data_MCL # _chem_comp.id MCL _chem_comp.name "NZ-(1-CARBOXYETHYL)-LYSINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H16 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-09-23 _chem_comp.pdbx_modified_date 2018-05-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by KPI _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 216.234 _chem_comp.one_letter_code K _chem_comp.three_letter_code MCL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MCL N N N 0 1 N N N -5.976 11.587 23.288 3.860 1.478 0.842 N MCL 1 MCL CA CA C 0 1 N N S -4.591 11.730 23.672 3.586 0.075 0.504 CA MCL 2 MCL CB CB C 0 1 N N N -3.777 12.183 22.464 2.281 -0.013 -0.289 CB MCL 3 MCL CG CG C 0 1 N N N -2.325 12.550 22.818 1.114 0.424 0.599 CG MCL 4 MCL CD CD C 0 1 N N N -1.514 12.921 21.566 -0.191 0.336 -0.194 CD MCL 5 MCL CE CE C 0 1 N N N -0.073 13.302 21.952 -1.358 0.773 0.694 CE MCL 6 MCL NZ NZ N 0 1 N N N 0.470 13.978 20.770 -2.608 0.689 -0.065 NZ MCL 7 MCL CX1 CX1 C 0 1 N N N 1.649 14.294 20.479 -3.512 -0.150 0.280 CX1 MCL 8 MCL C1 C1 C 0 1 N N N 2.758 13.891 21.412 -3.235 -1.146 1.377 C1 MCL 9 MCL CX2 CX2 C 0 1 N N N 1.922 15.052 19.237 -4.830 -0.141 -0.398 CX2 MCL 10 MCL O1 O1 O 0 1 N N N 0.979 15.305 18.436 -5.077 0.749 -1.378 O1 MCL 11 MCL O2 O2 O 0 1 N N N 3.105 15.464 19.038 -5.687 -0.936 -0.070 O2 MCL 12 MCL C C C 0 1 N N N -4.575 12.780 24.792 4.718 -0.471 -0.329 C MCL 13 MCL O O O 0 1 N N N -4.857 13.971 24.563 5.458 0.285 -0.912 O MCL 14 MCL OXT OXT O 0 1 N Y N ? ? ? 4.903 -1.797 -0.422 OXT MCL 15 MCL H HN1 H 0 1 N N N -6.512 11.290 24.078 4.683 1.557 1.421 H MCL 16 MCL H2 HN2 H 0 1 N Y N -6.323 12.466 22.961 3.949 2.040 0.008 H2 MCL 17 MCL HA HA H 0 1 N N N -4.190 10.779 24.053 3.495 -0.508 1.420 HA MCL 18 MCL HB2 HB1 H 0 1 N N N -3.762 11.367 21.726 2.340 0.640 -1.160 HB2 MCL 19 MCL HB3 HB2 H 0 1 N N N -4.264 13.066 22.025 2.123 -1.041 -0.616 HB3 MCL 20 MCL HG2 HG1 H 0 1 N N N -2.331 13.408 23.506 1.055 -0.229 1.469 HG2 MCL 21 MCL HG3 HG2 H 0 1 N N N -1.849 11.689 23.310 1.272 1.452 0.926 HG3 MCL 22 MCL HD2 HD1 H 0 1 N N N -1.490 12.060 20.882 -0.133 0.989 -1.065 HD2 MCL 23 MCL HD3 HD2 H 0 1 N N N -1.992 13.775 21.064 -0.349 -0.692 -0.521 HD3 MCL 24 MCL HE2 HE1 H 0 1 N N N -0.071 13.979 22.819 -1.417 0.120 1.564 HE2 MCL 25 MCL HE3 HE2 H 0 1 N N N 0.515 12.403 22.187 -1.200 1.801 1.021 HE3 MCL 26 MCL H11 H11 H 0 1 N N N 3.720 14.243 21.012 -3.441 -0.687 2.345 H11 MCL 27 MCL H12 H12 H 0 1 N N N 2.586 14.340 22.401 -3.875 -2.018 1.245 H12 MCL 28 MCL H13 H13 H 0 1 N N N 2.779 12.795 21.505 -2.190 -1.452 1.335 H13 MCL 29 MCL HO1 HO1 H 0 1 N N N 1.309 15.825 17.712 -5.951 0.716 -1.791 HO1 MCL 30 MCL HXT HXT H 0 1 N Y N ? ? ? 5.642 -2.100 -0.967 HXT MCL 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MCL N CA SING N N 1 MCL N H SING N N 2 MCL N H2 SING N N 3 MCL CA CB SING N N 4 MCL CA C SING N N 5 MCL CA HA SING N N 6 MCL CB CG SING N N 7 MCL CB HB2 SING N N 8 MCL CB HB3 SING N N 9 MCL CG CD SING N N 10 MCL CG HG2 SING N N 11 MCL CG HG3 SING N N 12 MCL CD CE SING N N 13 MCL CD HD2 SING N N 14 MCL CD HD3 SING N N 15 MCL CE NZ SING N N 16 MCL CE HE2 SING N N 17 MCL CE HE3 SING N N 18 MCL NZ CX1 DOUB N N 19 MCL CX1 C1 SING N N 20 MCL CX1 CX2 SING N N 21 MCL C1 H11 SING N N 22 MCL C1 H12 SING N N 23 MCL C1 H13 SING N N 24 MCL CX2 O1 SING N N 25 MCL CX2 O2 DOUB N N 26 MCL O1 HO1 SING N N 27 MCL C O DOUB N N 28 MCL C OXT SING N N 29 MCL OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MCL SMILES ACDLabs 12.01 "NC(CCCC\N=C(/C)C(O)=O)C(=O)O" MCL InChI InChI 1.03 "InChI=1S/C9H16N2O4/c1-6(8(12)13)11-5-3-2-4-7(10)9(14)15/h7H,2-5,10H2,1H3,(H,12,13)(H,14,15)/b11-6+/t7-/m0/s1" MCL InChIKey InChI 1.03 JXBWDTJQFXOTMZ-KEXZDQNZSA-N MCL SMILES_CANONICAL CACTVS 3.385 "CC(=NCCCC[C@H](N)C(O)=O)C(O)=O" MCL SMILES CACTVS 3.385 "CC(=NCCCC[CH](N)C(O)=O)C(O)=O" MCL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C(=N\CCCC[C@@H](C(=O)O)N)/C(=O)O" MCL SMILES "OpenEye OEToolkits" 1.7.6 "CC(=NCCCCC(C(=O)O)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MCL "SYSTEMATIC NAME" ACDLabs 12.01 "(E)-N~6~-(1-carboxyethylidene)-L-lysine" MCL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[(E)-(1-oxidanyl-1-oxidanylidene-propan-2-ylidene)amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MCL "Create component" 2003-09-23 RCSB MCL "Modify descriptor" 2011-06-04 RCSB MCL "Modify formula" 2015-10-26 RCSB MCL "Modify value order" 2015-10-26 RCSB MCL "Other modification" 2016-04-18 RCSB MCL "Obsolete component" 2018-05-29 RCSB #