data_MA6 # _chem_comp.id MA6 _chem_comp.name "6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.274 _chem_comp.one_letter_code A _chem_comp.three_letter_code MA6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1WTS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MA6 C2 C2 C 0 1 Y N N N N N 15.501 11.355 2.515 4.607 -1.372 -0.930 C2 MA6 1 MA6 C4 C4 C 0 1 Y N N N N N 16.583 12.568 1.043 2.599 -0.447 -0.301 C4 MA6 2 MA6 C5 C5 C 0 1 Y N N N N N 17.496 13.017 1.984 3.281 0.684 0.176 C5 MA6 3 MA6 P P P 0 1 N N N N N N 19.859 14.290 -4.633 -5.132 1.291 -0.093 P MA6 4 MA6 OP1 O1P O 0 1 N N N N N N 20.887 15.031 -5.411 -6.265 0.430 0.314 OP1 MA6 5 MA6 OP2 O2P O 0 1 N N N N N N 19.177 13.155 -5.299 -5.570 2.193 -1.353 OP2 MA6 6 MA6 OP3 O3P O 0 1 N Y N N N N 20.608 13.756 -3.299 -4.717 2.248 1.133 OP3 MA6 7 MA6 "O5'" "O5'" O 0 1 N N N N N N 18.777 15.347 -4.042 -3.878 0.369 -0.503 "O5'" MA6 8 MA6 "C5'" "C5'" C 0 1 N N N N N N 17.365 15.156 -3.766 -3.322 -0.620 0.365 "C5'" MA6 9 MA6 "C4'" "C4'" C 0 1 N N R N N N 16.765 13.752 -3.593 -2.148 -1.310 -0.332 "C4'" MA6 10 MA6 "O4'" "O4'" O 0 1 N N N N N N 17.332 13.026 -2.462 -1.074 -0.374 -0.524 "O4'" MA6 11 MA6 "C1'" "C1'" C 0 1 N N R N N N 16.334 12.900 -1.446 0.159 -1.113 -0.391 "C1'" MA6 12 MA6 N9 N9 N 0 1 Y N N N N N 16.959 13.139 -0.147 1.268 -0.214 -0.065 N9 MA6 13 MA6 N3 N3 N 0 1 Y N N N N N 15.551 11.731 1.243 3.296 -1.442 -0.841 N3 MA6 14 MA6 N1 N1 N 0 1 Y N N N N N 16.309 11.695 3.523 5.292 -0.329 -0.495 N1 MA6 15 MA6 C6 C6 C 0 1 Y N N N N N 17.349 12.535 3.307 4.681 0.713 0.059 C6 MA6 16 MA6 N6 N6 N 0 1 N N N N N N 18.143 12.828 4.361 5.408 1.801 0.511 N6 MA6 17 MA6 C9 C9 C 0 1 N N N N N N 19.299 13.722 4.220 6.846 1.605 0.284 C9 MA6 18 MA6 C10 C10 C 0 1 N N N N N N 17.966 12.248 5.704 4.940 3.044 -0.117 C10 MA6 19 MA6 N7 N7 N 0 1 Y N N N N N 18.411 13.885 1.389 2.349 1.534 0.669 N7 MA6 20 MA6 C8 C8 C 0 1 Y N N N N N 18.040 13.932 0.129 1.166 1.009 0.529 C8 MA6 21 MA6 "C2'" "C2'" C 0 1 N N R N N N 15.212 13.860 -1.831 -0.124 -2.080 0.787 "C2'" MA6 22 MA6 "O2'" "O2'" O 0 1 N N N N N N 14.001 13.534 -1.152 0.709 -3.239 0.707 "O2'" MA6 23 MA6 "C3'" "C3'" C 0 1 N N S N N N 15.247 13.604 -3.353 -1.609 -2.451 0.553 "C3'" MA6 24 MA6 "O3'" "O3'" O 0 1 N N N N N N 14.907 12.285 -3.860 -1.711 -3.703 -0.128 "O3'" MA6 25 MA6 H2 H2 H 0 1 N N N N N N 14.696 10.681 2.770 5.144 -2.199 -1.370 H2 MA6 26 MA6 HOP2 HOP2 H 0 0 N N N N N N 19.514 13.056 -6.182 -6.322 2.776 -1.177 HOP2 MA6 27 MA6 "H5'" "H5'" H 0 1 N N N N N N 17.154 15.701 -2.834 -2.971 -0.144 1.281 "H5'" MA6 28 MA6 "H5''" "H5''" H 0 0 N N N N N N 16.820 15.627 -4.597 -4.085 -1.359 0.610 "H5''" MA6 29 MA6 "H4'" "H4'" H 0 1 N N N N N N 17.000 13.188 -4.508 -2.470 -1.706 -1.296 "H4'" MA6 30 MA6 "H1'" "H1'" H 0 1 N N N N N N 15.927 11.878 -1.462 0.372 -1.669 -1.304 "H1'" MA6 31 MA6 H91 H91 H 0 1 N N N N N N 19.804 13.825 5.192 7.031 1.480 -0.783 H91 MA6 32 MA6 H92 H92 H 0 1 