data_LJX # _chem_comp.id LJX _chem_comp.name "(2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-17 _chem_comp.pdbx_modified_date 2022-08-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.467 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LJX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CU6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LJX C1 C1 C 0 1 Y N N -18.775 1.232 19.722 6.027 0.291 -0.112 C1 LJX 1 LJX C11 C2 C 0 1 N N N -22.484 9.397 15.894 -3.469 -1.260 0.390 C11 LJX 2 LJX C12 C3 C 0 1 N N N -23.255 10.103 15.312 -4.597 -0.969 0.536 C12 LJX 3 LJX C13 C4 C 0 1 N N N -24.186 10.961 14.573 -6.011 -0.605 0.719 C13 LJX 4 LJX C14 C5 C 0 1 N N N -23.428 11.746 13.501 -6.399 0.465 -0.304 C14 LJX 5 LJX C15 C6 C 0 1 N N N -22.572 10.811 12.644 -7.869 0.843 -0.114 C15 LJX 6 LJX C16 C7 C 0 1 N N N -21.132 10.737 13.153 -8.257 1.913 -1.137 C16 LJX 7 LJX C2 C8 C 0 1 Y N N -21.573 8.543 16.578 -2.092 -1.614 0.213 C2 LJX 8 LJX C3 C9 C 0 1 Y N N -20.046 1.326 20.144 6.026 -1.043 -0.013 C3 LJX 9 LJX C4 C10 C 0 1 Y N N -21.154 6.395 17.473 0.118 -0.964 0.189 C4 LJX 10 LJX C5 C11 C 0 1 Y N N -19.927 6.811 17.876 0.490 -2.285 -0.123 C5 LJX 11 LJX C6 C12 C 0 1 Y N N -19.514 8.123 17.620 -0.526 -3.250 -0.261 C6 LJX 12 LJX C7 C13 C 0 1 Y N N -20.691 2.541 19.767 4.780 -1.627 0.031 C7 LJX 13 LJX C8 C14 C 0 1 Y N N -20.169 4.707 18.472 2.318 -1.109 -0.006 C8 LJX 14 LJX C9 C15 C 0 1 Y N N -19.872 3.375 19.039 3.743 -0.747 -0.034 C9 LJX 15 LJX N1 N1 N 0 1 Y N N -20.348 8.978 16.971 -1.786 -2.874 -0.086 N1 LJX 16 LJX N3 N2 N 0 1 Y N N -21.963 7.272 16.826 -1.167 -0.674 0.346 N3 LJX 17 LJX S1 S1 S 0 1 Y N N -18.345 2.627 18.854 4.374 0.890 -0.148 S1 LJX 18 LJX "C2'" C16 C 0 1 N N R -23.735 4.985 17.111 0.990 2.030 -0.671 "C2'" LJX 19 LJX "C4'" C17 C 0 1 N N N -22.968 3.554 15.435 0.319 2.994 1.463 "C4'" LJX 20 LJX "C3'" C18 C 0 1 N N R -23.488 4.969 15.612 0.258 3.246 -0.060 "C3'" LJX 21 LJX "C1'" C19 C 0 1 N N R -22.494 4.232 17.606 1.407 1.188 0.555 "C1'" LJX 22 LJX N9 N3 N 0 1 Y N N -21.315 5.091 17.839 1.286 -0.242 0.257 N9 LJX 23 LJX N7 N4 N 0 1 Y N N -19.317 5.750 18.500 1.837 -2.312 -0.229 N7 LJX 24 LJX N6 N5 N 0 1 N N N -18.306 8.537 18.016 -0.217 -4.564 -0.567 N6 LJX 25 LJX "O2'" O1 O 0 1 N N N -24.910 4.227 17.357 2.142 2.454 -1.401 "O2'" LJX 26 LJX "O4'" O2 O 0 1 N N N -22.175 3.270 16.594 0.478 1.565 1.595 "O4'" LJX 27 LJX "O3'" O3 O 0 1 N N N -24.685 5.228 14.897 0.936 4.458 -0.395 "O3'" LJX 28 LJX H1 H1 H 0 1 N N N -18.122 0.392 19.907 6.911 0.909 -0.158 H1 LJX 29 LJX H2 H2 H 0 1 N N N -24.666 11.664 15.270 -6.635 -1.488 0.575 H2 LJX 30 LJX H3 H3 H 0 1 N N N -24.955 10.337 14.094 -6.159 -0.216 1.726 H3 LJX 31 LJX H4 H4 H 0 1 N N N -22.776 12.485 13.989 -5.775 1.347 -0.161 H4 LJX 32 LJX H5 H5 H 0 1 N N N -24.152 12.265 12.855 -6.251 0.075 -1.311 H5 LJX 33 LJX H6 H6 H 0 1 N N N -22.565 11.183 11.609 -8.493 -0.039 -0.258 H6 LJX 34 LJX H7 H7 H 0 1 N N N -23.011 9.803 12.669 -8.017 1.232 0.893 H7 LJX 35 LJX H8 H8 H 0 1 N N N -20.551 10.057 12.513 -7.633 2.795 -0.993 H8 LJX 36 LJX H9 H9 H 0 1 N N N -20.682 11.740 13.126 -8.109 1.524 -2.144 H9 LJX 37 LJX H10 H10 H 0 1 N N N -21.127 10.360 14.187 -9.304 2.183 -1.002 H10 LJX 38 LJX H11 H11 H 0 1 N N N -20.535 