data_N0N # _chem_comp.id N0N _chem_comp.name "5-(dimethylamino)-~{N}-[6-[[(1~{R},2~{R},3~{S},4~{S},5~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-04 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N0N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TBG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N0N C4 C1 C 0 1 N N R 12.731 20.678 83.504 -6.834 -0.228 0.639 C4 N0N 1 N0N C5 C2 C 0 1 N N R 12.379 19.369 84.262 -8.028 -0.465 -0.309 C5 N0N 2 N0N O4 O1 O 0 1 N N N 23.435 22.828 87.295 3.933 -3.596 -0.535 O4 N0N 3 N0N C6 C3 C 0 1 N N S 11.272 18.757 83.425 -8.488 0.961 -0.703 C6 N0N 4 N0N C7 C4 C 0 1 Y N N 22.489 20.599 87.937 4.962 -1.255 -0.541 C7 N0N 5 N0N C8 C5 C 0 1 N N N 13.504 18.367 84.557 -7.583 -1.246 -1.547 C8 N0N 6 N0N C9 C6 C 0 1 Y N N 23.646 19.707 87.616 5.363 -0.070 0.098 C9 N0N 7 N0N C10 C7 C 0 1 Y N N 23.775 18.418 88.352 5.916 0.982 -0.673 C10 N0N 8 N0N C11 C8 C 0 1 Y N N 22.837 18.058 89.307 6.054 0.821 -2.060 C11 N0N 9 N0N C12 C9 C 0 1 Y N N 21.789 18.913 89.588 5.654 -0.342 -2.647 C12 N0N 10 N0N C13 C10 C 0 1 Y N N 21.621 20.144 88.920 5.110 -1.377 -1.889 C13 N0N 11 N0N C14 C11 C 0 1 Y N N 24.912 17.517 88.026 6.319 2.173 -0.031 C14 N0N 12 N0N C15 C12 C 0 1 N N N 15.150 21.067 83.550 -4.459 -0.678 0.771 C15 N0N 13 N0N C2 C13 C 0 1 N N S 10.466 20.001 83.074 -8.307 1.755 0.614 C2 N0N 14 N0N C3 C14 C 0 1 N N S 11.559 20.911 82.540 -7.011 1.183 1.225 C3 N0N 15 N0N N7 N1 N 0 1 N N N 14.007 20.625 82.736 -5.573 -0.308 -0.111 N7 N0N 16 N0N O9 O2 O 0 1 N N N 12.981 17.271 85.378 -8.723 -1.554 -2.351 O9 N0N 17 N0N O10 O3 O 0 1 N N N 11.836 18.208 82.185 -7.658 1.492 -1.738 O10 N0N 18 N0N O11 O4 O 0 1 N N N 9.408 19.725 82.157 -8.161 3.150 0.340 O11 N0N 19 N0N O12 O5 O 0 1 N N N 11.080 22.248 82.416 -7.132 1.111 2.648 O12 N0N 20 N0N C16 C15 C 0 1 N N N 16.487 20.860 82.843 -3.166 -0.751 -0.043 C16 N0N 21 N0N C17 C16 C 0 1 N N N 17.617 21.310 83.775 -2.005 -1.137 0.876 C17 N0N 22 N0N C18 C17 C 0 1 N N N 18.933 20.621 83.484 -0.712 -1.210 0.061 C18 N0N 23 N0N C19 C18 C 0 1 N N N 20.160 21.428 83.911 0.449 -1.595 0.980 C19 N0N 24 N0N C20 C19 C 0 1 N N N 20.434 21.435 85.425 1.742 -1.668 0.165 C20 N0N 25 N0N N21 N2 N 0 1 N N N 21.831 21.867 85.661 2.853 -2.037 1.045 N21 N0N 26 N0N S1 S1 S 0 1 N N N 22.220 22.031 87.223 4.278 -2.580 0.397 S1 N0N 27 N0N O2 O6 O 0 1 N N N 21.186 22.701 87.933 5.160 -2.795 1.490 O2 N0N 28 N0N C21 C20 C 0 1 Y N N 25.818 17.928 87.047 6.166 2.290 1.334 C21 N0N 29 N0N C22 C21 C 0 1 Y N N 25.662 19.145 86.378 5.621 1.249 2.082 C22 N0N 30 N0N C23 C22 C 0 1 Y N N 24.598 20.018 86.646 5.224 0.091 1.488 C23 N0N 31 N0N N24 N3 N 0 1 N N N 25.072 16.285 88.692 6.866 3.220 -0.769 N24 N0N 32 N0N C25 C23 C 0 1 N N N 25.333 15.074 87.925 6.007 4.410 -0.711 C25 N0N 33 N0N C26 C24 C 0 1 N N N 24.999 16.209 90.140 8.228 3.530 -0.313 C26 N0N 34 N0N H1 H1 H 0 1 N N N 12.770 21.506 84.227 -6.840 -0.969 1.439 H1 N0N 35 N0N H2 H2 H 0 1 N N N 11.941 19.662 85.227 -8.827 -0.996 0.209 H2 N0N 36 N0N H3 H3 H 0 1 N N N 10.679 18.023 83.990 -9.534 0.957 -1.012 H3 N0N 37 N0N H4 H4 H 0 1 N N N 13.892 17.963 83.610 -6.883 -0.642 -2.125 H4 N0N 38 N0N H5 H5 H 0 1 N N N 14.315 18.876 85.099 -7.096 -2.171 -1.237 H5 N0N 39 N0N H6 H6 H 0 1 N N N 22.925 17.116 89.828 6.474 1.615 -2.660 H6 N0N 40 N0N H7 H7 H 0 1 N N N 21.073 18.629 90.345 5.761 -0.463 -3.715 H7 N0N 41 N0N H8 H8 H 0 1 N N N 20.776 20.762 89.186 4.802 -2.289 -2.378 H8 N0N 42 N0N H9 H9 H 0 1 N N N 15.031 22.138 83.773 -4.352 0.071 1.556 H9 N0N 43 N0N H10 H10 H 0 1 N N N 15.156 20.495 84.490 -4.659 -1.650 1.222 H10 N0N 44 N0N H11 H11 H 0 1 N N N 10.062 20.435 84.000 -9.151 1.585 1.281 H11 N0N 45 N0N H12 H12 H 0 1 N N N 11.858 20.539 81.549 -6.162 1.810 0.954 H12 N0N 46 N0N H13 H13 H 0 1 N N N 14.167 19.684 82.437 -5.652 -0.952 -0.883 H13 N0N 47 N0N H15 H15 H 0 1 N N N 13.677 16.651 85.560 -8.515 -2.049 -3.155 H15 N0N 48 N0N H16 H16 H 0 1 N N N 12.343 17.430 82.385 -7.905 2.383 -2.021 H16 N0N 49 N0N H17 H17 H 0 1 N N N 8.772 19.153 82.570 -8.044 3.695 1.130 H17 N0N 50 N0N H18 H18 H 0 1 N N N 11.774 22.804 82.081 -7.267 1.967 3.075 H18 N0N 51 N0N H19 H19 H 0 1 N N N 16.613 19.795 82.597 -3.273 -1.500 -0.828 H19 N0N 52 N0N H20 H20 H 0 1 N N N 16.512 21.456 81.919 -2.965 0.221 -0.494 H20 N0N 53 N0N H21 H21 H 0 1 N N N 17.756 22.395 83.659 -1.898 -0.387 1.660 H21 N0N 54 N0N H22 H22 H 0 1 N N N 17.326 21.087 84.812 -2.206 -2.109 1.327 H22 N0N 55 N0N H23 H23 H 0 1 N N N 18.947 19.660 84.019 -0.819 -1.959 -0.723 H23 N0N 56 N0N H24 H24 H 0 1 N N N 18.997 20.439 82.401 -0.511 -0.238 -0.390 H24 N0N 57 N0N H25 H25 H 0 1 N N N 21.041 21.004 83.406 0.556 -0.846 1.764 H25 N0N 58 N0N H26 H26 H 0 1 N N N 20.015 22.469 83.585 0.248 -2.567 1.431 H26 N0N 59 N0N H27 H27 H 0 1 N N N 19.744 22.133 85.921 1.635 -2.417 -0.619 H27 N0N 60 N0N H28 H28 H 0 1 N N N 20.287 20.423 85.831 1.943 -0.696 -0.286 H28 N0N 61 N0N H29 H29 H 0 1 N N N 22.442 21.187 85.255 2.755 -1.963 2.007 H29 N0N 62 N0N H30 H30 H 0 1 N N N 26.656 17.293 86.802 6.473 3.199 1.830 H30 N0N 63 N0N H31 H31 H 0 1 N N N 26.387 19.423 85.628 5.511 1.364 3.150 H31 N0N 64 N0N H32 H32 H 0 1 N N N 24.515 20.943 86.094 4.803 -0.705 2.084 H32 N0N 65 N0N H33 H33 H 0 1 N N N 25.428 