data_LX3 # _chem_comp.id LX3 _chem_comp.name "(1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]hept-2-enylidene]cyclohexane-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H42 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-02-06 _chem_comp.pdbx_modified_date 2018-05-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.631 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LX3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FO7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LX3 C4 C1 C 0 1 N N N -3.964 34.094 36.210 -6.143 -4.283 -0.516 C4 LX3 1 LX3 C5 C2 C 0 1 N N N -3.462 34.570 37.523 -5.225 -3.747 0.584 C5 LX3 2 LX3 C6 C3 C 0 1 N N N -2.078 35.139 37.463 -4.081 -2.951 -0.048 C6 LX3 3 LX3 C7 C4 C 0 1 N N N -1.488 35.187 38.860 -3.163 -2.415 1.052 C7 LX3 4 LX3 C8 C5 C 0 1 N N N -0.031 35.538 38.915 -2.037 -1.632 0.430 C8 LX3 5 LX3 O9 O1 O 0 1 N N N 4.813 28.535 34.079 7.873 1.196 -1.372 O9 LX3 6 LX3 C10 C6 C 0 1 N N N 4.313 29.596 33.238 7.669 1.525 0.003 C10 LX3 7 LX3 C11 C7 C 0 1 N N N 5.439 30.587 32.987 9.021 1.785 0.671 C11 LX3 8 LX3 C12 C8 C 0 1 N N N 3.860 28.987 31.925 6.800 2.780 0.105 C12 LX3 9 LX3 C13 C9 C 0 1 N N N 3.128 30.248 33.961 6.968 0.361 0.707 C13 LX3 10 LX3 C14 C10 C 0 1 N N N 3.388 31.045 35.235 5.616 0.101 0.039 C14 LX3 11 LX3 C15 C11 C 0 1 N N N 2.937 30.350 36.509 4.916 -1.064 0.742 C15 LX3 12 LX3 C16 C12 C 0 1 N N N 1.488 30.582 36.897 3.564 -1.324 0.074 C16 LX3 13 LX3 C17 C13 C 0 1 N N N 1.272 30.713 38.400 2.863 -2.488 0.778 C17 LX3 14 LX3 C18 C14 C 0 1 Y N N 1.571 32.099 38.915 1.532 -2.744 0.120 C18 LX3 15 LX3 C19 C15 C 0 1 Y N N 0.658 33.135 38.722 0.405 -2.088 0.569 C19 LX3 16 LX3 C20 C16 C 0 1 Y N N 2.778 32.378 39.541 1.444 -3.633 -0.938 C20 LX3 17 LX3 C21 C17 C 0 1 Y N N 3.084 33.665 39.947 0.226 -3.875 -1.549 C21 LX3 18 LX3 C22 C18 C 0 1 Y N N 2.183 34.692 39.734 -0.910 -3.231 -1.108 C22 LX3 19 LX3 C23 C19 C 0 1 Y N N 0.955 34.438 39.123 -0.830 -2.327 -0.043 C23 LX3 20 LX3 C24 C20 C 0 1 N N N 0.461 36.800 38.797 -2.135 -0.290 0.306 C24 LX3 21 LX3 C25 C21 C 0 1 N N N -0.247 38.034 38.593 -3.296 0.379 0.760 C25 LX3 22 LX3 C26 C22 C 0 1 N N N 0.291 39.239 38.247 -3.394 1.722 0.636 C26 LX3 23 LX3 C27 C23 C 0 1 N N N 1.724 39.391 37.966 -2.313 2.525 0.032 C27 LX3 24 LX3 C28 C24 C 0 1 N N N 2.357 38.532 37.186 -1.030 2.304 0.325 C28 LX3 25 LX3 C29 C25 C 0 1 N N S 2.303 40.643 38.585 -2.730 3.612 -0.939 C29 LX3 26 LX3 O30 O2 O 0 1 N N N 3.683 40.754 38.216 -3.158 3.022 -2.168 O30 LX3 27 LX3 C31 C26 C 0 1 N N N 1.513 41.826 38.038 -3.885 4.400 -0.314 C31 LX3 28 LX3 C32 C27 C 0 1 N N R 0.075 41.760 38.519 -5.042 3.454 0.009 C32 LX3 29 LX3 O33 O3 O 0 1 N N N 0.065 41.807 39.947 -6.167 4.215 0.455 O33 LX3 30 LX3 C34 C28 C 0 1 N N N -0.570 40.471 38.033 -4.623 2.475 1.105 C34 LX3 31 LX3 H1 H1 H 0 1 N N N -4.981 33.691 36.330 -5.573 -4.931 -1.181 H1 LX3 32 LX3 H2 H2 H 0 1 N N N -3.983 34.933 35.499 -6.957 -4.850 -0.066 H2 LX3 33 LX3 H3 H3 H 0 1 N N N -3.300 33.305 35.828 -6.552 -3.448 -1.086 H3 LX3 34 LX3 H4 H4 H 0 1 N N N -4.143 35.350 37.894 -5.795 -3.098 1.249 H4 LX3 35 LX3 H5 H5 H 0 1 N N N -3.460 33.722 38.223 -4.815 -4.581 1.154 H5 LX3 36 LX3 H6 H6 H 0 1 N N N -1.449 34.505 36.821 -3.511 -3.600 -0.713 H6 LX3 37 LX3 H7 H7 H 0 1 N N N -2.118 36.157 37.047 -4.490 -2.117 -0.618 H7 LX3 38 LX3 H8 H8 H 0 1 N N N -2.043 35.938 39.440 -3.733 -1.767 1.717 H8 LX3 39 LX3 H9 H9 H 0 1 N N N -1.619 34.197 39.321 -2.753 -3.250 1.622 H9 LX3 40 LX3 H10 H10 H 0 1 N N N 5.102 28.897 34.908 8.417 0.409 -1.513 H10 LX3 41 LX3 H11 H11 H 0 1 N N N 5.763 31.025 33.943 9.640 0.891 0.599 H11 LX3 42 LX3 H12 H12 H 0 1 N N N 6.286 30.067 32.516 9.520 2.614 0.170 H12 LX3 43 LX3 H13 H13 H 0 1 N N N 5.082 31.386 32.320 8.865 2.035 1.721 H13 LX3 44 LX3 H14 H14 H 0 1 N N N 3.046 28.272 32.114 6.644 3.030 1.154 H14 LX3 45 LX3 H15 H15 H 0 1 N N N 3.501 29.783 31.256 7.299 3.609 -0.396 H15 LX3 46 LX3 H16 H16 H 0 1 N N N 4.705 28.465 31.452 5.837 2.594 -0.371 H16 LX3 47 LX3 H17 H17 H 0 1 N N N 2.650 30.932 33.245 7.587 -0.533 0.635 H17 LX3 48 LX3 H18 H18 H 0 1 N N N 2.427 29.442 34.222 6.812 0.611 1.756 H18 LX3 49 LX3 H19 H19 H 0 1 N N N 4.469 31.233 35.309 4.997 0.995 0.111 H19 LX3 50 LX3 H20 H20 H 0 1 N N N 2.853 32.003 35.157 5.772 -0.150 -1.010 H20 LX3 51 LX3 H21 H21 H 0 1 N N N 3.084 29.268 36.376 5.535 -1.958 0.670 H21 LX3 52 LX3 H22 H22 H 0 1 N N N 3.571 30.708 37.334 4.760 -0.813 1.792 H22 LX3 53 LX3 H23 H23 H 0 1 N N N 1.143 31.508 36.414 2.945 -0.430 0.147 H23 LX3 54 LX3 H24 H24 H 0 1 N N N 0.890 29.734 36.532 3.720 -1.574 -0.975 H24 LX3 55 LX3 H25 H25 H 0 1 N N N 0.223 30.473 38.627 3.482 -3.382 0.706 H25 LX3 56 LX3 H26 H26 H 0 1 N N N 1.931 29.998 38.913 2.707 -2.237 1.827 H26 LX3 57 LX3 H27 H27 H 0 1 N N N -0.293 32.926 38.255 0.476 -1.392 1.392 H27 LX3 58 LX3 H28 H28 H 0 1 N N N 3.487 31.581 39.713 2.331 -4.140 -1.288 H28 LX3 59 LX3 H29 H29 H 0 1 N N N 4.028 33.868 40.431 0.166 -4.570 -2.373 H29 LX3 60 LX3 H30 H30 H 0 1 N N N 2.431 35.697 40.043 -1.860 -3.421 -1.586 H30 LX3 61 LX3 H31 H31 H 0 1 N N N 1.535 36.887 38.866 -1.328 0.271 -0.141 H31 LX3 62 LX3 H32 H32 H 0 1 N N N -1.318 38.004 38.728 -4.103 -0.183 1.207 H32 LX3 63 LX3 H33 H33 H 0 1 N N N 3.395 38.694 36.934 -0.762 1.522 1.021 H33 LX3 64 LX3 H34 H34 H 0 1 N N N 1.837 37.668 36.800 -0.260 2.907 -0.132 H34 LX3 65 LX3 H35 H35 H 0 1 N N N 2.193 40.601 39.679 -1.888 4.280 -1.126 H35 LX3 66 LX3 H36 H36 H 0 1 N N N 4.052 41.539 38.602 -2.478 2.494 -2.609 H36 LX3 67 LX3 H37 H37 H 0 1 N N N 1.531 41.798 36.938 -3.540 4.878 0.603 H37 LX3 68 LX3 H38 H38 H 0 1 N N N 1.971 42.763 38.388 -4.226 5.164 -1.013 H38 LX3 69 LX3 H39 H39 H 0 1 N N N -0.480 42.615 38.106 -5.314 2.895 -0.886 H39 LX3 70 LX3 H40 H40 H 0 1 N N N 0.470 42.615 40.241 -6.940 3.679 0.678 H40 LX3 71 LX3 H41 H41 H 