data_MA7 # _chem_comp.id MA7 _chem_comp.name "1N-METHYLADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H17 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-01-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.256 _chem_comp.one_letter_code A _chem_comp.three_letter_code MA7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MA7 C2 C2 C 0 1 Y N N 61.080 27.298 37.937 2.195 4.084 2.766 C2 MA7 1 MA7 C4 C4 C 0 1 Y N N 63.124 27.082 38.726 1.885 2.955 0.847 C4 MA7 2 MA7 C5 C5 C 0 1 Y N N 62.714 27.369 40.016 1.531 4.082 0.128 C5 MA7 3 MA7 C6 C6 C 0 1 Y N N 61.347 27.627 40.210 1.528 5.268 0.838 C6 MA7 4 MA7 C8 C8 C 0 1 Y N N 64.810 27.038 40.125 1.432 2.463 -1.250 C8 MA7 5 MA7 P P P 0 1 N N N 68.882 26.350 40.931 1.592 -1.245 -4.964 P MA7 6 MA7 OP1 O1P O 0 1 N N N 68.409 27.541 41.678 2.575 -0.951 -6.059 OP1 MA7 7 MA7 OP2 O2P O 0 1 N N N 69.390 25.176 41.673 0.339 -0.227 -4.868 OP2 MA7 8 MA7 "O5'" O5* O 0 1 N N N 67.770 25.891 39.890 2.211 -1.232 -3.468 "O5'" MA7 9 MA7 N9 N9 N 0 1 Y N N 64.479 26.853 38.806 1.818 1.923 -0.049 N9 MA7 10 MA7 N3 N3 N 0 1 Y N N 62.346 27.031 37.627 2.222 2.891 2.142 N3 MA7 11 MA7 N1 N1 N 1 1 Y N N 60.544 27.582 39.128 1.862 5.269 2.166 N1 MA7 12 MA7 N6 N6 N 0 1 N N N 60.806 27.918 41.396 1.184 6.482 0.218 N6 MA7 13 MA7 N7 N7 N 0 1 Y N N 63.791 27.342 40.890 1.251 3.766 -1.175 N7 MA7 14 MA7 CN CN C 0 1 N N N 59.088 27.853 39.266 1.872 6.497 2.952 CN MA7 15 MA7 "C2'" C2* C 0 1 N N N 66.615 27.345 37.584 0.878 -0.312 0.578 "C2'" MA7 16 MA7 "C5'" C5* C 0 1 N N N 68.008 24.818 38.983 1.348 -1.500 -2.377 "C5'" MA7 17 MA7 "C4'" C4* C 0 1 N N R 67.258 25.060 37.695 2.156 -1.432 -1.088 "C4'" MA7 18 MA7 "O4'" O4* O 0 1 N N N 65.847 25.160 37.994 2.678 -0.093 -0.958 "O4'" MA7 19 MA7 "C1'" C1* C 0 1 N N R 65.374 26.470 37.715 2.101 0.516 0.211 "C1'" MA7 20 MA7 "C3'" C3* C 0 1 N N S 67.630 26.372 37.010 1.309 -1.697 0.152 "C3'" MA7 21 MA7 "O3'" O3* O 0 1 N N N 67.435 26.251 35.594 2.127 -2.250 1.180 "O3'" MA7 22 MA7 OP3 O3P O 0 1 N Y N ? ? ? 0.886 -2.697 -5.051 OP3 MA7 23 MA7 H2 H2 H 0 1 N N N 60.387 27.283 37.109 2.453 4.118 3.817 H2 MA7 24 MA7 H8 H8 H 0 1 N N N 65.819 26.942 40.498 1.300 1.859 -2.137 H8 MA7 25 MA7 HOP2 2HOP H 0 0 N N N 70.321 25.280 41.832 -0.163 -0.014 -5.684 HOP2 MA7 26 MA7 H61 1H6 H 0 1 N N N 59.838 28.108 41.562 1.532 6.681 -0.700 H61 MA7 27 MA7 H62 2H6 H 0 1 N N N 61.525 27.915 42.091 0.676 7.172 0.737 H62 MA7 28 MA7 HN1 1HN H 0 1 N N N 58.742 28.445 38.406 2.317 6.289 3.928 HN1 MA7 29 MA7 HN2 2HN H 0 1 N N N 58.906 28.414 40.194 2.454 7.271 2.443 HN2 MA7 30 MA7 HN3 3HN H 0 1 N N N 58.539 26.901 39.300 0.848 6.859 3.083 HN3 MA7 31 MA7 "H2'" 1H2* H 0 1 N N N 66.932 27.803 38.532 0.008 0.008 -0.009 "H2'" MA7 32 MA7 "H2''" 2H2* H 0 0 N N N 66.445 28.204 36.919 0.635 -0.225 1.641 "H2''" MA7 