data_M41 # _chem_comp.id M41 _chem_comp.name "N-(benzylsulfonyl)-D-valyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 Cl N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-25 _chem_comp.pdbx_modified_date 2012-04-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.072 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M41 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RMN _chem_comp.pdbx_subcomponent_list "PMS DVA PRO 00T" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M41 C7 C7 C 0 1 N N N 15.943 -18.374 22.061 -5.563 0.618 0.334 C PMS 1 M41 S8 S8 S 0 1 N N N 15.480 -16.775 21.896 -4.218 0.704 -0.880 S PMS 2 M41 C4 C4 C 0 1 Y N N 15.207 -19.041 23.207 -6.848 0.253 -0.364 C1 PMS 3 M41 C5 C5 C 0 1 Y N N 13.902 -19.503 23.048 -7.203 -1.075 -0.507 C2 PMS 4 M41 C6 C6 C 0 1 Y N N 13.242 -20.110 24.115 -8.382 -1.410 -1.147 C3 PMS 5 M41 C1 C1 C 0 1 Y N N 13.889 -20.257 25.338 -9.205 -0.417 -1.644 C4 PMS 6 M41 C2 C2 C 0 1 Y N N 15.192 -19.799 25.499 -8.849 0.912 -1.501 C5 PMS 7 M41 C33 C33 C 0 1 Y N N 15.849 -19.195 24.434 -7.670 1.246 -0.861 C6 PMS 8 M41 O12 O12 O 0 1 N N N 15.960 -16.299 20.635 -3.922 -0.589 -1.389 O2S PMS 9 M41 O13 O13 O 0 1 N N N 14.053 -16.706 22.012 -4.405 1.809 -1.754 O1S PMS 10 M41 N9 N9 N 0 1 N N N 16.140 -15.933 23.103 -2.882 1.109 0.010 N DVA 11 M41 C10 C10 C 0 1 N N R 17.271 -15.050 22.938 -2.365 0.181 1.019 CA DVA 12 M41 C14 C14 C 0 1 N N N 17.809 -14.723 24.334 -2.939 0.546 2.390 CB DVA 13 M41 C15 C15 C 0 1 N N N 17.944 -15.962 25.220 -2.457 -0.467 3.430 CG1 DVA 14 M41 C16 C16 C 0 1 N N N 19.125 -13.958 24.257 -2.465 1.947 2.784 CG2 DVA 15 M41 C11 C11 C 0 1 N N N 16.903 -13.743 22.286 -0.862 0.272 1.063 C DVA 16 M41 O22 O22 O 0 1 N N N 15.962 -13.098 22.723 -0.311 1.324 0.816 O DVA 17 M41 N17 N17 N 0 1 N N N 17.640 -13.330 21.257 -0.129 -0.814 1.377 N PRO 18 M41 C18 C18 C 0 1 N N S 17.336 -12.054 20.599 1.329 -0.841 1.561 CA PRO 19 M41 C23 C23 C 0 1 N N N 15.874 -11.894 20.300 2.014 -0.392 0.296 C PRO 20 M41 O32 O32 O 0 1 N N N 15.248 -12.806 19.781 1.354 -0.078 -0.672 O PRO 21 M41 C19 C19 C 0 1 N N N 18.153 -12.087 19.308 1.724 -2.297 1.883 CB PRO 22 M41 C20 C20 C 0 1 N N N 19.253 -13.112 19.536 0.538 -3.115 1.305 CG PRO 23 M41 C21 C21 C 0 1 N N N 18.786 -14.019 20.669 -0.658 -2.172 1.599 CD PRO 24 M41 N24 N24 N 0 1 N N N 15.280 -10.741 20.625 3.359 -0.339 0.240 N19 00T 25 M41 C25 C25 C 0 1 N N N 13.865 -10.493 20.360 4.025 0.097 -0.990 C10 00T 26 M41 C26 C26 C 0 1 Y N N 12.996 -10.494 21.610 5.518 0.067 -0.791 C6 00T 27 M41 C27 C27 C 0 1 Y N N 12.207 -11.594 21.924 6.204 -1.130 -0.885 C5 00T 28 M41 C34 C34 C 0 1 N N N 12.228 -12.823 21.042 5.457 -2.403 -1.188 C32 00T 29 M41 N35 N35 N 0 1 N N N 13.021 -13.879 21.651 5.190 -2.484 -2.630 N33 00T 30 M41 C28 C28 C 0 1 Y N N 11.403 -11.585 23.058 7.574 -1.158 -0.702 C4 00T 31 M41 C29 C29 C 0 1 Y N N 11.364 -10.460 23.875 8.259 0.009 -0.425 C3 00T 32 M41 C30 C30 C 0 1 