data_MUB # _chem_comp.id MUB _chem_comp.name "N-acetyl-alpha-muramic acid" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H19 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-acetyl-muramic acid; N-ACETYLMURAMIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-03-16 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.270 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MUB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 MUB "N-acetyl-muramic acid" PDB ? 2 MUB "N-ACETYLMURAMIC ACID" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MUB C1 C1 C 0 1 N N S -0.744 9.346 -2.817 1.370 2.611 1.828 C1 MUB 1 MUB C2 C2 C 0 1 N N R -0.305 10.579 -3.591 1.297 1.601 0.676 C2 MUB 2 MUB C3 C3 C 0 1 N N R -0.257 10.290 -5.081 0.157 0.600 0.905 C3 MUB 3 MUB C4 C4 C 0 1 N N S 0.439 8.944 -5.283 -1.154 1.294 1.291 C4 MUB 4 MUB C5 C5 C 0 1 N N R -0.371 7.833 -4.636 -0.979 2.416 2.329 C5 MUB 5 MUB C6 C6 C 0 1 N N N 0.516 6.858 -3.884 -0.872 1.912 3.767 C6 MUB 6 MUB C7 C7 C 0 1 N N N -2.258 11.901 -4.031 1.679 1.779 -1.778 C7 MUB 7 MUB C8 C8 C 0 1 N N N -3.084 13.120 -3.691 1.401 2.630 -2.973 C8 MUB 8 MUB C9 C9 C 0 1 N N R 1.631 11.693 -4.967 -0.056 -1.583 1.745 C9 MUB 9 MUB C10 C10 C 0 1 N N N 2.932 10.928 -5.153 0.888 -2.408 0.896 C10 MUB 10 MUB C11 C11 C 0 1 N N N 1.694 13.023 -4.221 -0.272 -2.220 3.106 C11 MUB 11 MUB O1 O1 O 0 1 N Y N -1.711 9.690 -1.887 2.406 3.552 1.554 O1 MUB 12 MUB O3 O3 O 0 1 N N N 0.469 11.347 -5.743 0.523 -0.304 1.947 O3 MUB 13 MUB O4 O4 O 0 1 N N N 0.651 8.619 -6.670 -1.709 1.864 0.102 O4 MUB 14 MUB O5 O5 O 0 1 N N N -1.322 8.373 -3.693 0.119 3.275 1.999 O5 MUB 15 MUB O6 O6 O 0 1 N N N -0.222 6.098 -2.935 -2.062 1.217 4.089 O6 MUB 16 MUB O7 O7 O 0 1 N N N -2.763 10.998 -4.697 2.329 0.748 -1.909 O7 MUB 17 MUB O11 O11 O 0 1 N N N 3.086 9.857 -4.396 0.394 -3.645 0.631 O11 MUB 18 MUB O10 O10 O 0 1 N N N 3.844 11.436 -5.804 1.983 -2.029 0.500 O10 MUB 19 MUB N2 N2 N 0 1 N N N -1.164 11.712 -3.327 1.148 2.270 -0.600 N2 MUB 20 MUB H1 H1 H 0 1 N N N 0.134 8.959 -2.289 1.640 2.111 2.764 H1 MUB 21 MUB H2 H2 H 0 1 N N N 0.683 10.860 -3.196 2.256 1.073 0.614 H2 MUB 22 MUB HN2 HN2 H 0 1 N N N -0.796 12.463 -2.812 0.627 3.142 -0.630 HN2 MUB 23 MUB H81 H81 H 0 1 N N N -3.920 13.186 -4.361 2.323 2.982 -3.463 H81 MUB 24 MUB H82 H82 H 0 1 N N N -2.454 13.993 -3.787 0.844 2.089 -3.754 H82 MUB 25 MUB H83 H83 H 0 1 N N N -3.431 13.035 -2.675 0.812 3.541 -2.776 H83 MUB 26 MUB H3 H3 H 0 1 N N N -1.271 10.215 -5.557 0.008 -0.001 0.000 H3 MUB 27 MUB H9 H9 H 0 1 N N N 1.140 10.966 -4.250 -1.004 -1.446 1.214 H9 MUB 28 MUB H111 H111 H 0 0 N N N 1.329 13.821 -4.870 0.300 -3.150 3.198 H111 MUB 29 MUB H112 H112 H 0 0 N N N 2.698 13.222 -3.966 -1.327 -2.480 3.245 H112 MUB 30 MUB H113 H113 H 0 0 N N N 1.104 12.949 -3.310 0.032 -1.554 3.920 H113 MUB 31 MUB H4 H4A H 0 1 N N N 1.417 9.225 -4.828 -1.881 0.562 1.662 H4 MUB 32 MUB H5 H5 H 0 1 N N N -0.901 7.247 -5.403 -1.866 3.059 2.290 H5 MUB 33 MUB H61 H61 H 0 1 N N N 1.390 7.316 -3.397 -0.750 