data_N0K # _chem_comp.id N0K _chem_comp.name "5-[ethyl(methyl)amino]-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-04 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N0K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TBH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N0K C4 C1 C 0 1 N N S 63.548 28.246 33.611 7.005 -0.233 -0.714 C4 N0K 1 N0K C5 C2 C 0 1 N N R 63.041 28.793 34.984 8.202 -0.448 0.229 C5 N0K 2 N0K O4 O1 O 0 1 N N N 72.090 32.528 32.613 -4.996 -2.807 -1.434 O4 N0K 3 N0K C6 C3 C 0 1 N N S 61.803 27.965 35.293 9.062 0.830 0.149 C6 N0K 4 N0K C7 C4 C 0 1 Y N N 74.506 31.663 32.420 -4.784 -1.222 0.562 C7 N0K 5 N0K C8 C5 C 0 1 N N N 64.050 29.010 36.053 7.709 -0.660 1.662 C8 N0K 6 N0K C15 C6 C 0 1 N N N 65.994 28.150 33.579 4.629 -0.683 -0.822 C15 N0K 7 N0K S1 S1 S 0 1 N N N 73.050 31.643 33.119 -4.107 -2.569 -0.352 S1 N0K 8 N0K O2 O2 O 0 1 N N N 73.182 32.047 34.565 -3.757 -3.564 0.600 O2 N0K 9 N0K N21 N1 N 0 1 N N N 72.519 30.146 32.836 -2.686 -2.042 -1.020 N21 N0K 10 N0K C20 C7 C 0 1 N N N 71.216 29.934 33.485 -1.569 -1.654 -0.156 C20 N0K 11 N0K C19 C8 C 0 1 N N N 70.402 29.076 32.549 -0.281 -1.601 -0.980 C19 N0K 12 N0K C18 C9 C 0 1 N N N 69.782 27.854 33.298 0.886 -1.196 -0.077 C18 N0K 13 N0K C17 C10 C 0 1 N N N 68.419 28.207 33.692 2.174 -1.142 -0.901 C17 N0K 14 N0K C16 C11 C 0 1 N N N 67.221 27.256 33.520 3.341 -0.737 0.002 C16 N0K 15 N0K N7 N2 N 0 1 N N N 64.722 27.357 33.663 5.749 -0.295 0.045 N7 N0K 16 N0K C3 C12 C 0 1 N N N 62.354 27.399 33.109 7.179 1.169 -1.334 C3 N0K 17 N0K O9 O3 O 0 1 N N N 63.437 29.685 37.164 8.818 -0.974 2.506 O9 N0K 18 N0K O10 O4 O 0 1 N N N 62.256 26.683 35.693 8.720 1.729 1.206 O10 N0K 19 N0K C2 C13 C 0 1 N N R 61.177 27.829 33.941 8.699 1.446 -1.225 C2 N0K 20 N0K O11 O5 O 0 1 N N N 60.075 26.936 33.893 8.960 2.851 -1.234 O11 N0K 21 N0K H1 H1 H 0 1 N N N 63.724 29.086 32.922 7.005 -0.991 -1.497 H1 N0K 22 N0K H2 H2 H 0 1 N N N 62.654 29.796 34.750 8.783 -1.311 -0.097 H2 N0K 23 N0K H3 H3 H 0 1 N N N 61.141 28.456 36.022 10.122 0.580 0.190 H3 N0K 24 N0K H7 H7 H 0 1 N N N 64.444 28.039 36.387 7.227 0.251 2.018 H7 N0K 25 N0K H8 H8 H 0 1 N N N 64.873 29.625 35.660 6.993 -1.481 1.682 H8 N0K 26 N0K H9 H9 H 0 1 N N N 66.068 28.797 34.466 4.826 -1.665 -1.252 H9 N0K 27 N0K H10 H10 H 0 1 N N N 65.965 28.773 32.673 4.518 0.048 -1.622 H10 N0K 28 N0K H11 H11 H 0 1 N N N 72.422 30.012 31.850 -2.594 -1.990 -1.985 H11 N0K 29 N0K H12 H12 H 0 1 N N N 70.713 30.898 33.650 -1.766 -0.672 0.274 H12 N0K 30 N0K H13 H13 H 0 1 N N N 71.351 29.421 34.449 -1.458 -2.386 0.645 H13 N0K 31 N0K H14 H14 H 0 1 N N N 71.052 