data_LHB # _chem_comp.id LHB _chem_comp.name "5-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]methyl]-4-azanyl-1-(methoxymethyl)pyrimidin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N9 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-09-13 _chem_comp.pdbx_modified_date 2017-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LHB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LV2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LHB C1 C1 C 0 1 Y N N 1.733 15.303 11.668 -6.226 -2.147 -0.400 C1 LHB 1 LHB C2 C2 C 0 1 Y N N 0.854 14.561 12.478 -4.952 -1.665 -0.054 C2 LHB 2 LHB C3 C3 C 0 1 Y N N -0.307 14.093 11.881 -4.570 -0.399 -0.530 C3 LHB 3 LHB N1 N1 N 0 1 Y N N -0.676 14.266 10.607 -5.420 0.291 -1.284 N1 LHB 4 LHB C4 C4 C 0 1 Y N N 0.235 14.976 9.936 -6.604 -0.201 -1.582 C4 LHB 5 LHB N2 N2 N 0 1 Y N N 1.385 15.493 10.376 -7.005 -1.387 -1.163 N2 LHB 6 LHB N3 N3 N 0 1 Y N N -0.991 13.425 12.865 -3.304 -0.182 -0.051 N3 LHB 7 LHB C5 C5 C 0 1 Y N N -0.207 13.513 13.987 -2.950 -1.276 0.680 C5 LHB 8 LHB N4 N4 N 0 1 Y N N 0.906 14.184 13.811 -3.918 -2.145 0.677 N4 LHB 9 LHB C6 C6 C 0 1 N N R -2.302 12.802 12.751 -2.482 1.009 -0.283 C6 LHB 10 LHB O1 O1 O 0 1 N N N -3.182 13.463 13.627 -1.090 0.724 -0.023 O1 LHB 11 LHB C7 C7 C 0 1 N N R -4.320 12.601 13.801 -0.444 1.983 0.229 C7 LHB 12 LHB C8 C8 C 0 1 N N S -3.795 11.166 13.677 -1.516 2.947 0.773 C8 LHB 13 LHB C9 C9 C 0 1 N N R -2.354 11.331 13.159 -2.822 2.116 0.747 C9 LHB 14 LHB O2 O2 O 0 1 N N N -2.110 10.499 12.030 -3.923 2.910 0.297 O2 LHB 15 LHB O3 O3 O 0 1 N N N -4.601 10.435 12.761 -1.633 4.094 -0.072 O3 LHB 16 LHB C10 C10 C 0 1 N N N -4.981 12.894 15.134 0.665 1.800 1.266 C10 LHB 17 LHB N5 N5 N 0 1 N N N -4.037 12.807 16.253 1.731 0.963 0.700 N5 LHB 18 LHB C11 C11 C 0 1 N N N -4.404 13.695 17.364 2.817 0.765 1.670 C11 LHB 19 LHB C12 C12 C 0 1 N N N -5.439 13.039 18.366 3.889 -0.097 1.055 C12 LHB 20 LHB N6 N6 N 0 1 N N N 2.879 15.833 12.105 -6.657 -3.387 0.039 N6 LHB 21 LHB C13 C13 C 0 1 N N N -6.844 12.786 18.103 3.784 -1.502 1.088 C13 LHB 22 LHB N7 N7 N 0 1 N N N -7.637 12.186 18.995 4.739 -2.244 0.541 N7 LHB 23 LHB C14 C14 C 0 1 N N N -7.158 11.794 20.202 5.794 -1.675 -0.038 C14 LHB 24 LHB N8 N8 N 0 1 N N N -5.822 12.049 20.505 5.923 -0.336 -0.085 N8 LHB 25 LHB C15 C15 C 0 1 N N N -5.008 12.650 19.583 4.966 0.467 0.458 C15 LHB 26 LHB N9 N9 N 0 1 N N N -7.391 13.195 16.954 2.699 -2.101 1.684 N9 LHB 27 LHB C16 C16 C 0 1 N N N -5.282 11.717 21.829 7.096 0.261 -0.729 C16 LHB 28 LHB O4 O4 O 0 1 N N N -5.558 10.395 22.198 6.964 0.158 -2.148 O4 LHB 29 LHB C17 C17 C 0 1 N N N -5.694 10.214 23.596 6.116 1.152 -2.727 C17 LHB 30 LHB O5 O5 O 0 1 N N N -7.852 11.198 21.026 6.658 -2.378 -0.534 O5 LHB 31 LHB H1 H1 H 0 1 N N N 0.011 15.157 8.895 -7.269 0.384 -2.201 H1 LHB 32 LHB H2 H2 H 0 1 N N N -0.482 13.069 14.932 -2.005 -1.403 1.188 H2 LHB 33 LHB H3 H3 H 0 1 N N N -2.661 12.890 11.715 -2.618 1.375 -1.300 H3 LHB 34 LHB H4 H4 H 0 1 N N N -5.050 12.778 12.997 -0.025 2.377 -0.697 H4 LHB 35 LHB H5 H5 H 0 1 N N N -3.780 10.688 14.668 -1.276 3.249 1.793 H5 LHB 36 LHB H6 H6 H 0 1 N N N -1.638 11.137 13.971 -3.029 1.686 1.727 H6 LHB 37 LHB H7 H7 H 0 1 N N N -2.145 9.587 12.295 -4.173 3.616 0.908 H7 LHB 38 LHB H8 H8 H 0 1 N N N -5.481 10.351 13.110 -2.294 4.735 0.224 H8 LHB 39 LHB H10 H9 H 0 1 N N N -5.402 13.910 15.105 1.074 2.774 1.537 H10 LHB 40 LHB H9 H10 H 0 1 N