N N N 26.720 24.102 -18.108 1.512 -0.549 0.883 HAW LGN 127 LGN HAWA HAWA H 0 0 N N N 25.689 22.705 -18.596 2.088 -2.223 0.696 HAWA LGN 128 LGN HAX HAX H 0 1 N N N 27.256 21.939 -20.171 3.245 -1.590 -1.404 HAX LGN 129 LGN HAXA HAXA H 0 0 N N N 28.094 23.532 -20.255 2.669 0.083 -1.217 HAXA LGN 130 LGN HAY HAY H 0 1 N N N 28.890 23.201 -17.912 3.876 0.257 0.942 HAY LGN 131 LGN HAYA HAYA H 0 0 N N N 28.113 21.577 -17.899 4.452 -1.416 0.756 HAYA LGN 132 LGN HAZ HAZ H 0 1 N N N 29.523 20.983 -19.917 5.609 -0.784 -1.344 HAZ LGN 133 LGN HAZA HAZA H 0 0 N N N 30.398 22.542 -19.684 5.033 0.890 -1.157 HAZA LGN 134 LGN HBA HBA H 0 1 N N N 30.480 21.438 -17.146 6.240 1.064 1.003 HBA LGN 135 LGN HBAA HBAA H 0 0 N N N 30.613 19.983 -18.198 6.815 -0.610 0.816 HBAA LGN 136 LGN HBB HBB H 0 1 N N N 32.317 21.717 -19.474 7.973 0.023 -1.284 HBB LGN 137 LGN HBBA HBBA H 0 0 N N N 32.526 22.222 -17.755 7.397 1.697 -1.097 HBBA LGN 138 LGN HBC HBC H 0 1 N N N 32.941 19.810 -17.168 8.604 1.871 1.062 HBC LGN 139 LGN HBCA HBCA H 0 0 N N N 32.901 19.424 -18.927 9.179 0.197 0.875 HBCA LGN 140 LGN HBD HBD H 0 1 N N N 34.668 21.695 -18.355 10.337 0.830 -1.224 HBD LGN 141 LGN HBDA HBDA H 0 0 N N N 35.141 20.228 -17.417 9.761 2.503 -1.037 HBDA LGN 142 LGN HBE HBE H 0 1 N N N 36.277 19.715 -19.323 10.967 2.677 1.122 HBE LGN 143 LGN HBEA HBEA H 0 0 N N N 34.664 19.118 -19.863 11.543 1.003 0.935 HBEA LGN 144 LGN HBF HBF H 0 1 N N N 34.225 21.163 -21.064 12.701 1.636 -1.164 HBF LGN 145 LGN HBFA HBFA H 0 0 N N N 35.675 21.959 -20.352 12.125 3.310 -0.977 HBFA LGN 146 LGN HBG HBG H 0 1 N N N 37.016 21.109 -21.948 13.331 3.484 1.182 HBG LGN 147 LGN HBGA HBGA H 0 0 N N N 36.377 19.444 -21.680 13.907 1.810 0.995 HBGA LGN 148 LGN HBH HBH H 0 1 N N N 34.280 20.379 -23.013 15.065 2.443 -1.104 HBH LGN 149 LGN HBHA HBHA H 0 0 N N N 35.479 21.576 -23.630 14.489 4.117 -0.917 HBHA LGN 150 LGN HBI HBI H 0 1 N N N 35.872 19.979 -25.207 15.695 4.291 1.242 HBI LGN 151 LGN HBIA HBIA H 0 0 N N N 36.889 19.244 -23.913 16.271 2.617 1.055 HBIA LGN 152 LGN HBJ HBJ H 0 1 N N N 35.356 17.574 -23.463 17.429 3.250 -1.044 HBJ LGN 153 LGN HBJA HBJA H 0 0 N N N 33.949 18.576 -23.976 16.853 4.924 -0.857 HBJA LGN 154 LGN HBK HBK H 0 1 N N N 34.094 17.895 -26.139 18.059 5.097 1.302 HBK LGN 155 LGN HBKA HBKA H 0 0 N N N 35.896 17.942 -26.136 18.635 3.424 1.115 HBKA LGN 156 LGN HBL HBL H 0 1 N N N 35.835 15.689 -26.106 19.793 4.056 -0.984 HBL LGN 157 LGN HBLA HBLA H 0 0 N N N 35.251 15.823 -24.406 19.217 5.730 -0.798 HBLA LGN 158 LGN HBM HBM