data_M6D # _chem_comp.id M6D _chem_comp.name 6-O-phosphono-beta-D-mannopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 O9 P" _chem_comp.mon_nstd_parent_comp_id BMA _chem_comp.pdbx_synonyms "beta-D-mannose-6-phosphate; 6-O-phosphono-beta-D-mannose; 6-O-phosphono-D-mannose; 6-O-phosphono-mannose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-11-21 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RL8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 M6D beta-D-mannose-6-phosphate PDB ? 2 M6D 6-O-phosphono-beta-D-mannose PDB ? 3 M6D 6-O-phosphono-D-mannose PDB ? 4 M6D 6-O-phosphono-mannose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M6D C1 C1 C 0 1 N N R 10.101 16.341 34.525 2.124 -1.502 0.636 C1 M6D 1 M6D C2 C2 C 0 1 N N S 10.708 16.423 33.093 3.267 -0.626 0.116 C2 M6D 2 M6D C3 C3 C 0 1 N N S 12.212 16.027 33.164 2.978 0.837 0.465 C3 M6D 3 M6D C4 C4 C 0 1 N N S 12.962 16.959 34.144 1.623 1.235 -0.128 C4 M6D 4 M6D C5 C5 C 0 1 N N R 12.305 16.840 35.550 0.544 0.287 0.402 C5 M6D 5 M6D C6 C6 C 0 1 N N N 12.969 17.780 36.553 -0.802 0.640 -0.233 C6 M6D 6 M6D O1 O1 O 0 1 N Y N 8.764 16.795 34.520 2.359 -2.862 0.265 O1 M6D 7 M6D O2 O2 O 0 1 N N N 10.588 17.760 32.594 3.368 -0.767 -1.303 O2 M6D 8 M6D O3 O3 O 0 1 N N N 12.803 16.117 31.875 4.003 1.670 -0.080 O3 M6D 9 M6D O4 O4 O 0 1 N N N 14.340 16.582 34.200 1.310 2.576 0.253 O4 M6D 10 M6D O5 O5 O 0 1 N N N 10.874 17.194 35.448 0.890 -1.059 0.069 O5 M6D 11 M6D O6 O6 O 0 1 N N N 12.438 17.727 37.881 -1.829 -0.167 0.347 O6 M6D 12 M6D P P P 0 1 N N N 12.325 19.004 38.822 -3.376 -0.062 -0.085 P M6D 13 M6D O1P O1P O 0 1 N N N 13.681 19.613 39.048 -4.224 -1.201 0.674 O1P M6D 14 M6D O2P O2P O 0 1 N N N 11.755 18.616 40.174 -3.948 1.389 0.315 O2P M6D 15 M6D O3P O3P O 0 1 N N N 11.427 20.043 38.191 -3.494 -0.252 -1.548 O3P M6D 16 M6D H1 H1 H 0 1 N N N 10.138 15.292 34.853 2.074 -1.426 1.722 H1 M6D 17 M6D H2 H2 H 0 1 N N N 10.170 15.739 32.420 4.203 -0.934 0.581 H2 M6D 18 M6D H3 H3 H 0 1 N N N 12.285 14.990 33.524 2.950 0.954 1.549 H3 M6D 19 M6D H4 H4 H 0 1 N N N 12.899 18.003 33.802 1.668 1.166 -1.215 H4 M6D 20 M6D H5 H5 H 0 1 N N N 12.429 15.805 35.900 0.473 0.387 1.485 H5 M6D 21 M6D H61 H6 H 0 1 N N N 14.034 17.509 36.609 -1.023 1.692 -0.056 H61 M6D 22 M6D H62 H6A H 0 1 N N N 12.785 18.801 36.188 -0.757 0.454 -1.307 H62 M6D 23 M6D HO1 HO1 H 0 1 N Y N 8.460 16.897 35.414 1.673 -3.475 0.562 HO1 M6D 24 M6D HO2 HO2 H 0 1 N Y N 10.561 18.369 33.322 3.546 -1.671 -1.597 HO2 M6D 25 M6D HO3 HO3 H 0 1 N Y N 12.121 16.137 31.214 4.890 1.469 0.247 HO3 M6D 26 M6D HO4 HO4 H 0 1 N Y N 14.682 16.498 33.318 1.955 3.231 -0.046 HO4 M6D 27 M6D HO1P HO1P H 0 0 N N N 14.114 19.741 38.212 -5.167 -1.197 0.460 HO1P M6D 28 M6D HO2P HO2P H 0 0 N N N 12.461 18.535 40.804 -3.902 1.582 1.261 HO2P M6D 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M6D C2 C1 SING N N 1 M6D O1 C1 SING N N 2 M6D C1 O5 SING N N 3 M6D C1 H1 SING N N 4 M6D O2 C2 SING