data_MFL # _chem_comp.id MFL _chem_comp.name "tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H37 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "tert-butyl (1-((S)-3-cyclopropyl-1-(((S)-4-(methylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate; MG-100 inhibitor (covalently bound to protein)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-27 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MFL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AIV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MFL N1 N1 N 0 1 N N N 30.680 -28.748 24.669 4.426 -1.153 0.173 N1 MFL 1 MFL N3 N2 N 0 1 N N N 28.808 -26.212 29.930 -2.476 -0.014 -0.480 N3 MFL 2 MFL C4 C1 C 0 1 N N N 29.945 -26.921 20.525 5.891 2.454 1.609 C4 MFL 3 MFL C5 C2 C 0 1 N N N 31.401 -28.115 23.724 4.679 0.164 0.307 C5 MFL 4 MFL C6 C3 C 0 1 N N N 31.074 -28.954 26.000 3.137 -1.648 0.412 C6 MFL 5 MFL C7 C4 C 0 1 N N N 30.191 -28.574 27.010 2.040 -1.180 -0.343 C7 MFL 6 MFL C8 C5 C 0 1 N N N 31.846 -29.360 28.598 0.598 -2.599 0.858 C8 MFL 7 MFL C10 C6 C 0 1 N N N 32.326 -29.509 26.286 2.927 -2.595 1.377 C10 MFL 8 MFL C13 C7 C 0 1 N N N 29.939 -29.185 30.755 -0.975 -2.338 -1.640 C13 MFL 9 MFL C15 C8 C 0 1 N N N 28.335 -31.242 30.716 -0.484 -4.003 -3.597 C15 MFL 10 MFL C17 C9 C 0 1 N N S 28.866 -24.831 30.365 -3.461 0.600 0.413 C17 MFL 11 MFL C20 C10 C 0 1 N N S 28.220 -24.102 28.048 -2.948 2.892 -0.439 C20 MFL 12 MFL C21 C11 C 0 1 N N N 29.536 -23.457 27.631 -2.426 3.376 0.933 C21 MFL 13 MFL C22 C12 C 0 1 N N N 29.135 -22.272 26.788 -2.160 4.873 0.659 C22 MFL 14 MFL C24 C13 C 0 1 N N N 29.011 -23.563 32.558 -4.003 -1.628 1.358 C24 MFL 15 MFL C1 C14 C 0 1 N N N 31.896 -26.029 21.772 5.072 2.848 -0.718 C1 MFL 16 MFL C2 C15 C 0 1 N N N 31.132 -27.284 21.397 6.085 2.085 0.137 C2 MFL 17 MFL C3 C16 C 0 1 N N N 32.024 -28.306 20.717 7.504 2.456 -0.299 C3 MFL 18 MFL O1 O1 O 0 1 N N N 30.638 -27.961 22.624 5.885 0.657 -0.034 O1 MFL 19 MFL O2 O2 O 0 1 N N N 32.538 -27.746 23.878 3.818 0.906 0.736 O2 MFL 20 MFL N2 N3 N 0 1 N N N 30.607 -28.839 28.330 0.805 -1.662 -0.105 N2 MFL 21 MFL C9 C17 C 0 1 N N N 32.699 -29.706 27.612 1.627 -3.074 1.596 C9 MFL 22 MFL O3 O3 O 0 1 N N N 29.098 -28.065 26.823 2.211 -0.338 -1.210 O3 MFL 23 MFL C11 C18 C 0 1 N N S 29.731 -28.419 29.443 -0.328 -1.170 -0.893 C11 MFL 24 MFL C12 C19 C 0 1 N N N 29.896 -26.918 29.641 -1.342 -0.539 0.026 C12 MFL 25 MFL C14 C20 C 0 1 N N N 29.713 -30.667 30.618 0.015 -2.900 -2.662 C14 MFL 26 MFL C16 C21 C 0 1 N N N 29.324 -31.483 31.809 0.491 -4.341 -2.467 C16 MFL 27 MFL O4 O4 O 0 1 N N N 30.991 -26.396 29.476 -1.138 -0.503 1.221 O4 MFL 28 MFL C18 C22 C 0 1 N N R 28.621 -24.842 31.870 -4.582 -0.401 0.701 C18 MFL 29 MFL C19 C23 C 0 1 N N N 27.901 -23.987 29.535 -4.049 1.845 -0.254 C19 MFL 30 MFL N4 N4 N 0 1 N N N 27.820 -22.664 26.295 -3.055 5.233 -0.447 N4 MFL 31 MFL C23 C24 C 0 1 N N N 27.202 -23.512 27.085 -3.507 4.139 -1.088 C23 MFL 32 MFL O5 O5 O 0 1 N N N 25.998 -23.812 27.011 -4.255 4.153 -2.042 O5 MFL 33 MFL O6 O6 O 0 1 N N N 