H 0 1 N N N 32.942 16.251 -25.918 20.423 5.904 1.362 HBM LGN 159 LGN HBMA HBMA H 0 0 N N N 33.819 14.982 -26.848 20.999 4.230 1.175 HBMA LGN 160 LGN HBN HBN H 0 1 N N N 33.415 13.408 -25.279 22.157 4.863 -0.924 HBN LGN 161 LGN HBNA HBNA H 0 0 N N N 33.862 14.521 -23.933 21.581 6.537 -0.738 HBNA LGN 162 LGN HBO HBO H 0 1 N N N 31.577 15.632 -24.286 22.787 6.711 1.422 HBO LGN 163 LGN HBOA HBOA H 0 0 N N N 31.169 14.227 -25.336 23.363 5.037 1.235 HBOA LGN 164 LGN HBP HBP H 0 1 N N N 30.731 12.946 -23.539 24.521 5.670 -0.865 HBP LGN 165 LGN HBPA HBPA H 0 0 N N N 32.348 13.312 -22.834 23.945 7.344 -0.678 HBPA LGN 166 LGN HBQ HBQ H 0 1 N N N 31.112 15.656 -22.303 25.151 7.517 1.482 HBQ LGN 167 LGN HBQA HBQA H 0 0 N N N 29.673 14.570 -22.309 25.727 5.844 1.295 HBQA LGN 168 LGN HBR HBR H 0 1 N N N 30.193 13.881 -20.238 26.885 6.476 -0.805 HBR LGN 169 LGN HBRA HBRA H 0 0 N N N 31.771 13.259 -20.847 26.309 8.150 -0.618 HBRA LGN 170 LGN HBS HBS H 0 1 N N N 32.746 14.799 -19.519 27.515 8.324 1.542 HBS LGN 171 LGN HBSA HBSA H 0 0 N N N 32.143 16.037 -20.684 28.091 6.650 1.355 HBSA LGN 172 LGN HBT HBT H 0 1 N N N 31.516 16.611 -18.352 29.817 8.272 0.621 HBT LGN 173 LGN HBTA HBTA H 0 0 N N N 30.063 16.271 -19.352 29.248 7.283 -0.745 HBTA LGN 174 LGN HBTB HBTB H 0 0 N N N 30.664 15.038 -18.192 28.673 8.957 -0.558 HBTB LGN 175 LGN HBU HBU H 0 1 N N N 24.914 29.703 -18.190 -2.950 -1.064 1.384 HBU LGN 176 LGN HBUA HBUA H 0 0 N N N 23.896 28.229 -17.862 -4.403 -2.082 1.530 HBUA LGN 177 LGN HBX HBX H 0 1 N N N 16.265 21.007 -22.647 -13.327 5.707 -1.529 HBX LGN 178 LGN HBZ HBZ H 0 1 N N N 15.921 18.640 -22.196 -14.916 7.249 -0.444 HBZ LGN 179 LGN HOCA HOCA H 0 0 N N N 14.718 18.857 -20.196 -12.965 8.191 -1.453 HOCA LGN 180 LGN HCB HCB H 0 1 N N N 17.483 19.004 -19.605 -13.000 7.113 1.931 HCB LGN 181 LGN HOCC HOCC H 0 0 N N N 17.220 16.672 -19.608 -14.119 9.203 1.620 HOCC LGN 182 LGN HCD HCD H 0 1 N N N 19.287 17.756 -20.518 -14.874 6.015 3.098 HCD LGN 183 LGN HOCE HOCE H 0 0 N N N 19.165 16.985 -22.718 -16.632 6.959 1.782 HOCE LGN 184 LGN HCF HCF H 0 1 N N N 19.446 20.062 -21.011 -13.247 4.581 1.924 HCF LGN 185 LGN HCH HCH H 0 1 N N N 18.657 25.215 -22.118 -9.979 2.142 -0.380 HCH LGN 186 LGN HCI HCI H 0 1 N N N 18.925 23.034 -19.972 -9.535 4.970 0.683 HCI LGN 187 LGN HOCJ HOCJ H 0 0 N N N 19.528 21.778 -21.870 -10.117 3.237 2.284 HOCJ LGN 188 LGN HCL HCL H 0 1 N N N 16.281 25.417 -21.761 -10.446 3.002 -2.604 HCL LGN 189 LGN HCM HCM H 0 1 N N N 14.489 25.353 -19.722 -9.877 4.690 -4.376 HCM LGN 