data_LHQ # _chem_comp.id LHQ _chem_comp.name "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H44 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-19 _chem_comp.pdbx_modified_date 2019-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 903.682 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LHQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SLA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LHQ C1 C4 C 0 1 Y N N 0.341 14.419 89.733 7.431 5.027 0.136 C1 LHQ 1 LHQ C2 C5 C 0 1 Y N N 0.945 14.121 88.560 7.291 5.739 1.339 C2 LHQ 2 LHQ C3 C6 C 0 1 Y N N 1.425 12.878 88.326 7.314 7.143 1.285 C3 LHQ 3 LHQ C4 C2 C 0 1 Y N N 0.709 12.216 90.466 7.595 7.016 -1.003 C4 LHQ 4 LHQ C5 C8 C 0 1 Y N N 0.326 16.197 88.522 7.205 3.628 1.826 C5 LHQ 5 LHQ N1 N1 N 0 1 Y N N 1.328 11.921 89.243 7.466 7.729 0.101 N1 LHQ 6 LHQ N2 N3 N 0 1 Y N N 0.208 13.486 90.693 7.579 5.700 -1.000 N2 LHQ 7 LHQ C6 CCB C 0 1 N N N 4.203 4.164 83.583 -14.672 4.100 -0.596 C6 LHQ 8 LHQ C7 CCC C 0 1 N N N 4.634 2.970 84.159 -15.239 5.155 0.296 C7 LHQ 9 LHQ C8 CCD C 0 1 N N N 5.782 2.628 84.868 -15.246 4.711 1.738 C8 LHQ 10 LHQ C9 CCF C 0 1 N N N 6.852 3.430 85.199 -15.946 3.671 2.067 C9 LHQ 11 LHQ C10 CCE C 0 1 N N N 6.955 4.766 84.856 -16.689 2.848 1.060 C10 LHQ 12 LHQ O1 OAV O 0 1 N N N 5.940 5.711 84.011 -15.772 2.157 0.225 O1 LHQ 13 LHQ C11 CCA C 0 1 N N N 4.780 5.427 83.485 -14.961 2.846 -0.594 C11 LHQ 14 LHQ C12 CBZ C 0 1 N N N 3.997 6.373 82.783 -14.278 2.027 -1.659 C12 LHQ 15 LHQ C13 CBY C 0 1 N N N 4.274 7.910 82.586 -13.028 1.406 -1.090 C13 LHQ 16 LHQ O2 OAU O 0 1 N N N 3.421 8.563 81.985 -12.722 1.608 0.066 O2 LHQ 17 LHQ S1 SAA S 0 1 N N N 5.876 8.709 83.127 -12.040 0.415 -2.077 S1 LHQ 18 LHQ C14 CBX C 0 1 N N N 5.472 10.506 83.209 -10.745 -0.020 -0.889 C14 LHQ 19 LHQ C15 CBW C 0 1 N N N 4.506 10.782 84.372 -9.717 -0.929 -1.565 C15 LHQ 20 LHQ N3 NBC N 0 1 N N N 3.947 12.125 84.295 -8.670 -1.281 -0.603 N3 LHQ 21 LHQ C16 CBV C 0 1 N N N 4.614 13.242 84.655 -7.651 -2.079 -0.979 C16 LHQ 22 LHQ O3 OAT O 0 1 N N N 5.787 13.258 85.054 -7.601 -2.506 -2.113 O3 LHQ 23 LHQ C17 CBU C 0 1 N N N 3.768 14.527 84.490 -6.573 -2.442 0.010 C17 LHQ 24 LHQ C18 CBT C 0 1 N N N 3.622 15.350 85.797 -5.545 -3.351 -0.666 C18 LHQ 25 LHQ N4 NBB N 0 1 N N N 4.420 16.532 