data_M9B # _chem_comp.id M9B _chem_comp.name "1-alpha-hydroxy-vitamin D3" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H44 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-08 _chem_comp.pdbx_modified_date 2020-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.637 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M9B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6T0H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M9B C4 C1 C 0 1 N N N -13.234 5.626 -13.766 5.799 0.111 -0.482 C4 M9B 1 M9B C14 C2 C 0 1 N N S -9.564 9.607 -10.349 -0.043 1.808 1.174 C14 M9B 2 M9B C5 C3 C 0 1 N N N -12.519 6.940 -13.546 4.446 0.045 0.198 C5 M9B 3 M9B C6 C4 C 0 1 N N N -12.426 7.788 -14.737 4.195 -1.120 1.070 C6 M9B 4 M9B C11 C5 C 0 1 N N N -8.404 7.001 -10.794 0.384 3.247 -1.365 C11 M9B 5 M9B C7 C6 C 0 1 N N N -12.018 7.225 -12.310 3.516 1.005 0.015 C7 M9B 6 M9B C8 C7 C 0 1 N N N -11.311 8.439 -11.843 2.220 0.907 0.690 C8 M9B 7 M9B C9 C8 C 0 1 N N N -10.335 8.409 -10.889 1.301 1.855 0.510 C9 M9B 8 M9B C10 C9 C 0 1 N N N -9.858 7.097 -10.320 1.540 3.063 -0.384 C10 M9B 9 M9B C12 C10 C 0 1 N N N -7.550 8.211 -10.379 -0.972 3.178 -0.665 C12 M9B 10 M9B C13 C11 C 0 1 N N R -8.145 9.511 -10.905 -1.081 1.834 0.016 C13 M9B 11 M9B C3 C12 C 0 1 N N R -14.561 5.836 -14.506 6.102 -1.263 -1.089 C3 M9B 12 M9B O O1 O 0 1 N N N -15.516 6.484 -13.648 7.397 -1.241 -1.692 O M9B 13 M9B C1 C13 C 0 1 N N S -13.674 7.984 -15.576 4.643 -2.472 0.550 C1 M9B 14 M9B C15 C14 C 0 1 N N N -10.020 11.035 -10.627 -0.410 0.507 1.892 C15 M9B 15 M9B C16 C15 C 0 1 N N N -8.712 11.839 -10.495 -1.964 0.552 1.910 C16 M9B 16 M9B C17 C16 C 0 1 N N R -7.571 10.822 -10.333 -2.389 1.477 0.704 C17 M9B 17 M9B C18 C17 C 0 1 N N N -8.182 9.588 -12.430 -0.733 0.730 -0.985 C18 M9B 18 M9B C19 C18 C 0 1 N N N -11.280 8.328 -15.109 3.604 -0.990 2.258 C19 M9B 19 M9B C2 C19 C 0 1 N N N -14.352 6.631 -15.802 6.068 -2.331 0.005 C2 M9B 20 M9B C20 C20 C 0 1 N N R -6.171 11.207 -10.906 -3.308 0.724 -0.261 C20 M9B 21 M9B C21 C21 C 0 1 N N N -5.109 11.267 -9.799 -3.726 1.656 -1.400 C21 M9B 22 M9B C22 C22 C 0 1 N N N -6.080 12.478 -11.778 -4.553 0.246 0.489 C22 M9B 23 M9B C23 C23 C 0 1 N N N -4.890 12.447 -12.770 -5.412 -0.612 -0.442 C23 M9B 24 M9B C24 C24 C 0 1 N N N -4.678 13.734 -13.580 -6.657 -1.089 0.308 C24 M9B 25 M9B C25 C25 C 0 1 N N N -3.681 13.606 -14.748 -7.516 -1.948 -0.623 C25 M9B 26 M9B C26 C26 C 0 1 N N N -4.169 12.627 -15.798 -6.752 -3.221 -0.992 C26 M9B 27 M9B C27 C27 C 0 1 N N N -3.328 14.915 -15.495 -8.819 -2.322 0.085 C27 M9B 28 M9B O1 O2 O 0 1 N N N -13.344 8.614 -16.836 3.767 -2.899 -0.495 O1 M9B 29 M9B H1 H1 H 0 1 N N N -13.437 5.160 -12.791 5.778 0.864 -1.270 H1 M9B 30 M9B H2 H2 H 0 1 N N N -12.591 4.963 -14.363 6.566 0.367 0.249 H2 M9B 31 M9B H3 H3 H 0 1 N N N -9.497 9.490 -9.257 -0.176 2.664 1.835 H3 M9B 32 M9B H4 H4 H 0 1 N N N -8.398 6.929 -11.892 0.481 4.215 -1.857 H4 M9B 33 M9B H5 