2.754 4.447 H61 MUB 34 MUB H62 H62 H 0 1 N N N 0.937 6.230 -4.710 -0.023 1.235 3.861 H62 MUB 35 MUB HO6 HO6 H 0 1 N Y N -0.679 6.623 -2.264 -2.491 1.705 4.813 HO6 MUB 36 MUB HO4 H4 H 0 1 N Y N 1.084 7.782 -6.795 -1.965 1.121 -0.466 HO4 MUB 37 MUB HO11 "H1'" H 0 0 N N N 3.899 9.379 -4.512 0.979 -4.221 0.095 HO11 MUB 38 MUB HO1 HO1 H 0 1 N Y N -1.985 8.920 -1.403 3.054 3.094 0.997 HO1 MUB 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MUB C1 C2 SING N N 1 MUB C2 C3 SING N N 2 MUB C3 C4 SING N N 3 MUB C4 C5 SING N N 4 MUB C5 C6 SING N N 5 MUB C7 C8 SING N N 6 MUB C9 C10 SING N N 7 MUB C9 C11 SING N N 8 MUB C1 O1 SING N N 9 MUB C3 O3 SING N N 10 MUB C9 O3 SING N N 11 MUB C4 O4 SING N N 12 MUB C1 O5 SING N N 13 MUB C5 O5 SING N N 14 MUB C6 O6 SING N N 15 MUB C7 O7 DOUB N N 16 MUB C10 O11 SING N N 17 MUB C10 O10 DOUB N N 18 MUB C2 N2 SING N N 19 MUB C7 N2 SING N N 20 MUB C1 H1 SING N N 21 MUB C2 H2 SING N N 22 MUB N2 HN2 SING N N 23 MUB C8 H81 SING N N 24 MUB C8 H82 SING N N 25 MUB C8 H83 SING N N 26 MUB C3 H3 SING N N 27 MUB C9 H9 SING N N 28 MUB C11 H111 SING N N 29 MUB C11 H112 SING N N 30 MUB C11 H113 SING N N 31 MUB C4 H4 SING N N 32 MUB C5 H5 SING N N 33 MUB C6 H61 SING N N 34 MUB C6 H62 SING N N 35 MUB O6 HO6 SING N N 36 MUB O4 HO4 SING N N 37 MUB O11 HO11 SING N N 38 MUB O1 HO1 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MUB SMILES ACDLabs 10.04 "O=C(O)C(OC1C(O)C(OC(O)C1NC(=O)C)CO)C" MUB SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@H](O)[C@@H]1NC(C)=O)C(O)=O" MUB SMILES CACTVS 3.341 "C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(O)=O" MUB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C" MUB SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(=O)O)OC1C(C(OC(C1O)CO)O)NC(=O)C" MUB InChI InChI 1.03 "InChI=1S/C11H19NO8/c1-4(10(16)17)19-9-7(12-5(2)14)11(18)20-6(3-13)8(9)15/h4,6-9,11,13,15,18H,3H2,1-2H3,(H,12,14)(H,16,17)/t4-,6-,7-,8-,9-,11+/m1/s1" MUB InChIKey InChI 1.03 MNLRQHMNZILYPY-MDMHTWEWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MUB "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-alpha-D-glucopyranose" MUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-2,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxypropanoic acid" MUB "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpNAc3 MUB "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 MurNAc # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support MUB "CARBOHYDRATE ISOMER" D PDB ? MUB "CARBOHYDRATE RING" pyranose PDB ? MUB "CARBOHYDRATE ANOMER" alpha PDB ? MUB "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MUB "Create component" 2004-03-16 RCSB MUB "Modify descriptor" 2011-06-04 RCSB MUB "Modify leaving atom flag" 2014-03-31 EBI MUB "Other modification" 2019-08-12 RCSB MUB "Other modification" 2019-12-19 RCSB MUB "Other modification" 2020-07-03 RCSB MUB "Modify name" 2020-07-17 RCSB MUB "Modify synonyms" 2020-07-17 RCSB MUB "Modify atom id" 2020-07-17 RCSB MUB "Modify component atom id" 2020-07-17 RCSB ##