85.501 -4.497 -3.703 0.296 N4 LHQ 26 LHQ C19 CBS C 0 1 N N N 4.114 17.840 85.387 -3.478 -4.502 -0.080 C19 LHQ 27 LHQ O4 OAS O 0 1 N N N 4.983 18.613 85.016 -3.477 -5.003 -1.184 O4 LHQ 28 LHQ C20 CBM C 0 1 N N R 2.752 18.463 85.833 -2.342 -4.770 0.872 C20 LHQ 29 LHQ O5 OAO O 0 1 N N N 2.109 17.801 86.941 -2.693 -4.307 2.177 O5 LHQ 30 LHQ C21 CBL C 0 1 N N N 1.780 18.754 84.652 -1.089 -4.036 0.391 C21 LHQ 31 LHQ C22 CBP C 0 1 N N N 1.170 17.491 84.024 -0.626 -4.634 -0.939 C22 LHQ 32 LHQ C23 CBQ C 0 1 N N N 2.507 19.548 83.535 -1.410 -2.552 0.198 C23 LHQ 33 LHQ C24 CBN C 0 1 N N N 0.640 19.568 85.236 0.022 -4.186 1.432 C24 LHQ 34 LHQ O6 OAM O 0 1 N N N 1.128 20.909 85.414 1.192 -3.500 0.982 O6 LHQ 35 LHQ P1 PAD P 0 1 N N N 0.371 22.030 86.308 2.559 -3.449 1.831 P1 LHQ 36 LHQ O7 OAQ O 0 1 N N N -0.883 22.423 85.584 2.997 -4.827 2.145 O7 LHQ 37 LHQ O8 OAR O 0 1 N N N 1.416 23.032 86.689 2.311 -2.640 3.201 O8 LHQ 38 LHQ O9 OAK O 0 1 N N N -0.171 21.256 87.653 3.699 -2.707 0.969 O9 LHQ 39 LHQ P2 PAC P 0 1 N N N 0.789 20.958 88.916 5.308 -2.681 1.030 P2 LHQ 40 LHQ O10 OAN O 0 1 N N N 2.090 20.376 88.433 5.747 -2.639 2.442 O10 LHQ 41 LHQ O11 OAP O 0 1 N N N 0.808 22.171 89.773 5.893 -4.004 0.324 O11 LHQ 42 LHQ O12 O5* O 0 1 N N N -0.079 19.816 89.728 5.852 -1.376 0.260 O12 LHQ 43 LHQ C25 C5* C 0 1 N N N -1.507 19.791 90.019 7.234 -1.012 0.226 C25 LHQ 44 LHQ C26 C4* C 0 1 N N R -1.846 18.611 91.013 7.403 0.273 -0.586 C26 LHQ 45 LHQ O13 O4* O 0 1 N N N -1.986 17.216 90.513 6.838 1.396 0.125 O13 LHQ 46 LHQ C27 C3* C 0 1 N N S -0.736 18.458 92.085 8.901 0.618 -0.742 C27 LHQ 47 LHQ O14 O3* O 0 1 N N N -1.312 17.853 93.281 9.386 0.180 -2.013 O14 LHQ 48 LHQ P3 PAB P 0 1 N N N -1.515 18.602 94.694 10.583 -0.885 -2.175 P3 LHQ 49 LHQ O15 OAJ O 0 1 N N N -0.277 18.257 95.434 10.777 -1.242 -3.733 O15 LHQ 50 LHQ O16 OAL O 0 1 N N N -2.751 17.909 95.098 11.946 -0.252 -1.596 O16 LHQ 51 LHQ O17 OAI O 0 1 N N N -1.662 20.046 94.368 10.253 -2.116 -1.424 O17 LHQ 52 LHQ C28 C2* C 0 1 N N R 0.238 17.503 91.389 8.943 2.159 -0.648 C28 LHQ 53 LHQ O18 O2* O 0 1 N N N 1.238 16.941 92.282 9.456 2.721 -1.858 O18 LHQ 54 LHQ C29 C1* C 0 1 N N R -0.744 16.456 90.822 7.466 2.564 -0.447 C29 LHQ 55 LHQ N5 N9 N 0 1 Y N N -0.051 15.700 89.700 7.369 3.698 0.474 N5 LHQ 56 LHQ N6 N7 