28.709 31.741 -0.084 -2.582 -1.410 H14 N0K 32 N0K H15 H15 H 0 1 N N N 69.591 29.683 32.120 -0.392 -0.869 -1.780 H15 N0K 33 N0K H16 H16 H 0 1 N N N 69.763 26.979 32.632 0.689 -0.214 0.353 H16 N0K 34 N0K H17 H17 H 0 1 N N N 70.380 27.622 34.191 0.997 -1.927 0.724 H17 N0K 35 N0K H20 H20 H 0 1 N N N 67.197 26.514 34.332 3.452 -1.469 0.802 H20 N0K 36 N0K H21 H21 H 0 1 N N N 67.275 26.738 32.551 3.143 0.245 0.432 H21 N0K 37 N0K H22 H22 H 0 1 N N N 64.683 26.717 32.896 5.562 0.583 0.506 H22 N0K 38 N0K H24 H24 H 0 1 N N N 62.164 27.596 32.044 6.866 1.166 -2.378 H24 N0K 39 N0K H25 H25 H 0 1 N N N 62.556 26.327 33.253 6.615 1.910 -0.767 H25 N0K 40 N0K H26 H26 H 0 1 N N N 64.083 29.823 37.847 8.579 -1.121 3.431 H26 N0K 41 N0K H27 H27 H 0 1 N N N 62.659 26.743 36.551 9.231 2.550 1.204 H27 N0K 42 N0K H28 H28 H 0 1 N N N 60.858 28.826 33.602 9.242 0.946 -2.028 H28 N0K 43 N0K H29 H29 H 0 1 N N N 59.373 27.270 34.439 8.676 3.299 -2.043 H29 N0K 44 N0K C1 C14 C 0 1 Y N N ? ? ? -5.187 -0.051 -0.102 C1 N0K 45 N0K C9 C15 C 0 1 Y N N ? ? ? -5.729 1.021 0.650 C9 N0K 46 N0K C10 C16 C 0 1 Y N N ? ? ? -5.853 0.892 2.042 C10 N0K 47 N0K C11 C17 C 0 1 Y N N ? ? ? -5.452 -0.257 2.652 C11 N0K 48 N0K C12 C18 C 0 1 Y N N ? ? ? -4.924 -1.314 1.912 C12 N0K 49 N0K C13 C19 C 0 1 Y N N ? ? ? -6.134 2.198 -0.016 C13 N0K 50 N0K C14 C20 C 0 1 Y N N ? ? ? -5.994 2.282 -1.385 C14 N0K 51 N0K C21 C21 C 0 1 Y N N ? ? ? -5.460 1.223 -2.113 C21 N0K 52 N0K C22 C22 C 0 1 Y N N ? ? ? -5.061 0.077 -1.496 C22 N0K 53 N0K N1 N3 N 0 1 N N N ? ? ? -6.670 3.263 0.703 N1 N0K 54 N0K C24 C24 C 0 1 N N N ? ? ? -5.857 4.475 0.533 C24 N0K 55 N0K C25 C25 C 0 1 N N N ? ? ? -8.067 3.508 0.319 C25 N0K 56 N0K H4 H4 H 0 1 N N N ? ? ? -4.614 -2.215 2.420 H4 N0K 57 N0K H5 H5 H 0 1 N N N ? ? ? -5.548 -0.353 3.723 H5 N0K 58 N0K H6 H6 H 0 1 N N N ? ? ? -6.264 1.702 2.627 H6 N0K 59 N0K H31 H31 H 0 1 N N N ? ? ? -4.649 -0.735 -2.077 H31 N0K 60 N0K H32 H32 H 0 1 N N N ? ? ? -5.360 1.312 -3.184 H32 N0K 61 N0K H33 H33 H 0 1 N N N ? ? ? -6.303 3.181 -1.898 H33 N0K 62 N0K H23 H23 H 0 1 N N N ? ? ? -8.660 2.616 0.521 H23 N0K 63 N0K H30 H30 H 0 1 N N N ? ? ? -8.461 4.345 0.896 H30 N0K 64 N0K H34 H34 H 0 1 N N N ? ? ? -8.116 3.744 -0.744 H34 N0K 65 N0K H35 H35 H 0 1 N N N ? ? ? -5.826 4.746 -0.523 H35 N0K 66 N0K H36 H36 H 0 1 N N N ? ? ? -6.298 5.292 1.104 H36 N0K 67 N0K H18 H18 H 0 1 N N N 68.466 28.443 34.765 2.371 -2.124 -1.331 H18 N0K 68 N0K H19 H19 H 0 1 N N N 68.167 29.117 33.127 2.063 -0.410 -1.701 H19 N0K 69 N0K H37 H37 H 0 1 N N N ? ? ? -4.845 4.287 0.890 H37 N0K 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N0K C7 S1 