0 1 N N N -0.774 40.569 36.957 -5.434 1.772 1.297 H41 LX3 72 LX3 H42 H42 H 0 1 N N N -1.517 40.331 38.575 -4.391 3.026 2.016 H42 LX3 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LX3 C12 C10 SING N N 1 LX3 C11 C10 SING N N 2 LX3 C10 C13 SING N N 3 LX3 C10 O9 SING N N 4 LX3 C13 C14 SING N N 5 LX3 C14 C15 SING N N 6 LX3 C4 C5 SING N N 7 LX3 C15 C16 SING N N 8 LX3 C16 C17 SING N N 9 LX3 C28 C27 DOUB N N 10 LX3 C6 C5 SING N N 11 LX3 C6 C7 SING N N 12 LX3 C27 C26 SING N N 13 LX3 C27 C29 SING N N 14 LX3 C34 C26 SING N N 15 LX3 C34 C32 SING N N 16 LX3 C31 C32 SING N N 17 LX3 C31 C29 SING N N 18 LX3 O30 C29 SING N N 19 LX3 C26 C25 DOUB N Z 20 LX3 C17 C18 SING N N 21 LX3 C32 O33 SING N N 22 LX3 C25 C24 SING N N 23 LX3 C19 C18 DOUB Y N 24 LX3 C19 C23 SING Y N 25 LX3 C24 C8 DOUB N E 26 LX3 C7 C8 SING N N 27 LX3 C8 C23 SING N N 28 LX3 C18 C20 SING Y N 29 LX3 C23 C22 DOUB Y N 30 LX3 C20 C21 DOUB Y N 31 LX3 C22 C21 SING Y N 32 LX3 C4 H1 SING N N 33 LX3 C4 H2 SING N N 34 LX3 C4 H3 SING N N 35 LX3 C5 H4 SING N N 36 LX3 C5 H5 SING N N 37 LX3 C6 H6 SING N N 38 LX3 C6 H7 SING N N 39 LX3 C7 H8 SING N N 40 LX3 C7 H9 SING N N 41 LX3 O9 H10 SING N N 42 LX3 C11 H11 SING N N 43 LX3 C11 H12 SING N N 44 LX3 C11 H13 SING N N 45 LX3 C12 H14 SING N N 46 LX3 C12 H15 SING N N 47 LX3 C12 H16 SING N N 48 LX3 C13 H17 SING N N 49 LX3 C13 H18 SING N N 50 LX3 C14 H19 SING N N 51 LX3 C14 H20 SING N N 52 LX3 C15 H21 SING N N 53 LX3 C15 H22 SING N N 54 LX3 C16 H23 SING N N 55 LX3 C16 H24 SING N N 56 LX3 C17 H25 SING N N 57 LX3 C17 H26 SING N N 58 LX3 C19 H27 SING N N 59 LX3 C20 H28 SING N N 60 LX3 C21 H29 SING N N 61 LX3 C22 H30 SING N N 62 LX3 C24 H31 SING N N 63 LX3 C25 H32 SING N N 64 LX3 C28 H33 SING N N 65 LX3 C28 H34 SING N N 66 LX3 C29 H35 SING N N 67 LX3 O30 H36 SING N N 68 LX3 C31 H37 SING N N 69 LX3 C31 H38 SING N N 70 LX3 C32 H39 SING N N 71 LX3 O33 H40 SING N N 72 LX3 C34 H41 SING N N 73 LX3 C34 H42 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LX3 InChI InChI 1.03 "InChI=1S/C28H42O3/c1-5-6-13-23(15-16-24-19-26(29)20-27(30)21(24)2)25-14-10-12-22(18-25)11-8-7-9-17-28(3,4)31/h10,12,14-16,18,26-27,29-31H,2,5-9,11,13,17,19-20H2,1,3-4H3/b23-15+,24-16-/t26-,27+/m1/s1" LX3 InChIKey InChI 1.03 UWAWDTCFOCGFNY-NTWKYLMFSA-N LX3 SMILES_CANONICAL CACTVS 3.385 "CCCC\C(=C/C=C\1C[C@@H](O)C[C@H](O)C\1=C)c2cccc(CCCCCC(C)(C)O)c2" LX3 SMILES CACTVS 3.385 "CCCCC(=CC=C1C[CH](O)C[CH](O)C1=C)c2cccc(CCCCCC(C)(C)O)c2" LX3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCC/C(=C\C=C/1\C[C@H](C[C@@H](C1=C)O)O)/c2cccc(c2)CCCCCC(C)(C)O" LX3 SMILES "OpenEye OEToolkits" 2.0.6 "CCCCC(=CC=C1CC(CC(C1=C)O)O)c2cccc(c2)CCCCCC(C)(C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LX3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]hept-2-enylidene]cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LX3 "Create component" 2018-02-06 EBI LX3 "Initial release" 2018-05-16 RCSB #