N 0 1 Y N N 0.929 15.240 87.825 7.158 4.826 2.331 N6 LHQ 57 LHQ N7 N6 N 0 1 N N N 2.015 12.626 87.165 7.180 7.899 2.437 N7 LHQ 58 LHQ H1 H1 H 0 1 N N N 0.624 11.455 91.228 7.717 7.532 -1.943 H1 LHQ 59 LHQ H2 H2 H 0 1 N N N 0.167 17.212 88.189 7.121 2.713 2.393 H2 LHQ 60 LHQ H3 H3 H 0 1 N N N 3.229 4.096 83.122 -13.943 4.425 -1.324 H3 LHQ 61 LHQ H4 H4 H 0 1 N N N 3.819 2.712 84.851 -14.639 6.060 0.204 H4 LHQ 62 LHQ H5 H5 H 0 1 N N N 4.635 2.265 83.315 -16.261 5.372 -0.015 H5 LHQ 63 LHQ H6 H6 H 0 1 N N N 5.841 1.602 85.201 -14.679 5.251 2.483 H6 LHQ 64 LHQ H7 H7 H 0 1 N N N 7.661 2.988 85.762 -15.994 3.386 3.108 H7 LHQ 65 LHQ H8 H8 H 0 1 N N N 7.903 4.828 84.301 -17.321 2.127 1.578 H8 LHQ 66 LHQ H9 H9 H 0 1 N N N 7.061 5.283 85.821 -17.311 3.501 0.448 H9 LHQ 67 LHQ H10 H10 H 0 1 N N N 3.009 6.328 83.265 -14.951 1.242 -2.001 H10 LHQ 68 LHQ H11 H11 H 0 1 N N N 3.925 5.971 81.762 -14.014 2.671 -2.498 H11 LHQ 69 LHQ H12 H12 H 0 1 N N N 6.398 11.080 83.362 -10.253 0.888 -0.539 H12 LHQ 70 LHQ H13 H13 H 0 1 N N N 5.001 10.816 82.264 -11.190 -0.542 -0.042 H13 LHQ 71 LHQ H14 H14 H 0 1 N N N 3.685 10.051 84.336 -10.209 -1.836 -1.915 H14 LHQ 72 LHQ H15 H15 H 0 1 N N N 5.051 10.675 85.322 -9.272 -0.407 -2.412 H15 LHQ 73 LHQ H16 H16 H 0 1 N N N 3.012 12.226 83.955 -8.709 -0.940 0.304 H16 LHQ 74 LHQ H17 H17 H 0 1 N N N 4.247 15.163 83.731 -6.081 -1.534 0.361 H17 LHQ 75 LHQ H18 H18 H 0 1 N N N 2.763 14.240 84.147 -7.018 -2.964 0.858 H18 LHQ 76 LHQ H19 H19 H 0 1 N N N 2.571 15.614 85.988 -6.037 -4.258 -1.016 H19 LHQ 77 LHQ H20 H20 H 0 1 N N N 4.025 14.802 86.662 -5.100 -2.829 -1.513 H20 LHQ 78 LHQ H21 H21 H 0 1 N N N 5.389 16.334 85.353 -4.537 -3.362 1.203 H21 LHQ 79 LHQ H22 H22 H 0 1 N N N 3.024 19.460 86.209 -2.143 -5.842 0.908 H22 LHQ 80 LHQ H23 H23 H 0 1 N N N 1.958 18.427 87.640 -2.884 -3.360 2.221 H23 LHQ 81 LHQ H24 H24 H 0 1 N N N 0.648 16.911 84.799 -0.472 -5.707 -0.821 H24 LHQ 82 LHQ H25 H25 H 0 1 N N N 0.455 17.780 83.239 -1.385 -4.458 -1.701 H25 LHQ 83 LHQ H26 H26 H 0 1 N N N 1.970 16.878 83.583 0.309 -4.164 -1.243 H26 LHQ 84 LHQ H27 H27 H 0 1 N N N 2.953 20.458 83.962 -0.517 -2.029 -0.145 H27 LHQ 85 LHQ H28 H28 H 0 1 N N N 3.299 18.923 83.097 -2.201 -2.445 -0.543 H28 LHQ 86 LHQ H29 H29 H 0 1 N N N 1.785 19.825 82.753 -1.740 -2.126 1.146 H29 