Y N N 12.149 -9.356 23.552 7.574 1.207 -0.330 C2 00T 33 M41 CL3 CL3 CL 0 0 N N N 12.125 -7.902 24.606 8.433 2.675 0.019 CL1 00T 34 M41 C31 C31 C 0 1 Y N N 12.963 -9.374 22.430 6.203 1.237 -0.519 C7 00T 35 M41 H7 H7 H 0 1 N N N 17.024 -18.414 22.260 -5.676 1.587 0.820 H2A PMS 36 M41 H7A H7A H 0 1 N N N 15.712 -18.910 21.129 -5.328 -0.138 1.083 H1 PMS 37 M41 H5 H5 H 0 1 N N N 13.402 -19.391 22.097 -6.560 -1.851 -0.120 H2 PMS 38 M41 H6 H6 H 0 1 N N N 12.230 -20.466 23.993 -8.660 -2.447 -1.258 H3 PMS 39 M41 H1 H1 H 0 1 N N N 13.378 -20.728 26.164 -10.128 -0.678 -2.140 H4 PMS 40 M41 H2 H2 H 0 1 N N N 15.692 -19.912 26.449 -9.492 1.688 -1.889 H5 PMS 41 M41 H33 H33 H 0 1 N N N 16.863 -18.843 24.558 -7.392 2.284 -0.750 H6 PMS 42 M41 HN9 HN9 H 0 1 N N N 15.403 -15.349 23.444 -2.441 1.961 -0.136 H DVA 43 M41 H10 H10 H 0 1 N N N 18.004 -15.559 22.295 -2.660 -0.837 0.761 HA DVA 44 M41 H14 H14 H 0 1 N N N 17.061 -14.073 24.811 -4.028 0.530 2.344 HB DVA 45 M41 H15 H15 H 0 1 N N N 18.333 -15.668 26.206 -1.367 -0.482 3.445 HG11 DVA 46 M41 H15A H15A H 0 0 N N N 16.958 -16.435 25.341 -2.830 -0.182 4.414 HG12 DVA 47 M41 H15B H15B H 0 0 N N N 18.638 -16.675 24.750 -2.831 -1.458 3.173 HG13 DVA 48 M41 H16 H16 H 0 1 N N N 19.483 -13.740 25.274 -2.809 2.668 2.042 HG21 DVA 49 M41 H16A H16A H 0 0 N N N 19.873 -14.567 23.728 -2.874 2.207 3.760 HG22 DVA 50 M41 H16B H16B H 0 0 N N N 18.969 -13.015 23.713 -1.376 1.963 2.829 HG23 DVA 51 M41 H18 H18 H 0 1 N N N 17.589 -11.201 21.246 1.610 -0.189 2.388 HA PRO 52 M41 H19 H19 H 0 1 N N N 17.521 -12.379 18.456 2.656 -2.564 1.384 HB2 PRO 53 M41 H19A H19A H 0 0 N N N 18.583 -11.097 19.095 1.806 -2.446 2.960 HB3 PRO 54 M41 H20 H20 H 0 1 N N N 19.424 -13.699 18.622 0.660 -3.275 0.234 HG2 PRO 55 M41 H20A H20A H 0 0 N N N 20.192 -12.610 19.811 0.425 -4.063 1.830 HG3 PRO 56 M41 H21 H21 H 0 1 N N N 19.583 -14.163 21.413 -0.990 -2.287 2.631 HD2 PRO 57 M41 H21A H21A H 0 0 N N N 18.497 -15.009 20.287 -1.479 -2.377 0.911 HD3 PRO 58 M41 HN24 HN24 H 0 0 N N N 15.822 -10.025 21.064 3.887 -0.590 1.014 HN19 00T 59 M41 H25 H25 H 0 1 N N N 13.775 -9.506 19.884 3.753 -0.571 -1.807 H10 00T 60 M41 H25A H25A H 0 0 N N N 13.500 -11.286 19.690 3.711 1.113 -1.232 H10A 00T 61 M41 H34 H34 H 0 1 N N N 11.198 -13.182 20.902 6.059 -3.259 -0.881 H32 00T 62 M41 H34A H34A H 0 0 N N N 12.668 -12.559 20.069 4.513 -2.409 -0.643 H32A 00T 63 M41 HN35 HN35 H 0 0 N N N 13.023 -14.681 21.054 6.046 -2.415 -3.160 HN33 00T 64 M41 HN3A HN3A H 0 0 N N N 13.959 -13.558 21.781 4.690 -3.330 -2.858 HN3A 00T 65 M41 H28 H28 H 0 1 N N N 10.808 -12.452 23.305 8.109 -2.094 -0.776 H4 00T 66 M41 H29 H29 H 0 1 N N N 10.732 -10.443 24.750 9.329 -0.014 -0.281 H3 00T 67 M41 H31 H31 H 0 1 N N N 13.573 -8.515 22.193 5.668 2.172 -0.450 H7 00T 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M41 C1 C2 DOUB Y N 1 M41 C1 C6 SING Y N 2 M41 C2 C33 SING Y N 3 M41 CL3 C30 SING N N 4 M41 C4 C5 SING Y N 5 M41 C4 C7 