33 MA7 "H5'" 1H5* H 0 1 N N N 67.660 23.877 39.434 0.551 -0.756 -2.359 "H5'" MA7 34 MA7 "H5''" 2H5* H 0 0 N N N 69.085 24.752 38.771 0.917 -2.495 -2.497 "H5''" MA7 35 MA7 "H4'" H4* H 0 1 N N N 67.515 24.223 37.029 3.008 -2.117 -1.157 "H4'" MA7 36 MA7 "H1'" H1* H 0 1 N N N 64.793 26.564 36.785 2.853 0.503 1.007 "H1'" MA7 37 MA7 "H3'" H3* H 0 1 N N N 68.675 26.675 37.170 0.475 -2.383 -0.018 "H3'" MA7 38 MA7 "HO3'" H3T H 0 0 N Y N 66.505 26.224 35.403 2.928 -1.706 1.218 "HO3'" MA7 39 MA7 HOP3 3HOP H 0 0 N N N 0.303 -0.763 -0.478 0.508 -2.990 -5.907 HOP3 MA7 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MA7 C2 N3 DOUB Y N 1 MA7 C2 N1 SING Y N 2 MA7 C2 H2 SING N N 3 MA7 C4 C5 DOUB Y N 4 MA7 C4 N9 SING Y N 5 MA7 C4 N3 SING Y N 6 MA7 C5 C6 SING Y N 7 MA7 C5 N7 SING Y N 8 MA7 C6 N1 DOUB Y N 9 MA7 C6 N6 SING N N 10 MA7 C8 N9 SING Y N 11 MA7 C8 N7 DOUB Y N 12 MA7 C8 H8 SING N N 13 MA7 P OP1 DOUB N N 14 MA7 P OP2 SING N N 15 MA7 P "O5'" SING N N 16 MA7 P OP3 SING N N 17 MA7 OP2 HOP2 SING N N 18 MA7 "O5'" "C5'" SING N N 19 MA7 N9 "C1'" SING N N 20 MA7 N1 CN SING N N 21 MA7 N6 H61 SING N N 22 MA7 N6 H62 SING N N 23 MA7 CN HN1 SING N N 24 MA7 CN HN2 SING N N 25 MA7 CN HN3 SING N N 26 MA7 "C2'" "C1'" SING N N 27 MA7 "C2'" "C3'" SING N N 28 MA7 "C2'" "H2'" SING N N 29 MA7 "C2'" "H2''" SING N N 30 MA7 "C5'" "C4'" SING N N 31 MA7 "C5'" "H5'" SING N N 32 MA7 "C5'" "H5''" SING N N 33 MA7 "C4'" "O4'" SING N N 34 MA7 "C4'" "C3'" SING N N 35 MA7 "C4'" "H4'" SING N N 36 MA7 "O4'" "C1'" SING N N 37 MA7 "C1'" "H1'" SING N N 38 MA7 "C3'" "O3'" SING N N 39 MA7 "C3'" "H3'" SING N N 40 MA7 "O3'" "HO3'" SING N N 41 MA7 OP3 HOP3 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MA7 SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c(N)[n+](cnc12)C)CC3O" MA7 SMILES_CANONICAL CACTVS 3.341 "C[n+]1cnc2n(cnc2c1N)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" MA7 SMILES CACTVS 3.341 "C[n+]1cnc2n(cnc2c1N)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" MA7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[n+]1cnc2c(c1N)ncn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" MA7 SMILES "OpenEye OEToolkits" 1.5.0 "C[n+]1cnc2c(c1N)ncn2C3CC(C(O3)COP(=O)(O)O)O" MA7 InChI InChI 1.03 "InChI=1S/C11H16N5O6P/c1-15-4-14-11-9(10(15)12)13-5-16(11)8-2-6(17)7(22-8)3-21-23(18,19)20/h4-8,12,17H,2-3H2,1H3,(H2,18,19,20)/p+1/t6-,7+,8+/m0/s1" MA7 InChIKey InChI 1.03 ZADFQQACHTYMIF-XLPZGREQSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MA7 "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-1-methyladenosine 5'-(dihydrogen phosphate) ; MA7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-amino-1-methyl-purin-1-ium-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MA7 "Create component" 2006-01-30 RCSB MA7 "Modify descriptor" 2011-06-04 RCSB #