N N -5.790 12.166 15.296 0.257 1.318 2.154 H9 LHB 41 LHB H11 H11 H 0 1 N N N -4.020 11.865 16.587 1.365 0.078 0.381 H11 LHB 42 LHB H12 H13 H 0 1 N N N -3.492 13.953 17.922 3.240 1.732 1.944 H12 LHB 43 LHB H13 H14 H 0 1 N N N -4.851 14.610 16.948 2.423 0.275 2.561 H13 LHB 44 LHB H14 H15 H 0 1 N N N 3.329 16.320 11.356 -6.078 -3.934 0.592 H14 LHB 45 LHB H15 H16 H 0 1 N N N 2.688 16.472 12.850 -7.539 -3.708 -0.207 H15 LHB 46 LHB H16 H17 H 0 1 N N N -3.973 12.820 19.842 5.067 1.542 0.417 H16 LHB 47 LHB H18 H18 H 0 1 N N N -8.365 13.048 16.784 2.003 -1.556 2.083 H18 LHB 48 LHB H17 H19 H 0 1 N N N -6.826 13.648 16.264 2.629 -3.069 1.705 H17 LHB 49 LHB H20 H20 H 0 1 N N N -4.191 11.859 21.812 7.170 1.311 -0.446 H20 LHB 50 LHB H19 H21 H 0 1 N N N -5.729 12.393 22.573 7.994 -0.266 -0.408 H19 LHB 51 LHB H22 H22 H 0 1 N N N -5.909 9.157 23.810 5.115 1.066 -2.304 H22 LHB 52 LHB H23 H23 H 0 1 N N N -4.759 10.507 24.096 6.517 2.142 -2.512 H23 LHB 53 LHB H21 H24 H 0 1 N N N -6.520 10.838 23.968 6.068 1.006 -3.806 H21 LHB 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LHB C4 N2 DOUB Y N 1 LHB C4 N1 SING Y N 2 LHB N2 C1 SING Y N 3 LHB N1 C3 DOUB Y N 4 LHB C1 N6 SING N N 5 LHB C1 C2 DOUB Y N 6 LHB C3 C2 SING Y N 7 LHB C3 N3 SING Y N 8 LHB O2 C9 SING N N 9 LHB C2 N4 SING Y N 10 LHB C6 N3 SING N N 11 LHB C6 C9 SING N N 12 LHB C6 O1 SING N N 13 LHB O3 C8 SING N N 14 LHB N3 C5 SING Y N 15 LHB C9 C8 SING N N 16 LHB O1 C7 SING N N 17 LHB C8 C7 SING N N 18 LHB C7 C10 SING N N 19 LHB N4 C5 DOUB Y N 20 LHB C10 N5 SING N N 21 LHB N5 C11 SING N N 22 LHB N9 C13 SING N N 23 LHB C11 C12 SING N N 24 LHB C13 C12 SING N N 25 LHB C13 N7 DOUB N N 26 LHB C12 C15 DOUB N N 27 LHB N7 C14 SING N N 28 LHB C15 N8 SING N N 29 LHB C14 N8 SING N N 30 LHB C14 O5 DOUB N N 31 LHB N8 C16 SING N N 32 LHB C16 O4 SING N N 33 LHB O4 C17 SING N N 34 LHB C4 H1 SING N N 35 LHB C5 H2 SING N N 36 LHB C6 H3 SING N N 37 LHB C7 H4 SING N N 38 LHB C8 H5 SING N N 39 LHB C9 H6 SING N N 40 LHB O2 H7 SING N N 41 LHB O3 H8 SING N N 42 LHB C10 H10 SING N N 43 LHB C10 H9 SING N N 44 LHB N5 H11 SING N N 45 LHB C11 H12 SING N N 46 LHB C11 H13 SING N N 47 LHB N6 H14 SING N N 48 LHB N6 H15 SING N N 49 LHB C15 H16 SING N N 50 LHB N9 H18 SING N N 51 LHB N9 H17 SING N N 52 LHB C16 H20 SING N N 53 LHB C16 H19 SING N N 54 LHB C17 H22 SING N N 55 LHB C17 H23 SING N N 56 LHB C17 H21 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LHB InChI InChI 1.03 "InChI=1S/C17H23N9O5/c1-30-7-25-4-8(13(18)24-17(25)29)2-20-3-9-11(27)12(28)16(31-9)26-6-23-10-14(19)21-5-22-15(10)26/h4-6,9,11-12,16,20,27-28H,2-3,7H2,1H3,(H2,18,24,29)(H2,19,21,22)/t9-,11-,12-,16-/m1/s1" LHB InChIKey InChI 1.03 XNIWXZNBHJGVPA-UBEDBUPSSA-N LHB SMILES_CANONICAL CACTVS 3.385 "COCN1C=C(CNC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" LHB SMILES CACTVS 3.385 "COCN1C=C(CNC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" LHB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CNC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" LHB SMILES "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CNCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LHB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "5-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]methyl]-4-azanyl-1-(methoxymethyl)pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LHB "Create component" 2016-09-13 EBI LHB "Initial release" 2017-09-20 RCSB #