SING N N 6 M41 C4 C33 DOUB Y N 7 M41 C5 C6 DOUB Y N 8 M41 C7 S8 SING N N 9 M41 S8 N9 SING N N 10 M41 S8 O12 DOUB N N 11 M41 S8 O13 DOUB N N 12 M41 N9 C10 SING N N 13 M41 C10 C11 SING N N 14 M41 C10 C14 SING N N 15 M41 C11 N17 SING N N 16 M41 C11 O22 DOUB N N 17 M41 C14 C15 SING N N 18 M41 C14 C16 SING N N 19 M41 N17 C18 SING N N 20 M41 N17 C21 SING N N 21 M41 C18 C19 SING N N 22 M41 C18 C23 SING N N 23 M41 C19 C20 SING N N 24 M41 C20 C21 SING N N 25 M41 C23 N24 SING N N 26 M41 C23 O32 DOUB N N 27 M41 N24 C25 SING N N 28 M41 C25 C26 SING N N 29 M41 C26 C27 DOUB Y N 30 M41 C26 C31 SING Y N 31 M41 C27 C28 SING Y N 32 M41 C27 C34 SING N N 33 M41 C28 C29 DOUB Y N 34 M41 C29 C30 SING Y N 35 M41 C30 C31 DOUB Y N 36 M41 C34 N35 SING N N 37 M41 C1 H1 SING N N 38 M41 C2 H2 SING N N 39 M41 C5 H5 SING N N 40 M41 C6 H6 SING N N 41 M41 C7 H7 SING N N 42 M41 C7 H7A SING N N 43 M41 N9 HN9 SING N N 44 M41 C10 H10 SING N N 45 M41 C14 H14 SING N N 46 M41 C15 H15 SING N N 47 M41 C15 H15A SING N N 48 M41 C15 H15B SING N N 49 M41 C16 H16 SING N N 50 M41 C16 H16A SING N N 51 M41 C16 H16B SING N N 52 M41 C18 H18 SING N N 53 M41 C19 H19 SING N N 54 M41 C19 H19A SING N N 55 M41 C20 H20 SING N N 56 M41 C20 H20A SING N N 57 M41 C21 H21 SING N N 58 M41 C21 H21A SING N N 59 M41 N24 HN24 SING N N 60 M41 C25 H25 SING N N 61 M41 C25 H25A SING N N 62 M41 C28 H28 SING N N 63 M41 C29 H29 SING N N 64 M41 C31 H31 SING N N 65 M41 C33 H33 SING N N 66 M41 C34 H34 SING N N 67 M41 C34 H34A SING N N 68 M41 N35 HN35 SING N N 69 M41 N35 HN3A SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M41 SMILES ACDLabs 12.01 "O=C(NCc1cc(Cl)ccc1CN)C3N(C(=O)C(NS(=O)(=O)Cc2ccccc2)C(C)C)CCC3" M41 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@@H](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3cc(Cl)ccc3CN" M41 SMILES CACTVS 3.370 "CC(C)[CH](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3cc(Cl)ccc3CN" M41 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(C)[C@H](C(=O)N1CCC[C@H]1C(=O)NCc2cc(ccc2CN)Cl)NS(=O)(=O)Cc3ccccc3" M41 SMILES "OpenEye OEToolkits" 1.7.2 "CC(C)C(C(=O)N1CCCC1C(=O)NCc2cc(ccc2CN)Cl)NS(=O)(=O)Cc3ccccc3" M41 InChI InChI 1.03 "InChI=1S/C25H33ClN4O4S/c1-17(2)23(29-35(33,34)16-18-7-4-3-5-8-18)25(32)30-12-6-9-22(30)24(31)28-15-20-13-21(26)11-10-19(20)14-27/h3-5,7-8,10-11,13,17,22-23,29H,6,9,12,14-16,27H2,1-2H3,(H,28,31)/t22-,23+/m0/s1" M41 InChIKey InChI 1.03 PWCVAVZHMMVMMM-XZOQPEGZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M41 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)-D-valyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide" M41 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N-[[2-(aminomethyl)-5-chloranyl-phenyl]methyl]-1-[(2R)-3-methyl-2-[(phenylmethyl)sulfonylamino]butanoyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M41 "Create component" 2011-04-25 PDBJ M41 "Modify aromatic_flag" 2011-06-04 RCSB M41 "Modify descriptor" 2011-06-04 RCSB #