0.552 20.717 6.938 -1.621 0.029 H11 LJX 39 LJX H12 H12 H 0 1 N N N -21.712 2.781 20.025 4.638 -2.695 0.110 H12 LJX 40 LJX H13 H13 H 0 1 N N N -23.778 6.009 17.511 0.319 1.461 -1.315 H13 LJX 41 LJX H14 H14 H 0 1 N N N -23.807 2.846 15.364 1.173 3.513 1.899 H14 LJX 42 LJX H15 H15 H 0 1 N N N -22.352 3.485 14.526 -0.607 3.319 1.938 H15 LJX 43 LJX H16 H16 H 0 1 N N N -22.701 5.693 15.354 -0.777 3.279 -0.401 H16 LJX 44 LJX H17 H17 H 0 1 N N N -22.753 3.715 18.542 2.428 1.428 0.851 H17 LJX 45 LJX H18 H18 H 0 1 N N N -18.180 9.494 17.756 0.708 -4.829 -0.688 H18 LJX 46 LJX H19 H19 H 0 1 N N N -18.233 8.449 19.009 -0.925 -5.220 -0.659 H19 LJX 47 LJX H20 H20 H 0 1 N N N -25.092 4.218 18.289 1.939 2.987 -2.182 H20 LJX 48 LJX H21 H21 H 0 1 N N N -24.957 6.126 15.049 0.554 5.248 0.012 H21 LJX 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LJX C15 C16 SING N N 1 LJX C15 C14 SING N N 2 LJX C14 C13 SING N N 3 LJX C13 C12 SING N N 4 LJX "O3'" "C3'" SING N N 5 LJX C12 C11 TRIP N N 6 LJX "C4'" "C3'" SING N N 7 LJX "C4'" "O4'" SING N N 8 LJX "C3'" "C2'" SING N N 9 LJX C11 C2 SING N N 10 LJX C2 N3 DOUB Y N 11 LJX C2 N1 SING Y N 12 LJX "O4'" "C1'" SING N N 13 LJX N3 C4 SING Y N 14 LJX N1 C6 DOUB Y N 15 LJX "C2'" "O2'" SING N N 16 LJX "C2'" "C1'" SING N N 17 LJX C4 N9 SING Y N 18 LJX C4 C5 DOUB Y N 19 LJX "C1'" N9 SING N N 20 LJX C6 C5 SING Y N 21 LJX C6 N6 SING N N 22 LJX N9 C8 SING Y N 23 LJX C5 N7 SING Y N 24 LJX C8 N7 DOUB Y N 25 LJX C8 C9 SING N N 26 LJX S1 C9 SING Y N 27 LJX S1 C1 SING Y N 28 LJX C9 C7 DOUB Y N 29 LJX C1 C3 DOUB Y N 30 LJX C7 C3 SING Y N 31 LJX C1 H1 SING N N 32 LJX C13 H2 SING N N 33 LJX C13 H3 SING N N 34 LJX C14 H4 SING N N 35 LJX C14 H5 SING N N 36 LJX C15 H6 SING N N 37 LJX C15 H7 SING N N 38 LJX C16 H8 SING N N 39 LJX C16 H9 SING N N 40 LJX C16 H10 SING N N 41 LJX C3 H11 SING N N 42 LJX C7 H12 SING N N 43 LJX "C2'" H13 SING N N 44 LJX "C4'" H14 SING N N 45 LJX "C4'" H15 SING N N 46 LJX "C3'" H16 SING N N 47 LJX "C1'" H17 SING N N 48 LJX N6 H18 SING N N 49 LJX N6 H19 SING N N 50 LJX "O2'" H20 SING N N 51 LJX "O3'" H21 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LJX SMILES ACDLabs 12.01 "OC1C(O)COC1n1c2nc(C#CCCCC)nc(N)c2nc1c1cccs1" LJX InChI InChI 1.03 "InChI=1S/C19H21N5O3S/c1-2-3-4-5-8-13-21-16(20)14-18(22-13)24(19-15(26)11(25)10-27-19)17(23-14)12-7-6-9-28-12/h6-7,9,11,15,19,25-26H,2-4,10H2,1H3,(H2,20,21,22)/t11-,15-,19-/m1/s1" LJX InChIKey InChI 1.03 MUHXGASCCALSAJ-PRIMNGNOSA-N LJX SMILES_CANONICAL CACTVS 3.385 "CCCCC#Cc1nc(N)c2nc(n([C@@H]3OC[C@@H](O)[C@H]3O)c2n1)c4sccc4" LJX SMILES CACTVS 3.385 "CCCCC#Cc1nc(N)c2nc(n([CH]3OC[CH](O)[CH]3O)c2n1)c4sccc4" LJX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC#Cc1nc(c2c(n1)n(c(n2)c3cccs3)[C@H]4[C@@H]([C@@H](CO4)O)O)N" LJX SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC#Cc1nc(c2c(n1)n(c(n2)c3cccs3)C4C(C(CO4)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LJX "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol" LJX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R})-2-(6-azanyl-2-hex-1-ynyl-8-thiophen-2-yl-purin-9-yl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LJX "Create component" 2022-05-17 RCSB LJX "Other modification" 2022-05-24 RCSB LJX "Initial release" 2022-08-31 RCSB #