data_LXR # _chem_comp.id LXR _chem_comp.name "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N8 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-09 _chem_comp.pdbx_modified_date 2023-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LXR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U8B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LXR C10 C1 C 0 1 Y N N 14.466 10.026 40.493 2.666 -0.924 -1.245 C10 LXR 1 LXR C13 C2 C 0 1 Y N N 16.420 8.974 43.093 -5.954 -1.107 0.514 C13 LXR 2 LXR C11 C3 C 0 1 Y N N 17.638 7.883 41.738 -4.003 -1.918 1.128 C11 LXR 3 LXR C12 C4 C 0 1 Y N N 16.406 7.378 41.671 -4.981 -2.588 1.760 C12 LXR 4 LXR N8 N1 N 0 1 N N N 15.971 9.838 43.998 -6.934 -0.348 -0.104 N8 LXR 5 LXR N9 N2 N 0 1 Y N N 15.641 8.056 42.521 -6.162 -2.079 1.370 N9 LXR 6 LXR N6 N3 N 0 1 Y N N 17.674 8.893 42.618 -4.612 -0.976 0.331 N6 LXR 7 LXR P1 P1 P 0 1 N N N 19.232 9.814 42.970 -3.863 0.104 -0.651 P1 LXR 8 LXR O2 O1 O 0 1 N N N 19.388 10.141 44.537 -3.671 -0.543 -2.112 O2 LXR 9 LXR O1 O2 O 0 1 N N N 20.518 9.281 42.498 -4.687 1.328 -0.757 O1 LXR 10 LXR O3 O3 O 0 1 N N N 19.200 11.317 42.357 -2.423 0.478 -0.036 O3 LXR 11 LXR C1 C5 C 0 1 N N N 18.308 12.290 42.880 -1.569 1.474 -0.604 C1 LXR 12 LXR C2 C6 C 0 1 N N R 17.382 12.809 41.768 -0.285 1.577 0.222 C2 LXR 13 LXR O4 O4 O 0 1 N N N 16.718 11.758 40.998 0.520 0.390 0.050 O4 LXR 14 LXR C3 C7 C 0 1 N N S 16.239 13.570 42.440 0.598 2.732 -0.299 C3 LXR 15 LXR O5 O5 O 0 1 N N N 16.633 14.947 42.690 0.418 3.901 0.504 O5 LXR 16 LXR C4 C8 C 0 1 N N R 15.045 13.421 41.459 2.040 2.195 -0.157 C4 LXR 17 LXR O6 O6 O 0 1 N N N 14.762 14.580 40.678 2.795 3.018 0.735 O6 LXR 18 LXR C5 C9 C 0 1 N N R 15.461 12.331 40.481 1.857 0.779 0.433 C5 LXR 19 LXR N5 N4 N 0 1 Y N N 14.332 11.353 40.336 2.840 -0.144 -0.141 N5 LXR 20 LXR N4 N5 N 0 1 Y N N 13.283 9.438 40.292 3.740 -1.623 -1.469 N4 LXR 21 LXR C8 C10 C 0 1 Y N N 12.392 10.411 40.014 4.671 -1.334 -0.529 C8 LXR 22 LXR C7 C11 C 0 1 Y N N 13.039 11.600 40.037 4.105 -0.381 0.335 C7 LXR 23 LXR N3 N6 N 0 1 Y N N 12.355 12.747 39.792 4.824 0.074 1.355 N3 LXR 24 LXR C6 C12 C 0 1 Y N N 10.963 12.716 39.500 6.051 -0.359 1.558 C6 LXR 25 LXR N1 N7 N 0 1 Y N N 10.326 11.453 39.468 6.625 -1.253 0.774 N1 LXR 26 LXR C9 C13 C 0 1 Y N N 11.069 10.355 39.727 5.983 -1.766 -0.272 C9 LXR 27 LXR N7 N8 N 0 1 N N N 10.503 9.144 39.717 6.593 -2.702 -1.088 N7 LXR 28 LXR H1 H1 H 0 1 N N N 15.384 9.515 40.742 1.767 -0.959 -1.843 H1 LXR 29 LXR H2 H2 H 0 1 N N N 18.484 7.530 41.167 -2.940 -2.086 1.226 H2 LXR 30 LXR H3 H3 H 0 1 N N N 16.086 6.563 41.039 -4.841 -3.397 2.463 H3 LXR 31 LXR H4 H4 H 0 1 N N N 14.997 9.678 44.158 -7.870 -0.517 0.086 H4 LXR 32 LXR H5 H5 H 0 1 N N N 16.474 9.716 44.854 -6.684 0.352 -0.726 H5 LXR 33 LXR H6 H6 H 0 1 N N N 20.268 9.923 44.820 -3.139 -1.351 -2.118 H6 LXR 34 LXR H7 H7 H 0 1 N N N 18.887 13.129 43.293 -1.320 