190 LGN HCMA HCMA H 0 0 N N N 15.845 26.162 -18.864 -8.419 5.120 -3.450 HCMA LGN 191 LGN HOCN HOCN H 0 0 N N N 14.458 27.663 -19.969 -7.968 3.444 -5.091 HOCN LGN 192 LGN HCO HCO H 0 1 N N N 15.199 23.422 -21.040 -11.440 5.257 -2.534 HCO LGN 193 LGN HOCP HOCP H 0 0 N N N 15.966 22.326 -19.118 -9.391 6.478 -2.386 HOCP LGN 194 LGN HCQ HCQ H 0 1 N N N 17.048 22.927 -22.367 -11.957 3.709 -0.686 HCQ LGN 195 LGN HDA HDA H 0 1 N N N 19.966 18.795 -23.706 -15.266 3.568 3.032 HDA LGN 196 LGN H116 H116 H 0 0 N N N 20.918 20.082 -22.816 -16.096 3.596 1.458 H116 LGN 197 LGN H117 H117 H 0 0 N N N 21.872 18.228 -23.042 -14.998 1.511 1.849 H117 LGN 198 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LGN C1 O1 SING N N 1 LGN C1 C2 SING N N 2 LGN C1 H1 SING N N 3 LGN O1 CBU SING N N 4 LGN C2 C3 SING N N 5 LGN C2 O2 SING N N 6 LGN C2 H2 SING N N 7 LGN O2 HO2 SING N N 8 LGN C3 O3 SING N N 9 LGN C3 H3 SING N N 10 LGN O3 HO3 SING N N 11 LGN C4 C3 SING N N 12 LGN C4 O4 SING N N 13 LGN C4 H4 SING N N 14 LGN C5 C4 SING N N 15 LGN C5 O5 SING N N 16 LGN C5 H5 SING N N 17 LGN O5 C1 SING N N 18 LGN C6 C5 SING N N 19 LGN C6 H6 SING N N 20 LGN C6 H6A SING N N 21 LGN O6 C6 SING N N 22 LGN O6 HO6 SING N N 23 LGN CAA HAA SING N N 24 LGN CAA HAAA SING N N 25 LGN CAA HAAB SING N N 26 LGN CAB CAA SING N N 27 LGN CAB CAC SING N N 28 LGN CAB HAB SING N N 29 LGN CAB HABA SING N N 30 LGN CAC HAC SING N N 31 LGN CAC HACA SING N N 32 LGN CAD CAC SING N N 33 LGN CAD CAE SING N N 34 LGN CAD HAD SING N N 35 LGN CAD HADA SING N N 36 LGN CAE HAE SING N N 37 LGN CAE HAEA SING N N 38 LGN CAF CAE SING N N 39 LGN CAF HAF SING N N 40 LGN CAF HAFA SING N N 41 LGN CAG CAF SING N N 42 LGN CAG HAG SING N N 43 LGN CAG HAGA SING N N 44 LGN CAH CAG SING N N 45 LGN CAH HAH SING N N 46 LGN CAH HAHA SING N N 47 LGN CAI CAH SING N N 48 LGN CAI HAI SING N N 49 LGN CAI HAIA SING N N 50 LGN CAJ CAI SING N N 51 LGN CAJ HAJ SING N N 52 LGN CAJ HAJA SING N N 53 LGN CAK CAJ SING N N 54 LGN CAK HAK SING N N 55 LGN CAK HAKA SING N N 56 LGN CAL CAK SING N N 57 LGN CAL HAL SING N N 58 LGN CAL HALA SING N N 59 LGN CAM CAL SING N N 60 LGN CAM HAM SING N N 61 LGN CAM HAMA SING N N 62 LGN CAN CAM SING N N 63 LGN CAN HAN SING N N 64 LGN CAO CAN DOUB N E 65 LGN CAO HAO SING N N 66 LGN CAP CAO SING N N 67 LGN CAP OAQ SING N N 68 LGN CAP HAP SING N N 69 LGN OAQ HOAQ SING N N 70 LGN CAR CAP SING N N 71 LGN CAR HAR SING N N 72 LGN NAS CAR SING N N 73 LGN NAS HNAS SING N N 74 LGN CAT NAS SING N N 75 LGN OAU CAT DOUB N N 76 LGN CAV CAT SING N N 77 