data_LXI # _chem_comp.id LXI _chem_comp.name "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N8 O6 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-09 _chem_comp.pdbx_modified_date 2023-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 444.363 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LXI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U87 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LXI N1 N9 N 0 1 Y N N 14.111 9.462 41.609 -2.624 0.178 -0.275 N1 LXI 1 LXI C1 C8 C 0 1 Y N N 14.102 8.140 41.821 -2.373 1.078 -1.270 C1 LXI 2 LXI N2 N7 N 0 1 Y N N 12.873 7.693 41.602 -3.421 1.823 -1.465 N2 LXI 3 LXI C2 C5 C 0 1 Y N N 12.127 8.752 41.260 -4.404 1.448 -0.611 C2 LXI 4 LXI C3 C6 C 0 1 N N N 10.823 8.810 40.950 -5.727 1.890 -0.377 C3 LXI 5 LXI N3 N1 N 0 1 N N N 10.291 10.079 40.631 -6.450 1.270 0.583 N3 LXI 6 LXI C4 C2 C 0 1 N N N 11.147 11.194 40.642 -5.907 0.246 1.300 C4 LXI 7 LXI N4 N3 N 0 1 N N N 12.455 11.078 40.936 -4.679 -0.173 1.092 N4 LXI 8 LXI C5 C4 C 0 1 Y N N 12.897 9.851 41.253 -3.906 0.387 0.155 C5 LXI 9 LXI O1 O6 O 0 1 N N N 10.116 7.770 40.963 -6.203 2.807 -1.023 O1 LXI 10 LXI N5 N2 N 0 1 N N N 10.628 12.345 40.337 -6.665 -0.364 2.268 N5 LXI 11 LXI C6 C1* C 0 1 N N R 15.170 10.486 41.637 -1.693 -0.832 0.235 C6 LXI 12 LXI O2 O4* O 0 1 N N N 16.510 9.882 41.746 -0.329 -0.438 -0.029 O2 LXI 13 LXI C7 C2* C 0 1 N N R 14.983 11.435 42.747 -1.874 -2.164 -0.528 C7 LXI 14 LXI O3 O2* O 0 1 N N N 14.755 12.635 42.086 -2.693 -3.063 0.221 O3 LXI 15 LXI C8 C3* C 0 1 N N S 16.320 11.436 43.507 -0.438 -2.719 -0.658 C8 LXI 16 LXI O4 O3* O 0 1 N N N 17.041 12.609 43.114 -0.327 -3.980 0.004 O4 LXI 17 LXI C9 C4* C 0 1 N N R 17.125 10.161 43.051 0.440 -1.658 0.042 C9 LXI 18 LXI C10 C5* C 0 1 N N N 17.147 8.935 44.052 1.769 -1.493 -0.699 C10 LXI 19 LXI O5 O5* O 0 1 N N N 16.586 7.701 43.473 2.582 -0.540 -0.012 O5 LXI 20 LXI P1 P6* P 0 1 N N R 15.734 6.400 44.354 4.053 -0.119 -0.513 P1 LXI 21 LXI S1 S7* S 0 1 N N N 14.270 7.496 45.136 3.926 0.712 -2.459 S1 LXI 22 LXI O6 O8* O 0 1 N N N 16.737 6.489 45.511 4.925 -1.315 -0.543 O6 LXI 23 LXI N6 N10 N 0 1 Y N N 15.027 4.893 43.484 4.684 0.991 0.516 N6 LXI 24 LXI C11 C11 C 0 1 Y N N 13.928 4.278 43.972 4.644 2.359 0.369 C11 LXI 25 LXI C12 C12 C 0 1 Y N N 13.610 3.207 43.226 5.275 2.886 1.432 C12 LXI 26 LXI N7 N13 N 0 1 Y N N 14.500 3.112 42.245 5.695 1.878 2.216 N7 LXI 27 LXI C13 C14 C 0 1 Y N N 15.352 4.135 42.414 5.342 0.735 1.679 C13 LXI 28 LXI N8 N15 N 0 1 N N N 16.381 4.353 41.600 5.601 -0.521 2.203 N8 LXI 29 LXI H1 H1 H 0 1 N N N 14.950 7.541 42.119 -1.443 1.159 -1.813 H1 LXI 30 LXI H2 H2 H 0 1 N N N 9.323 10.182 40.402 -7.359 1.556 0.762 H2 LXI 31 LXI H3 H3 H 0 1 N N N 11.203 13.163 40.318 -7.573 -0.065 2.434 H3 LXI 32 LXI H4 H4 H 0 1 N N N 9.654 12.413 40.121 -6.292 -1.094 2.787 H4 LXI 33 LXI H5 H5 H 0 1 N N N 15.125 11.050 40.694 -1.845 -0.982 1.304 H5 LXI 34 LXI H6 H6 H 0 1 N N N 14.155 11.137 43.407 -2.304 -1.984 -1.513 H6 LXI 35 LXI H7 H7 H 0 1 N N