data_LPA # _chem_comp.id LPA _chem_comp.name "LIPOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H14 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.326 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LPA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1X2H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LPA C1 C1 C 0 1 N N N N N N 30.282 84.485 62.483 4.586 0.088 -0.141 C1 LPA 1 LPA O1 O1 O 0 1 N N N N N N 31.239 84.975 63.172 5.707 0.729 0.222 O1 LPA 2 LPA C2 C2 C 0 1 N N N N N N 30.560 83.685 61.195 3.273 0.437 0.510 C2 LPA 3 LPA O2 O2 O 0 1 N N N N N N 29.060 84.607 62.804 4.628 -0.767 -0.995 O2 LPA 4 LPA C3 C3 C 0 1 N N N N N N 31.430 84.673 60.345 2.161 -0.429 -0.085 C3 LPA 5 LPA C4 C4 C 0 1 N N N N N N 32.829 84.043 60.317 0.828 -0.074 0.577 C4 LPA 6 LPA C5 C5 C 0 1 N N N N N N 33.204 83.690 58.871 -0.284 -0.940 -0.018 C5 LPA 7 LPA C6 C6 C 0 1 N N R N N N 33.646 82.244 58.685 -1.617 -0.585 0.644 C6 LPA 8 LPA S6 S6 S 0 1 N N N N N N 32.257 81.159 58.775 -2.092 1.123 0.189 S6 LPA 9 LPA C7 C7 C 0 1 N N N N N N 34.256 82.099 57.290 -2.701 -1.550 0.162 C7 LPA 10 LPA C8 C8 C 0 1 N N N N N N 33.326 81.628 56.151 -4.121 -0.951 0.211 C8 LPA 11 LPA S8 S8 S 0 1 N N N N N N 32.001 80.688 56.844 -3.941 0.676 -0.635 S8 LPA 12 LPA HO1 HO1 H 0 1 N N N N N N 30.886 85.425 63.931 6.524 0.473 -0.227 HO1 LPA 13 LPA H2 H2 H 0 1 N N N N N N 31.098 82.749 61.406 3.340 0.256 1.583 H2 LPA 14 LPA H2A H2A H 0 1 N N N N N N 29.629 83.415 60.676 3.048 1.489 0.333 H2A LPA 15 LPA H3 H3 H 0 1 N N N N N N 31.025 84.780 59.328 2.094 -0.247 -1.158 H3 LPA 16 LPA H3A H3A H 0 1 N N N N N N 31.456 85.672 60.805 2.386 -1.481 0.092 H3A LPA 17 LPA H4 H4 H 0 1 N N N N N N 33.561 84.758 60.721 0.895 -0.256 1.650 H4 LPA 18 LPA H4A H4A H 0 1 N N N N N N 32.832 83.129 60.930 0.603 0.978 0.400 H4A LPA 19 LPA H5 H5 H 0 1 N N N N N N 32.320 83.860 58.239 -0.351 -0.759 -1.091 H5 LPA 20 LPA H5A H5A H 0 1 N N N N N N 34.035 84.342 58.566 -0.059 -1.992 0.159 H5A LPA 21 LPA H6 H6 H 0 1 N N N N N N 34.369 81.988 59.473 -1.519 -0.661 1.727 H6 LPA 22 LPA H7 H7 H 0 1 N N N N N N 34.636 83.091 57.003 -2.480 -1.841 -0.865 H7 LPA 23 LPA H7A H7A H 0 1 N N N N N N 35.064 81.357 57.370 -2.680 -2.442 0.789 H7A LPA 24 LPA H8 H8 H 0 1 N N N N N N 32.921 82.502 55.619 -4.824 -1.587 -0.328 H8 LPA 25 LPA H8A H8A H 0 1 N N N N N N 33.893 81.003 55.445 -4.443 -0.812 1.243 H8A LPA 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LPA C2 C1 SING N N 1 LPA C1 O2 DOUB N N 2 LPA C1 O1 SING N N 3 LPA O1 HO1 SING N N 4 LPA C3 C2 SING N N 5 LPA C2 H2 SING N N 6 LPA C2 H2A SING N N 7 LPA C4 C3 SING N N 8 LPA C3 H3 SING N N 9 LPA C3 H3A SING N N 10 LPA C5 C4 SING N N 11 LPA C4 H4 SING N N 12 LPA C4 H4A SING N N 13 LPA C6 C5 SING N N 14 LPA C5 H5 SING N N 15 LPA C5 H5A SING N N 16 LPA C7 C6 SING N N 17 LPA C6 S6 SING N N 18 LPA C6 H6 SING N N 19 LPA S8 S6 SING N N 20 LPA C8 C7 SING N N 21 LPA C7 H7 SING N N 22 LPA C7 H7A SING N N 23 LPA C8 S8 SING N N 24 LPA C8 H8 SING N N 25 LPA C8 H8A SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LPA SMILES ACDLabs 12.01 "O=C(O)CCCCC1SSCC1" LPA InChI InChI 1.03 "InChI=1S/C8H14O2S2/c9-8(10)4-2-1-3-7-5-6-11-12-7/h7H,1-6H2,(H,9,10)/t7-/m1/s1" LPA InChIKey InChI 1.03 AGBQKNBQESQNJD-SSDOTTSWSA-N LPA SMILES_CANONICAL CACTVS 3.370 "OC(=O)CCCC[C@@H]1CCSS1" LPA SMILES CACTVS 3.370 "OC(=O)CCCC[CH]1CCSS1" LPA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1CSS[C@@H]1CCCCC(=O)O" LPA SMILES "OpenEye OEToolkits" 1.7.2 "C1CSSC1CCCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LPA "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" LPA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LPA "Create component" 1999-07-08 RCSB LPA "Modify descriptor" 2011-06-04 RCSB LPA "Other modification" 2011-09-08 RCSB LPA "Modify synonyms" 2020-06-05 PDBE LPA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LPA _pdbx_chem_comp_synonyms.name "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id LPA _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Lipoylation _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0383 #