SING N N 1 N0K C19 C18 SING N N 2 N0K C19 C20 SING N N 3 N0K O4 S1 DOUB N N 4 N0K N21 S1 SING N N 5 N0K N21 C20 SING N N 6 N0K C3 C4 SING N N 7 N0K C3 C2 SING N N 8 N0K S1 O2 DOUB N N 9 N0K C18 C17 SING N N 10 N0K C16 C15 SING N N 11 N0K C16 C17 SING N N 12 N0K C15 N7 SING N N 13 N0K C4 N7 SING N N 14 N0K C4 C5 SING N N 15 N0K O11 C2 SING N N 16 N0K C2 C6 SING N N 17 N0K C5 C6 SING N N 18 N0K C5 C8 SING N N 19 N0K C6 O10 SING N N 20 N0K C8 O9 SING N N 21 N0K C4 H1 SING N N 22 N0K C5 H2 SING N N 23 N0K C6 H3 SING N N 24 N0K C8 H7 SING N N 25 N0K C8 H8 SING N N 26 N0K C15 H9 SING N N 27 N0K C15 H10 SING N N 28 N0K N21 H11 SING N N 29 N0K C20 H12 SING N N 30 N0K C20 H13 SING N N 31 N0K C19 H14 SING N N 32 N0K C19 H15 SING N N 33 N0K C18 H16 SING N N 34 N0K C18 H17 SING N N 35 N0K C16 H20 SING N N 36 N0K C16 H21 SING N N 37 N0K N7 H22 SING N N 38 N0K C3 H24 SING N N 39 N0K C3 H25 SING N N 40 N0K O9 H26 SING N N 41 N0K O10 H27 SING N N 42 N0K C2 H28 SING N N 43 N0K O11 H29 SING N N 44 N0K C7 C1 SING Y N 45 N0K C1 C9 DOUB Y N 46 N0K C9 C10 SING Y N 47 N0K C10 C11 DOUB Y N 48 N0K C11 C12 SING Y N 49 N0K C12 C7 DOUB Y N 50 N0K C9 C13 SING Y N 51 N0K C13 C14 DOUB Y N 52 N0K C14 C21 SING Y N 53 N0K C21 C22 DOUB Y N 54 N0K C22 C1 SING Y N 55 N0K C13 N1 SING N N 56 N0K N1 C24 SING N N 57 N0K N1 C25 SING N N 58 N0K C12 H4 SING N N 59 N0K C11 H5 SING N N 60 N0K C10 H6 SING N N 61 N0K C22 H31 SING N N 62 N0K C21 H32 SING N N 63 N0K C14 H33 SING N N 64 N0K C25 H23 SING N N 65 N0K C25 H30 SING N N 66 N0K C25 H34 SING N N 67 N0K C24 H35 SING N N 68 N0K C24 H36 SING N N 69 N0K C17 H18 SING N N 70 N0K C17 H19 SING N N 71 N0K C24 H37 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N0K InChI InChI 1.03 "InChI=1S/C24H37N3O5S/c1-27(2)21-11-7-10-18-17(21)9-8-12-23(18)33(31,32)26-14-6-4-3-5-13-25-20-15-22(29)24(30)19(20)16-28/h7-12,19-20,22,24-26,28-30H,3-6,13-16H2,1-2H3/t19-,20-,22+,24-/m0/s1" N0K InChIKey InChI 1.03 YQJKLKLPVRSCCE-QRVLJTFESA-N N0K SMILES_CANONICAL CACTVS 3.385 "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[C@H]3C[C@@H](O)[C@@H](O)[C@H]3CO" N0K SMILES CACTVS 3.385 "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[CH]3C[CH](O)[CH](O)[CH]3CO" N0K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCN[C@H]3C[C@H]([C@H]([C@H]3CO)O)O" N0K SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCNC3CC(C(C3CO)O)O" # _pdbx_chem_comp_identifier.comp_id N0K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(dimethylamino)-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N0K "Create component" 2019-11-04 PDBE N0K "Initial release" 2020-08-19 RCSB ##