LGN CAV CAW SING N N 78 LGN CAV HAV SING N N 79 LGN CAV HAVA SING N N 80 LGN CAW HAW SING N N 81 LGN CAW HAWA SING N N 82 LGN CAX CAW SING N N 83 LGN CAX CAY SING N N 84 LGN CAX HAX SING N N 85 LGN CAX HAXA SING N N 86 LGN CAY HAY SING N N 87 LGN CAY HAYA SING N N 88 LGN CAZ CAY SING N N 89 LGN CAZ CBA SING N N 90 LGN CAZ HAZ SING N N 91 LGN CAZ HAZA SING N N 92 LGN CBA HBA SING N N 93 LGN CBA HBAA SING N N 94 LGN CBB CBA SING N N 95 LGN CBB CBC SING N N 96 LGN CBB HBB SING N N 97 LGN CBB HBBA SING N N 98 LGN CBC HBC SING N N 99 LGN CBC HBCA SING N N 100 LGN CBD CBC SING N N 101 LGN CBD HBD SING N N 102 LGN CBD HBDA SING N N 103 LGN CBE CBD SING N N 104 LGN CBE HBE SING N N 105 LGN CBE HBEA SING N N 106 LGN CBF CBE SING N N 107 LGN CBF HBF SING N N 108 LGN CBF HBFA SING N N 109 LGN CBG CBF SING N N 110 LGN CBG HBG SING N N 111 LGN CBG HBGA SING N N 112 LGN CBH CBG SING N N 113 LGN CBH HBH SING N N 114 LGN CBH HBHA SING N N 115 LGN CBI CBH SING N N 116 LGN CBI HBI SING N N 117 LGN CBI HBIA SING N N 118 LGN CBJ CBI SING N N 119 LGN CBJ HBJ SING N N 120 LGN CBJ HBJA SING N N 121 LGN CBK CBJ SING N N 122 LGN CBK CBL SING N N 123 LGN CBK HBK SING N N 124 LGN CBK HBKA SING N N 125 LGN CBL HBL SING N N 126 LGN CBL HBLA SING N N 127 LGN CBM CBL SING N N 128 LGN CBM CBN SING N N 129 LGN CBM HBM SING N N 130 LGN CBM HBMA SING N N 131 LGN CBN CBO SING N N 132 LGN CBN HBN SING N N 133 LGN CBN HBNA SING N N 134 LGN CBO CBP SING N N 135 LGN CBO HBO SING N N 136 LGN CBO HBOA SING N N 137 LGN CBP CBQ SING N N 138 LGN CBP HBP SING N N 139 LGN CBP HBPA SING N N 140 LGN CBQ CBR SING N N 141 LGN CBQ HBQ SING N N 142 LGN CBQ HBQA SING N N 143 LGN CBR CBS SING N N 144 LGN CBR HBR SING N N 145 LGN CBR HBRA SING N N 146 LGN CBS CBT SING N N 147 LGN CBS HBS SING N N 148 LGN CBS HBSA SING N N 149 LGN CBT HBT SING N N 150 LGN CBT HBTA SING N N 151 LGN CBT HBTB SING N N 152 LGN CBU CAR SING N N 153 LGN CBU HBU SING N N 154 LGN CBU HBUA SING N N 155 LGN CBX CBZ SING N N 156 LGN CBX OCR SING N N 157 LGN CBX HBX SING N N 158 LGN OBY CBX SING N N 159 LGN OBY CCF SING N N 160 LGN CBZ OCA SING N N 161 LGN CBZ CCB SING N N 162 LGN CBZ HBZ SING N N 163 LGN OCA HOCA SING N N 164 LGN CCB OCC SING N N 165 LGN CCB HCB SING N N 166 LGN OCC HOCC SING N N 167 LGN CCD CCB SING N N 168 LGN CCD HCD SING N N 169 LGN OCE CCD SING N N 170 LGN OCE HOCE SING N N 171 LGN CCF CCD SING N N 172 LGN CCF HCF SING N N 173 LGN CCH O4 SING N N 174 LGN CCH CCI SING N N 175 LGN CCH OCK SING N N 176 LGN CCH HCH SING N N 177 LGN CCI