29.313 -25.905 32.468 -5.216 -0.772 -0.525 O6 MFL 34 MFL N5 N5 N 0 1 N N N 29.986 -23.657 33.449 -3.443 -1.536 2.581 N5 MFL 35 MFL C25 C25 C 0 1 N N N 30.553 -22.516 34.148 -2.880 -2.728 3.220 C25 MFL 36 MFL O7 O7 O 0 1 N N N 28.361 -22.556 32.289 -4.042 -2.697 0.787 O7 MFL 37 MFL H1 H1 H 0 1 N N N 29.785 -29.102 24.398 5.136 -1.758 -0.094 H1 MFL 38 MFL H2 H2 H 0 1 N N N 27.914 -26.651 29.844 -2.638 -0.043 -1.436 H2 MFL 39 MFL H3 H3 H 0 1 N N N 29.320 -26.180 21.045 4.880 2.190 1.920 H3 MFL 40 MFL H4 H4 H 0 1 N N N 30.304 -26.496 19.576 6.613 1.910 2.219 H4 MFL 41 MFL H5 H5 H 0 1 N N N 29.350 -27.824 20.321 6.042 3.526 1.738 H5 MFL 42 MFL H6 H6 H 0 1 N N N 32.147 -29.497 29.626 -0.400 -2.973 1.032 H6 MFL 43 MFL H7 H7 H 0 1 N N N 32.997 -29.782 25.485 3.753 -2.971 1.963 H7 MFL 44 MFL H8 H8 H 0 1 N N N 30.971 -29.019 31.097 -1.245 -3.119 -0.929 H8 MFL 45 MFL H9 H9 H 0 1 N N N 29.236 -28.792 31.505 -1.870 -1.989 -2.155 H9 MFL 46 MFL H10 H10 H 0 1 N N N 27.474 -30.580 30.890 -1.518 -4.329 -3.484 H10 MFL 47 MFL H11 H11 H 0 1 N N N 28.035 -32.068 30.054 -0.097 -4.014 -4.616 H11 MFL 48 MFL H12 H12 H 0 1 N N N 29.882 -24.447 30.192 -2.978 0.883 1.348 H12 MFL 49 MFL H13 H13 H 0 1 N N N 28.299 -25.175 27.817 -2.132 2.485 -1.036 H13 MFL 50 MFL H14 H14 H 0 1 N N N 30.144 -24.162 27.045 -3.184 3.250 1.706 H14 MFL 51 MFL H15 H15 H 0 1 N N N 30.104 -23.130 28.514 -1.506 2.859 1.205 H15 MFL 52 MFL H16 H16 H 0 1 N N N 29.841 -22.118 25.958 -2.394 5.466 1.543 H16 MFL 53 MFL H17 H17 H 0 1 N N N 29.075 -21.356 27.394 -1.120 5.024 0.369 H17 MFL 54 MFL H18 H18 H 0 1 N N N 32.755 -26.297 22.404 5.223 3.920 -0.590 H18 MFL 55 MFL H19 H19 H 0 1 N N N 32.254 -25.531 20.859 5.211 2.585 -1.767 H19 MFL 56 MFL H20 H20 H 0 1 N N N 31.233 -25.348 22.325 4.062 2.583 -0.407 H20 MFL 57 MFL H21 H21 H 0 1 N N N 32.873 -28.547 21.374 8.226 1.912 0.311 H21 MFL 58 MFL H22 H22 H 0 1 N N N 31.446 -29.220 20.514 7.642 2.193 -1.347 H22 MFL 59 MFL H23 H23 H 0 1 N N N 32.399 -27.892 19.770 7.655 3.528 -0.170 H23 MFL 60 MFL H24 H24 H 0 1 N N N 33.663 -30.132 27.850 1.448 -3.821 2.354 H24 MFL 61 MFL H25 H25 H 0 1 N N N 28.690 -28.592 29.132 0.023 -0.429 -1.611 H25 MFL 62 MFL H26 H26 H 0 1 N N N 30.379 -31.173 29.904 0.731 -2.184 -3.066 H26 MFL 63 MFL H27 H27 H 0 1 N N N 29.752 -32.486 31.952 0.098 -4.889 -1.611 H27 MFL 64 MFL H28 H28 H 0 1 N N N 29.191 -30.999 32.788 1.519 -4.574 -2.743 H28 MFL 65 MFL H29 H29 H 0 1 N N N 27.542 -24.987 32.025 -5.315 0.056 1.365 H29 MFL 66 MFL H30 H30 H 0 1 N N N 27.988 -22.934 29.842 -4.461 1.576 -1.227 H30 MFL 67 MFL H31 H31 H 0 1 N N N 26.873 -24.337 29.711 -4.839 2.256 0.374 H31 MFL 68 MFL H32 H32 H 0 1 N N N 27.428 -22.322 25.441 -3.289 6.144 -0.687 H32 MFL 69 MFL H33 H33 H 0 1 N N N 29.153 -25.901 33.404 -4.621 -1.186 -1.166 H33 MFL 70 MFL H34 H34 H 0 1 N N N 30.353 -24.565 33.652 -3.412 -0.681 3.037 H34 MFL 71 MFL H35 H35 H 0 1 N N N 31.344 -22.860 34.831 -2.085 -3.134 2.595 H35 MFL 72 MFL H36 H36 H 0 1 N N N 30.979 -21.813 33.417 -2.475 -2.461 4.196 H36 MFL 73 MFL H37 H37 H 0 1 