H5 H 0 1 N N N -7.956 6.093 -10.365 0.435 2.461 -2.118 H5 M9B 34 M9B H6 H6 H 0 1 N N N -12.157 6.455 -11.565 3.727 1.847 -0.628 H6 M9B 35 M9B H7 H7 H 0 1 N N N -11.579 9.391 -12.277 2.009 0.065 1.334 H7 M9B 36 M9B H8 H8 H 0 1 N N N -9.913 7.103 -9.221 2.465 2.918 -0.943 H8 M9B 37 M9B H9 H9 H 0 1 N N N -10.454 6.260 -10.712 1.632 3.956 0.235 H9 M9B 38 M9B H10 H10 H 0 1 N N N -6.535 8.090 -10.786 -1.043 3.968 0.083 H10 M9B 39 M9B H11 H11 H 0 1 N N N -7.502 8.257 -9.281 -1.772 3.289 -1.397 H11 M9B 40 M9B H12 H12 H 0 1 N N N -14.948 4.844 -14.783 5.353 -1.498 -1.846 H12 M9B 41 M9B H13 H13 H 0 1 N N N -15.627 5.973 -12.855 7.490 -0.590 -2.401 H13 M9B 42 M9B H14 H14 H 0 1 N N N -14.369 8.628 -15.018 4.630 -3.200 1.360 H14 M9B 43 M9B H15 H15 H 0 1 N N N -10.765 11.365 -9.888 -0.055 -0.360 1.334 H15 M9B 44 M9B H16 H16 H 0 1 N N N -10.442 11.127 -11.639 -0.012 0.505 2.906 H16 M9B 45 M9B H17 H17 H 0 1 N N N -8.550 12.447 -11.397 -2.369 -0.451 1.771 H17 M9B 46 M9B H18 H18 H 0 1 N N N -8.760 12.496 -9.614 -2.316 0.970 2.853 H18 M9B 47 M9B H19 H19 H 0 1 N N N -7.435 10.665 -9.253 -2.882 2.377 1.072 H19 M9B 48 M9B H20 H20 H 0 1 N N N -8.621 10.548 -12.739 0.317 0.812 -1.266 H20 M9B 49 M9B H21 H21 H 0 1 N N N -7.159 9.509 -12.826 -0.912 -0.243 -0.529 H21 M9B 50 M9B H22 H22 H 0 1 N N N -8.792 8.762 -12.824 -1.356 0.836 -1.873 H22 M9B 51 M9B H23 H23 H 0 1 N N N -10.385 8.148 -14.531 3.296 -0.014 2.603 H23 M9B 52 M9B H24 H24 H 0 1 N N N -11.237 8.950 -15.991 3.434 -1.860 2.875 H24 M9B 53 M9B H25 H25 H 0 1 N N N -15.333 6.805 -16.268 6.393 -3.285 -0.410 H25 M9B 54 M9B H26 H26 H 0 1 N N N -13.725 6.035 -16.481 6.739 -2.042 0.814 H26 M9B 55 M9B H27 H27 H 0 1 N N N -5.878 10.373 -11.560 -2.779 -0.136 -0.671 H27 M9B 56 M9B H28 H28 H 0 1 N N N -5.174 10.361 -9.178 -2.846 1.944 -1.975 H28 M9B 57 M9B H29 H29 H 0 1 N N N -4.109 11.329 -10.253 -4.433 1.142 -2.050 H29 M9B 58 M9B H30 H30 H 0 1 N N N -5.282 12.154 -9.172 -4.196 2.548 -0.986 H30 M9B 59 M9B H31 H31 H 0 1 N N N -5.963 13.349 -11.117 -4.252 -0.345 1.354 H31 M9B 60 M9B H32 H32 H 0 1 N N N -7.013 12.577 -12.352 -5.130 1.109 0.823 H32 M9B 61 M9B H33 H33 H 0 1 N N N -5.060 11.623 -13.479 -5.713 -0.020 -1.306 H33 M9B 62 M9B H34 H34 H 0 1 N N N -3.973 12.252 -12.195 -4.835 -1.474 -0.775 H34 M9B 63 M9B H35 H35 H 0 1 N N N -4.306 14.511 -12.896 -6.356 -1.681 1.173 H35 M9B 64 M9B H36 H36 H 0 1 N N N -5.650 14.043 -13.992 -7.234 -0.227 0.642 H36 M9B 65 M9B H37 H37 H 0 1 N N N -2.744 13.207 -14.334 -7.743 -1.385 -1.529 H37 M9B 66 M9B H38 H38 H 0 1 N N N -4.435 11.674 -15.317 -5.823 -2.954 -1.497 H38 M9B 67 M9B H39 H39 H 0 1 N N N -5.054 13.042 -16.303 -6.524 -3.783 -0.086 H39 M9B 68 M9B H40 H40 H 0 1 N N N -3.373 12.455 -16.537 -7.363 -3.832 -1.656 H40 M9B 69 M9B H41 H41 H 0 1 N N N -2.966 15.663 -14.774 -9.363 -1.415 0.348 H41 M9B 70 M9B H42 H42 H 0 1 N N N -2.543 14.713 -16.238 -9.431 -2.933 -0.578 H42 M9B 71 M9B H43 H43 H 0 1 