1.197 -1.629 H7 LXR 35 LXR H8 H8 H 0 1 N N N 17.701 11.836 43.677 -2.081 2.436 -0.602 H8 LXR 36 LXR H9 H9 H 0 1 N N N 17.941 13.485 41.104 -0.524 1.726 1.275 H9 LXR 37 LXR H10 H10 H 0 1 N N N 15.983 13.072 43.387 0.369 2.947 -1.342 H10 LXR 38 LXR H11 H11 H 0 1 N N N 17.365 14.962 43.296 0.949 4.657 0.221 H11 LXR 39 LXR H12 H12 H 0 1 N N N 14.155 13.096 42.018 2.526 2.143 -1.131 H12 LXR 40 LXR H13 H13 H 0 1 N N N 14.497 15.291 41.250 2.889 3.934 0.440 H13 LXR 41 LXR H14 H14 H 0 1 N N N 15.654 12.796 39.503 1.949 0.805 1.519 H14 LXR 42 LXR H15 H15 H 0 1 N N N 10.412 13.625 39.309 6.608 0.031 2.396 H15 LXR 43 LXR H16 H16 H 0 1 N N N 9.530 9.232 39.501 7.500 -2.992 -0.900 H16 LXR 44 LXR H17 H17 H 0 1 N N N 10.947 8.574 39.026 6.114 -3.068 -1.848 H17 LXR 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LXR N1 C6 DOUB Y N 1 LXR N1 C9 SING Y N 2 LXR C6 N3 SING Y N 3 LXR N7 C9 SING N N 4 LXR C9 C8 DOUB Y N 5 LXR N3 C7 DOUB Y N 6 LXR C8 C7 SING Y N 7 LXR C8 N4 SING Y N 8 LXR C7 N5 SING Y N 9 LXR N4 C10 DOUB Y N 10 LXR N5 C5 SING N N 11 LXR N5 C10 SING Y N 12 LXR C5 O4 SING N N 13 LXR C5 C4 SING N N 14 LXR O6 C4 SING N N 15 LXR O4 C2 SING N N 16 LXR C4 C3 SING N N 17 LXR C12 C11 DOUB Y N 18 LXR C12 N9 SING Y N 19 LXR C11 N6 SING Y N 20 LXR C2 C3 SING N N 21 LXR C2 C1 SING N N 22 LXR O3 C1 SING N N 23 LXR O3 P1 SING N N 24 LXR C3 O5 SING N N 25 LXR O1 P1 DOUB N N 26 LXR N9 C13 DOUB Y N 27 LXR N6 P1 SING N N 28 LXR N6 C13 SING Y N 29 LXR P1 O2 SING N N 30 LXR C13 N8 SING N N 31 LXR C10 H1 SING N N 32 LXR C11 H2 SING N N 33 LXR C12 H3 SING N N 34 LXR N8 H4 SING N N 35 LXR N8 H5 SING N N 36 LXR O2 H6 SING N N 37 LXR C1 H7 SING N N 38 LXR C1 H8 SING N N 39 LXR C2 H9 SING N N 40 LXR C3 H10 SING N N 41 LXR O5 H11 SING N N 42 LXR C4 H12 SING N N 43 LXR O6 H13 SING N N 44 LXR C5 H14 SING N N 45 LXR C6 H15 SING N N 46 LXR N7 H16 SING N N 47 LXR N7 H17 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LXR SMILES ACDLabs 12.01 "Nc1nccn1P(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" LXR InChI InChI 1.03 "InChI=1S/C13H17N8O6P/c14-10-7-11(18-4-17-10)20(5-19-7)12-9(23)8(22)6(27-12)3-26-28(24,25)21-2-1-16-13(21)15/h1-2,4-6,8-9,12,22-23H,3H2,(H2,15,16)(H,24,25)(H2,14,17,18)/t6-,8-,9-,12-/m1/s1" LXR InChIKey InChI 1.03 VRUNWCWGNRYOCC-WOUKDFQISA-N LXR SMILES_CANONICAL CACTVS 3.385 "Nc1nccn1[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" LXR SMILES CACTVS 3.385 "Nc1nccn1[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" LXR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" LXR SMILES "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LXR "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine" LXR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(2-azanylimidazol-1-yl)phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LXR "Create component" 2022-03-09 RCSB LXR "Initial release" 2023-03-15 RCSB #