N 14.619 13.327 42.723 -2.839 -3.915 -0.212 H7 LXI 36 LXI H8 H8 H 0 1 N N N 16.146 11.402 44.593 -0.158 -2.814 -1.707 H8 LXI 37 LXI H9 H9 H 0 1 N N N 17.874 12.636 43.569 -0.903 -4.667 -0.359 H9 LXI 38 LXI H10 H10 H 0 1 N N N 18.168 10.471 42.890 0.616 -1.936 1.081 H10 LXI 39 LXI H11 H11 H 0 1 N N N 18.190 8.741 44.344 2.286 -2.453 -0.735 H11 LXI 40 LXI H12 H12 H 0 1 N N N 16.560 9.201 44.943 1.578 -1.144 -1.714 H12 LXI 41 LXI H13 H13 H 0 1 N N N 14.768 7.828 46.290 3.017 1.692 -2.310 H13 LXI 42 LXI H14 H14 H 0 1 N N N 13.379 4.603 44.844 4.191 2.905 -0.445 H14 LXI 43 LXI H15 H15 H 0 1 N N N 12.777 2.540 43.394 5.420 3.939 1.624 H15 LXI 44 LXI H16 H16 H 0 1 N N N 16.395 3.653 40.886 6.161 -0.612 2.990 H16 LXI 45 LXI H17 H17 H 0 1 N N N 16.288 5.256 41.180 5.223 -1.309 1.783 H17 LXI 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LXI N5 C4 SING N N 1 LXI N3 C4 SING N N 2 LXI N3 C3 SING N N 3 LXI C4 N4 DOUB N N 4 LXI N4 C5 SING N N 5 LXI C3 O1 DOUB N N 6 LXI C3 C2 SING N N 7 LXI C5 C2 DOUB Y N 8 LXI C5 N1 SING Y N 9 LXI C2 N2 SING Y N 10 LXI N8 C13 SING N N 11 LXI N2 C1 DOUB Y N 12 LXI N1 C6 SING N N 13 LXI N1 C1 SING Y N 14 LXI C6 O2 SING N N 15 LXI C6 C7 SING N N 16 LXI O2 C9 SING N N 17 LXI O3 C7 SING N N 18 LXI N7 C13 DOUB Y N 19 LXI N7 C12 SING Y N 20 LXI C13 N6 SING Y N 21 LXI C7 C8 SING N N 22 LXI C9 C8 SING N N 23 LXI C9 C10 SING N N 24 LXI O4 C8 SING N N 25 LXI C12 C11 DOUB Y N 26 LXI O5 C10 SING N N 27 LXI O5 P1 SING N N 28 LXI N6 C11 SING Y N 29 LXI N6 P1 SING N N 30 LXI P1 S1 SING N N 31 LXI P1 O6 DOUB N N 32 LXI C1 H1 SING N N 33 LXI N3 H2 SING N N 34 LXI N5 H3 SING N N 35 LXI N5 H4 SING N N 36 LXI C6 H5 SING N N 37 LXI C7 H6 SING N N 38 LXI O3 H7 SING N N 39 LXI C8 H8 SING N N 40 LXI O4 H9 SING N N 41 LXI C9 H10 SING N N 42 LXI C10 H11 SING N N 43 LXI C10 H12 SING N N 44 LXI S1 H13 SING N N 45 LXI C11 H14 SING N N 46 LXI C12 H15 SING N N 47 LXI N8 H16 SING N N 48 LXI N8 H17 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LXI SMILES ACDLabs 12.01 "Nc1nccn1P(=O)(S)OCC1OC(n2cnc3c2N=C(N)NC3=O)C(O)C1O" LXI InChI InChI 1.03 "InChI=1S/C13H17N8O6PS/c14-12-18-9-6(10(24)19-12)17-4-20(9)11-8(23)7(22)5(27-11)3-26-28(25,29)21-2-1-16-13(21)15/h1-2,4-5,7-8,11,22-23H,3H2,(H2,15,16)(H,25,29)(H3,14,18,19,24)/t5-,7-,8-,11-,28-/m1/s1" LXI InChIKey InChI 1.03 KURJQYGWAXZKPO-RMPAVHDKSA-N LXI SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](S)(=O)n4ccnc4N)[C@@H](O)[C@H]3O" LXI SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](S)(=O)n4ccnc4N)[CH](O)[CH]3O" LXI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)[P@@](=O)(OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)S" LXI SMILES "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LXI "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" LXI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[[(2-azanylimidazol-1-yl)-sulfanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LXI "Create component" 2022-03-09 RCSB LXI "Initial release" 2023-03-15 RCSB #