N N N -4.224 15.300 -16.004 -8.592 -2.884 0.991 H43 M9B 72 M9B H44 H44 H 0 1 N N N -12.925 9.451 -16.672 2.845 -2.993 -0.222 H44 M9B 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M9B O1 C1 SING N N 1 M9B C2 C1 SING N N 2 M9B C2 C3 SING N N 3 M9B C26 C25 SING N N 4 M9B C1 C6 SING N N 5 M9B C27 C25 SING N N 6 M9B C19 C6 DOUB N N 7 M9B C25 C24 SING N N 8 M9B C6 C5 SING N N 9 M9B C3 C4 SING N N 10 M9B C3 O SING N N 11 M9B C4 C5 SING N N 12 M9B C24 C23 SING N N 13 M9B C5 C7 DOUB N Z 14 M9B C23 C22 SING N N 15 M9B C18 C13 SING N N 16 M9B C7 C8 SING N N 17 M9B C8 C9 DOUB N E 18 M9B C22 C20 SING N N 19 M9B C20 C17 SING N N 20 M9B C20 C21 SING N N 21 M9B C13 C12 SING N N 22 M9B C13 C14 SING N N 23 M9B C13 C17 SING N N 24 M9B C9 C14 SING N N 25 M9B C9 C10 SING N N 26 M9B C11 C12 SING N N 27 M9B C11 C10 SING N N 28 M9B C15 C16 SING N N 29 M9B C15 C14 SING N N 30 M9B C16 C17 SING N N 31 M9B C4 H1 SING N N 32 M9B C4 H2 SING N N 33 M9B C14 H3 SING N N 34 M9B C11 H4 SING N N 35 M9B C11 H5 SING N N 36 M9B C7 H6 SING N N 37 M9B C8 H7 SING N N 38 M9B C10 H8 SING N N 39 M9B C10 H9 SING N N 40 M9B C12 H10 SING N N 41 M9B C12 H11 SING N N 42 M9B C3 H12 SING N N 43 M9B O H13 SING N N 44 M9B C1 H14 SING N N 45 M9B C15 H15 SING N N 46 M9B C15 H16 SING N N 47 M9B C16 H17 SING N N 48 M9B C16 H18 SING N N 49 M9B C17 H19 SING N N 50 M9B C18 H20 SING N N 51 M9B C18 H21 SING N N 52 M9B C18 H22 SING N N 53 M9B C19 H23 SING N N 54 M9B C19 H24 SING N N 55 M9B C2 H25 SING N N 56 M9B C2 H26 SING N N 57 M9B C20 H27 SING N N 58 M9B C21 H28 SING N N 59 M9B C21 H29 SING N N 60 M9B C21 H30 SING N N 61 M9B C22 H31 SING N N 62 M9B C22 H32 SING N N 63 M9B C23 H33 SING N N 64 M9B C23 H34 SING N N 65 M9B C24 H35 SING N N 66 M9B C24 H36 SING N N 67 M9B C25 H37 SING N N 68 M9B C26 H38 SING N N 69 M9B C26 H39 SING N N 70 M9B C26 H40 SING N N 71 M9B C27 H41 SING N N 72 M9B C27 H42 SING N N 73 M9B C27 H43 SING N N 74 M9B O1 H44 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M9B InChI InChI 1.03 "InChI=1S/C27H44O2/c1-18(2)8-6-9-19(3)24-13-14-25-21(10-7-15-27(24,25)5)11-12-22-16-23(28)17-26(29)20(22)4/h11-12,18-19,23-26,28-29H,4,6-10,13-17H2,1-3,5H3/b21-11+,22-12-/t19-,23-,24-,25+,26+,27-/m1/s1" M9B InChIKey InChI 1.03 OFHCOWSQAMBJIW-AVJTYSNKSA-N M9B SMILES_CANONICAL CACTVS 3.385 "CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C" M9B SMILES CACTVS 3.385 "CC(C)CCC[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C" M9B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCCC(C)C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C" M9B SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CCCC(C)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C" # _pdbx_chem_comp_identifier.comp_id M9B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methylheptan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M9B "Create component" 2019-10-08 EBI M9B "Initial release" 2020-10-14 RCSB ##