HCI SING N N 178 LGN OCJ CCI SING N N 179 LGN OCJ HOCJ SING N N 180 LGN CCL OCK SING N N 181 LGN CCL CCO SING N N 182 LGN CCL CCM SING N N 183 LGN CCL HCL SING N N 184 LGN CCM HCM SING N N 185 LGN CCM HCMA SING N N 186 LGN OCN CCM SING N N 187 LGN OCN HOCN SING N N 188 LGN CCO OCP SING N N 189 LGN CCO HCO SING N N 190 LGN OCP HOCP SING N N 191 LGN CCQ CCI SING N N 192 LGN CCQ CCO SING N N 193 LGN CCQ OCR SING N N 194 LGN CCQ HCQ SING N N 195 LGN CDA CCF SING N N 196 LGN CDA ODA SING N N 197 LGN CDA HDA SING N N 198 LGN CDA H116 SING N N 199 LGN ODA H117 SING N N 200 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LGN SMILES ACDLabs 12.01 "O=C(NC(COC3OC(C(OC2OC(CO)C(O)C(OC1OC(CO)C(O)C(O)C1O)C2O)C(O)C3O)CO)C(O)/C=C/CCCCCCCCCCCCC)CCCCCCCCCCCCCCCCCCCCCCCCC" LGN SMILES_CANONICAL CACTVS 3.370 "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)\C=C\CCCCCCCCCCCCC" LGN SMILES CACTVS 3.370 "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[CH](CO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]2O)[CH](O)[CH]1O)[CH](O)C=CCCCCCCCCCCCCC" LGN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O)[C@@H](/C=C/CCCCCCCCCCCCC)O" LGN SMILES "OpenEye OEToolkits" 1.7.2 "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)NC(COC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)OC3C(C(C(C(O3)CO)O)O)O)O)O)O)C(C=CCCCCCCCCCCCCC)O" LGN InChI InChI 1.03 "InChI=1S/C62H117NO18/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-26-28-30-32-34-36-38-40-50(68)63-45(46(67)39-37-35-33-31-29-27-16-14-12-10-8-6-4-2)44-76-60-56(74)54(72)58(49(43-66)79-60)80-62-57(75)59(52(70)48(42-65)78-62)81-61-55(73)53(71)51(69)47(41-64)77-61/h37,39,45-49,51-62,64-67,69-75H,3-36,38,40-44H2,1-2H3,(H,63,68)/b39-37+/t45-,46+,47+,48+,49+,51-,52-,53-,54+,55+,56+,57+,58+,59-,60+,61+,62-/m0/s1" LGN InChIKey InChI 1.03 JMENXJYBCQFIRK-KRJDXUSZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LGN "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamide" LGN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[(E,2S,3R)-1-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-5-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-4-[(2R,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]hexacosanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LGN "Create component" 2011-05-13 RCSB LGN "Modify descriptor" 2011-06-04 RCSB LGN "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LGN _pdbx_chem_comp_synonyms.name Isoglobotrihexosylceramide _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##