LHQ 87 LHQ H30 H30 H 0 1 N N N -0.217 19.566 84.546 -0.307 -3.760 2.379 H30 LHQ 88 LHQ H31 H31 H 0 1 N N N 0.332 19.146 86.204 0.251 -5.243 1.569 H31 LHQ 89 LHQ H32 H32 H 0 1 N N N 1.146 23.897 86.403 2.022 -1.726 3.071 H32 LHQ 90 LHQ H33 H33 H 0 1 N N N 1.707 22.444 89.917 5.645 -4.097 -0.606 H33 LHQ 91 LHQ H34 H34 H 0 1 N N N -1.800 20.747 90.478 7.591 -0.849 1.243 H34 LHQ 92 LHQ H35 H35 H 0 1 N N N -2.065 19.647 89.082 7.810 -1.813 -0.237 H35 LHQ 93 LHQ H36 H36 H 0 1 N N N -2.775 18.884 91.536 6.935 0.167 -1.565 H36 LHQ 94 LHQ H37 H37 H 0 1 N N N -0.259 19.426 92.296 9.482 0.168 0.063 H37 LHQ 95 LHQ H38 H38 H 0 1 N N N 0.234 19.044 95.582 11.483 -1.879 -3.905 H38 LHQ 96 LHQ H39 H39 H 0 1 N N N -3.477 18.522 95.085 12.224 0.560 -2.043 H39 LHQ 97 LHQ H40 H40 H 0 1 N N N 0.725 18.028 90.554 9.547 2.474 0.203 H40 LHQ 98 LHQ H41 H41 H 0 1 N N N 1.808 17.633 92.595 9.504 3.686 -1.855 H41 LHQ 99 LHQ H42 H42 H 0 1 N N N -0.968 15.739 91.626 7.007 2.811 -1.405 H42 LHQ 100 LHQ H43 H43 H 0 1 N N N 2.326 11.676 87.148 7.069 7.460 3.294 H43 LHQ 101 LHQ H44 H44 H 0 1 N N N 1.364 12.777 86.421 7.197 8.867 2.386 H44 LHQ 102 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LHQ O2 C13 DOUB N N 1 LHQ C13 C12 SING N N 2 LHQ C13 S1 SING N N 3 LHQ C12 C11 SING N N 4 LHQ S1 C14 SING N N 5 LHQ C14 C15 SING N N 6 LHQ C11 C6 DOUB N N 7 LHQ C11 O1 SING N N 8 LHQ C23 C21 SING N N 9 LHQ C6 C7 SING N N 10 LHQ O1 C10 SING N N 11 LHQ C22 C21 SING N N 12 LHQ C7 C8 SING N N 13 LHQ N3 C15 SING N N 14 LHQ N3 C16 SING N N 15 LHQ C17 C16 SING N N 16 LHQ C17 C18 SING N N 17 LHQ C21 C24 SING N N 18 LHQ C21 C20 SING N N 19 LHQ C16 O3 DOUB N N 20 LHQ C10 C9 SING N N 21 LHQ C8 C9 DOUB N N 22 LHQ O4 C19 DOUB N N 23 LHQ C24 O6 SING N N 24 LHQ C19 N4 SING N N 25 LHQ C19 C20 SING N N 26 LHQ O6 P1 SING N N 27 LHQ N4 C18 SING N N 28 LHQ O7 P1 DOUB N N 29 LHQ C20 O5 SING N N 30 LHQ P1 O8 SING N N 31 LHQ P1 O9 SING N N 32 LHQ N7 C3 SING N N 33 LHQ O9 P2 SING N N 34 LHQ N6 C5 DOUB Y N 35 LHQ N6 C2 SING Y N 36 LHQ C3 C2 DOUB Y N 37 LHQ C3 N1 SING Y N 38 LHQ O10 P2 DOUB N N 39 LHQ C5 N5 SING Y N 40 LHQ C2 C1 SING Y N 41 LHQ P2 O12 SING N N 42 LHQ P2 O11 SING N N 43 LHQ N1 C4 DOUB Y N 44 LHQ N5 C1 SING Y N 45 LHQ N5 C29 SING N N 46 LHQ O12 C25 SING N N 47 LHQ C1 N2 DOUB Y N 48 LHQ C25 C26 SING N N 49 LHQ C4 N2 SING Y N 50 LHQ O13 C29 SING N N 51 LHQ O13 C26 SING N N 52 LHQ C29 C28 SING N N 53 LHQ C26 C27 SING N N 54 LHQ C28 C27 SING N N 55 LHQ C28 O18 SING N N 56 LHQ C27 O14 SING N N 57 LHQ O14 P3 SING N N 58 LHQ O17 P3 DOUB N N 59 LHQ P3 O16 SING N N 60 LHQ P3 O15 SING N N 61 LHQ C4 H1 SING N N 62 LHQ C5 H2 SING N N 63 LHQ C6 H3 SING N N 64 LHQ C7 H4 SING N N 65 LHQ C7 H5 SING N N 66 LHQ C8 H6 SING N N 67 LHQ C9 H7 SING N N 68 LHQ C10 H8 SING N N 69 LHQ C10 H9 SING N N 70 LHQ C12 H10 SING N N 71 LHQ C12 H11 SING N N 72 LHQ C14 H12 SING N N 73 LHQ C14 H13 SING N N 74 LHQ C15 H14 SING N N 75 LHQ C15 H15 SING N N 76 LHQ N3 H16 SING N N 77 LHQ C17 H17 SING N N 78 LHQ C17 H18 SING N N 79 LHQ C18 H19 SING N N 80 LHQ C18 H20 SING N N 81 LHQ N4 H21 SING N N 82 LHQ C20 H22 SING N N 83 LHQ O5 H23 SING N N 84 LHQ C22 H24 SING N N 85 LHQ C22 H25 SING N N 86 LHQ C22 H26 SING N N 87 LHQ C23 H27 SING N N 88 LHQ C23 H28 SING N N 89 LHQ C23 H29 SING N N 90 LHQ C24 H30 SING N N 91 LHQ C24 H31 SING N N 92 LHQ O8 H32 SING N N 93 LHQ O11 H33 SING N N 94 LHQ C25 H34 SING N N 95 LHQ C25 H35 SING N N 96 LHQ C26 H36 SING N N 97 LHQ C27 H37 SING N N 98 LHQ O15 H38 SING N N 99 LHQ O16 H39 SING N N 100 LHQ C28 H40 SING N N 101 LHQ O18 H41 SING N N 102 LHQ C29 H42 SING N N 103 LHQ N7 H43 SING N N 104 LHQ N7 H44 SING N N 105 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LHQ InChI InChI 1.03 "InChI=1S/C29H44N7O18P3S/c1-29(2,24(40)27(41)32-8-7-19(37)31-9-11-58-20(38)12-17-6-4-3-5-10-49-17)14-51-57(47,48)54-56(45,46)50-13-18-23(53-55(42,43)44)22(39)28(52-18)36-16-35-21-25(30)33-15-34-26(21)36/h3,5-6,15-16,18,22-24,28,39-40H,4,7-14H2,1-2H3,(H,31,37)(H,32,41)(H,45,46)(H,47,48)(H2,30,33,34)(H2,42,43,44)/t18-,22-,23-,24+,28-/m1/s1" LHQ InChIKey InChI 1.03 GQJGZLQATBGDEV-CECATXLMSA-N LHQ SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC4=CCC=CCO4" LHQ SMILES CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CC4=CCC=CCO4" LHQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)CC4=CCC=CCO4)O" LHQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CC4=CCC=CCO4)O" # _pdbx_chem_comp_identifier.comp_id LHQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LHQ "Create component" 2019-08-19 EBI LHQ "Initial release" 2019-12-11 RCSB ##