N N N 29.765 -22.011 34.725 -3.663 -3.477 3.344 H37 MFL 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MFL C4 C2 SING N N 1 MFL C3 C2 SING N N 2 MFL C2 C1 SING N N 3 MFL C2 O1 SING N N 4 MFL O1 C5 SING N N 5 MFL C5 O2 DOUB N N 6 MFL C5 N1 SING N N 7 MFL N1 C6 SING N N 8 MFL C6 C10 DOUB N N 9 MFL C6 C7 SING N N 10 MFL C10 C9 SING N N 11 MFL N4 C22 SING N N 12 MFL N4 C23 SING N N 13 MFL C22 C21 SING N N 14 MFL O3 C7 DOUB N N 15 MFL C7 N2 SING N N 16 MFL O5 C23 DOUB N N 17 MFL C23 C20 SING N N 18 MFL C9 C8 DOUB N N 19 MFL C21 C20 SING N N 20 MFL C20 C19 SING N N 21 MFL N2 C8 SING N N 22 MFL N2 C11 SING N N 23 MFL C11 C12 SING N N 24 MFL C11 C13 SING N N 25 MFL O4 C12 DOUB N N 26 MFL C19 C17 SING N N 27 MFL C12 N3 SING N N 28 MFL N3 C17 SING N N 29 MFL C17 C18 SING N N 30 MFL C14 C15 SING N N 31 MFL C14 C13 SING N N 32 MFL C14 C16 SING N N 33 MFL C15 C16 SING N N 34 MFL C18 O6 SING N N 35 MFL C18 C24 SING N N 36 MFL O7 C24 DOUB N N 37 MFL C24 N5 SING N N 38 MFL N5 C25 SING N N 39 MFL N1 H1 SING N N 40 MFL N3 H2 SING N N 41 MFL C4 H3 SING N N 42 MFL C4 H4 SING N N 43 MFL C4 H5 SING N N 44 MFL C8 H6 SING N N 45 MFL C10 H7 SING N N 46 MFL C13 H8 SING N N 47 MFL C13 H9 SING N N 48 MFL C15 H10 SING N N 49 MFL C15 H11 SING N N 50 MFL C17 H12 SING N N 51 MFL C20 H13 SING N N 52 MFL C21 H14 SING N N 53 MFL C21 H15 SING N N 54 MFL C22 H16 SING N N 55 MFL C22 H17 SING N N 56 MFL C1 H18 SING N N 57 MFL C1 H19 SING N N 58 MFL C1 H20 SING N N 59 MFL C3 H21 SING N N 60 MFL C3 H22 SING N N 61 MFL C3 H23 SING N N 62 MFL C9 H24 SING N N 63 MFL C11 H25 SING N N 64 MFL C14 H26 SING N N 65 MFL C16 H27 SING N N 66 MFL C16 H28 SING N N 67 MFL C18 H29 SING N N 68 MFL C19 H30 SING N N 69 MFL C19 H31 SING N N 70 MFL N4 H32 SING N N 71 MFL O6 H33 SING N N 72 MFL N5 H34 SING N N 73 MFL C25 H35 SING N N 74 MFL C25 H36 SING N N 75 MFL C25 H37 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MFL InChI InChI 1.06 "InChI=1S/C25H37N5O7/c1-25(2,3)37-24(36)29-16-6-5-11-30(23(16)35)18(12-14-7-8-14)21(33)28-17(19(31)22(34)26-4)13-15-9-10-27-20(15)32/h5-6,11,14-15,17-19,31H,7-10,12-13H2,1-4H3,(H,26,34)(H,27,32)(H,28,33)(H,29,36)/t15-,17-,18-,19+/m0/s1" MFL InChIKey InChI 1.06 GYAZATSRBWQIIG-DSLXNQLJSA-N MFL SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)OC(C)(C)C)C3=O" MFL SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)OC(C)(C)C)C3=O" MFL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)NC)O" MFL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NC)O" # _pdbx_chem_comp_identifier.comp_id MFL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-[[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 MFL "tert-butyl (1-((S)-3-cyclopropyl-1-(((S)-4-(methylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate" AUTHOR ? 2 MFL "MG-100 inhibitor (covalently bound to protein)" AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MFL "Create component" 2022-07-27 PDBE MFL "Modify synonyms" 2022-08-14 PDBE MFL "Initial release" 2023-08-16 RCSB MFL "Modify descriptor" 2023-09-23 RCSB #