N N 5 M6D C2 C3 SING N N 6 M6D C2 H2 SING N N 7 M6D O3 C3 SING N N 8 M6D C3 C4 SING N N 9 M6D C3 H3 SING N N 10 M6D C4 O4 SING N N 11 M6D C4 C5 SING N N 12 M6D C4 H4 SING N N 13 M6D O5 C5 SING N N 14 M6D C5 C6 SING N N 15 M6D C5 H5 SING N N 16 M6D C6 O6 SING N N 17 M6D C6 H61 SING N N 18 M6D C6 H62 SING N N 19 M6D O1 HO1 SING N N 20 M6D O2 HO2 SING N N 21 M6D O3 HO3 SING N N 22 M6D O4 HO4 SING N N 23 M6D O6 P SING N N 24 M6D O3P P DOUB N N 25 M6D P O1P SING N N 26 M6D P O2P SING N N 27 M6D O1P HO1P SING N N 28 M6D O2P HO2P SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M6D SMILES ACDLabs 10.04 "O=P(O)(O)OCC1OC(O)C(O)C(O)C1O" M6D SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O" M6D SMILES CACTVS 3.341 "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O" M6D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)OP(=O)(O)O" M6D SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O" M6D InChI InChI 1.03 "InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6-/m1/s1" M6D InChIKey InChI 1.03 NBSCHQHZLSJFNQ-RWOPYEJCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M6D "SYSTEMATIC NAME" ACDLabs 10.04 6-O-phosphono-beta-D-mannopyranose M6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methyl dihydrogen phosphate" M6D "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Manp6PO3 # _pdbx_chem_comp_related.comp_id M6D _pdbx_chem_comp_related.related_comp_id BMA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 M6D C1 BMA C1 "Carbohydrate core" 2 M6D C2 BMA C2 "Carbohydrate core" 3 M6D C3 BMA C3 "Carbohydrate core" 4 M6D C4 BMA C4 "Carbohydrate core" 5 M6D C5 BMA C5 "Carbohydrate core" 6 M6D C6 BMA C6 "Carbohydrate core" 7 M6D O1 BMA O1 "Carbohydrate core" 8 M6D O2 BMA O2 "Carbohydrate core" 9 M6D O3 BMA O3 "Carbohydrate core" 10 M6D O4 BMA O4 "Carbohydrate core" 11 M6D O5 BMA O5 "Carbohydrate core" 12 M6D O6 BMA O6 "Carbohydrate core" 13 M6D H1 BMA H1 "Carbohydrate core" 14 M6D H2 BMA H2 "Carbohydrate core" 15 M6D H3 BMA H3 "Carbohydrate core" 16 M6D H4 BMA H4 "Carbohydrate core" 17 M6D H5 BMA H5 "Carbohydrate core" 18 M6D H61 BMA H61 "Carbohydrate core" 19 M6D H62 BMA H62 "Carbohydrate core" 20 M6D HO1 BMA HO1 "Carbohydrate core" 21 M6D HO2 BMA HO2 "Carbohydrate core" 22 M6D HO3 BMA HO3 "Carbohydrate core" 23 M6D HO4 BMA HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support M6D "CARBOHYDRATE ISOMER" D PDB ? M6D "CARBOHYDRATE RING" pyranose PDB ? M6D "CARBOHYDRATE ANOMER" beta PDB ? M6D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M6D "Create component" 2007-11-21 RCSB M6D "Modify descriptor" 2011-06-04 RCSB M6D "Other modification" 2020-07-03 RCSB M6D "Modify parent residue" 2020-07-17 RCSB M6D "Modify synonyms" 2020-07-17 RCSB M6D "Modify internal type" 2020-07-17 RCSB M6D "Modify linking type" 2020-07-17 RCSB M6D "Modify atom id" 2020-07-17 RCSB M6D "Modify component atom id" 2020-07-17 RCSB M6D "Modify leaving atom flag" 2020-07-17 RCSB ##