N N N N N N 20.000 13.301 3.485 7.393 2.475 0.648 H92 MA6 33 MA6 H93 H93 H 0 1 N N N N N N 18.958 14.710 3.878 7.180 0.716 0.818 H93 MA6 34 MA6 H101 H101 H 0 0 N N N N N N 18.737 12.646 6.380 3.888 3.200 0.125 H101 MA6 35 MA6 H102 H102 H 0 0 N N N N N N 16.970 12.512 6.089 5.527 3.883 0.255 H102 MA6 36 MA6 H103 H103 H 0 0 N N N N N N 18.059 11.153 5.646 5.056 2.970 -1.198 H103 MA6 37 MA6 H8 H8 H 0 1 N N N N N N 18.538 14.536 -0.615 0.241 1.474 0.836 H8 MA6 38 MA6 "H2'" "H2'" H 0 1 N N N N N N 15.520 14.896 -1.624 0.005 -1.575 1.744 "H2'" MA6 39 MA6 "HO2'" "HO2'" H 0 0 N N N N N N 13.320 14.145 -1.408 0.569 -3.874 1.423 "HO2'" MA6 40 MA6 "H3'" "H3'" H 0 1 N N N N N N 14.699 14.395 -3.885 -2.148 -2.485 1.500 "H3'" MA6 41 MA6 "HO3'" "HO3'" H 0 0 N Y N N N N 13.977 12.130 -3.741 -1.386 -4.456 0.384 "HO3'" MA6 42 MA6 HOP3 H1 H 0 1 N Y N N N N 21.517 14.031 -3.314 -3.978 2.841 0.937 H1 MA6 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MA6 C2 N3 DOUB Y N 1 MA6 C2 N1 SING Y N 2 MA6 C2 H2 SING N N 3 MA6 C4 C5 DOUB Y N 4 MA6 C4 N9 SING Y N 5 MA6 C4 N3 SING Y N 6 MA6 C5 C6 SING Y N 7 MA6 C5 N7 SING Y N 8 MA6 P OP1 DOUB N N 9 MA6 P OP2 SING N N 10 MA6 P OP3 SING N N 11 MA6 P "O5'" SING N N 12 MA6 OP2 HOP2 SING N N 13 MA6 "O5'" "C5'" SING N N 14 MA6 "C5'" "C4'" SING N N 15 MA6 "C5'" "H5'" SING N N 16 MA6 "C5'" "H5''" SING N N 17 MA6 "C4'" "O4'" SING N N 18 MA6 "C4'" "C3'" SING N N 19 MA6 "C4'" "H4'" SING N N 20 MA6 "O4'" "C1'" SING N N 21 MA6 "C1'" N9 SING N N 22 MA6 "C1'" "C2'" SING N N 23 MA6 "C1'" "H1'" SING N N 24 MA6 N9 C8 SING Y N 25 MA6 N1 C6 DOUB Y N 26 MA6 C6 N6 SING N N 27 MA6 N6 C9 SING N N 28 MA6 N6 C10 SING N N 29 MA6 C9 H91 SING N N 30 MA6 C9 H92 SING N N 31 MA6 C9 H93 SING N N 32 MA6 C10 H101 SING N N 33 MA6 C10 H102 SING N N 34 MA6 C10 H103 SING N N 35 MA6 N7 C8 DOUB Y N 36 MA6 C8 H8 SING N N 37 MA6 "C2'" "O2'" SING N N 38 MA6 "C2'" "C3'" SING N N 39 MA6 "C2'" "H2'" SING N N 40 MA6 "O2'" "HO2'" SING N N 41 MA6 "C3'" "O3'" SING N N 42 MA6 "C3'" "H3'" SING N N 43 MA6 "O3'" "HO3'" SING N N 44 MA6 OP3 HOP3 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MA6 SMILES ACDLabs 12.01 "CN(C)c1ncnc2c1ncn2C1OC(COP(=O)(O)O)C(O)C1O" MA6 InChI InChI 1.06 "InChI=1S/C12H18N5O7P/c1-16(2)10-7-11(14-4-13-10)17(5-15-7)12-9(19)8(18)6(24-12)3-23-25(20,21)22/h4-6,8-9,12,18-19H,3H2,1-2H3,(H2,20,21,22)/t6-,8-,9-,12-/m1/s1" MA6 InChIKey InChI 1.06 OWRDTHWSVNWFAZ-WOUKDFQISA-N MA6 SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" MA6 SMILES CACTVS 3.385 "CN(C)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" MA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" MA6 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MA6 "SYSTEMATIC NAME" ACDLabs 12.01 ;N,N-dimethyladenosine 5'-(dihydrogen phosphate) ; MA6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MA6 "Create component" 1999-07-08 RCSB MA6 "Modify descriptor" 2011-06-04 RCSB MA6 "Modify atom id" 2024-03-27 RCSB #