14.219 88.610 5.901 4.731 0.325 H33 N0N 66 N0N H34 H34 H 0 1 N N N 24.501 14.895 87.228 6.458 5.212 -1.296 H34 N0N 67 N0N H35 H35 H 0 1 N N N 26.267 15.194 87.357 5.026 4.170 -1.119 H35 N0N 68 N0N H36 H36 H 0 1 N N N 24.797 17.209 90.550 8.860 2.650 -0.432 H36 N0N 69 N0N H37 H37 H 0 1 N N N 24.190 15.523 90.431 8.631 4.351 -0.906 H37 N0N 70 N0N H38 H38 H 0 1 N N N 25.955 15.837 90.536 8.202 3.819 0.738 H38 N0N 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N0N O11 C2 SING N N 1 N0N O10 C6 SING N N 2 N0N O12 C3 SING N N 3 N0N C3 C2 SING N N 4 N0N C3 C4 SING N N 5 N0N N7 C4 SING N N 6 N0N N7 C15 SING N N 7 N0N C16 C15 SING N N 8 N0N C16 C17 SING N N 9 N0N C2 C6 SING N N 10 N0N C6 C5 SING N N 11 N0N C18 C17 SING N N 12 N0N C18 C19 SING N N 13 N0N C4 C5 SING N N 14 N0N C19 C20 SING N N 15 N0N C5 C8 SING N N 16 N0N C8 O9 SING N N 17 N0N C20 N21 SING N N 18 N0N N21 S1 SING N N 19 N0N C22 C23 DOUB Y N 20 N0N C22 C21 SING Y N 21 N0N C23 C9 SING Y N 22 N0N C21 C14 DOUB Y N 23 N0N S1 O4 DOUB N N 24 N0N S1 O2 DOUB N N 25 N0N S1 C7 SING N N 26 N0N C9 C7 DOUB Y N 27 N0N C9 C10 SING Y N 28 N0N C25 N24 SING N N 29 N0N C7 C13 SING Y N 30 N0N C14 C10 SING Y N 31 N0N C14 N24 SING N N 32 N0N C10 C11 DOUB Y N 33 N0N N24 C26 SING N N 34 N0N C13 C12 DOUB Y N 35 N0N C11 C12 SING Y N 36 N0N C4 H1 SING N N 37 N0N C5 H2 SING N N 38 N0N C6 H3 SING N N 39 N0N C8 H4 SING N N 40 N0N C8 H5 SING N N 41 N0N C11 H6 SING N N 42 N0N C12 H7 SING N N 43 N0N C13 H8 SING N N 44 N0N C15 H9 SING N N 45 N0N C15 H10 SING N N 46 N0N C2 H11 SING N N 47 N0N C3 H12 SING N N 48 N0N N7 H13 SING N N 49 N0N O9 H15 SING N N 50 N0N O10 H16 SING N N 51 N0N O11 H17 SING N N 52 N0N O12 H18 SING N N 53 N0N C16 H19 SING N N 54 N0N C16 H20 SING N N 55 N0N C17 H21 SING N N 56 N0N C17 H22 SING N N 57 N0N C18 H23 SING N N 58 N0N C18 H24 SING N N 59 N0N C19 H25 SING N N 60 N0N C19 H26 SING N N 61 N0N C20 H27 SING N N 62 N0N C20 H28 SING N N 63 N0N N21 H29 SING N N 64 N0N C21 H30 SING N N 65 N0N C22 H31 SING N N 66 N0N C23 H32 SING N N 67 N0N C25 H33 SING N N 68 N0N C25 H34 SING N N 69 N0N C25 H35 SING N N 70 N0N C26 H36 SING N N 71 N0N C26 H37 SING N N 72 N0N C26 H38 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N0N InChI InChI 1.03 "InChI=1S/C24H37N3O6S/c1-27(2)19-11-7-10-17-16(19)9-8-12-20(17)34(32,33)26-14-6-4-3-5-13-25-21-18(15-28)22(29)24(31)23(21)30/h7-12,18,21-26,28-31H,3-6,13-15H2,1-2H3/t18-,21+,22-,23-,24-/m0/s1" N0N InChIKey InChI 1.03 UQDXIILZCYJPNV-GXWFBMCDSA-N N0N SMILES_CANONICAL CACTVS 3.385 "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[C@H]3[C@H](O)[C@@H](O)[C@@H](O)[C@H]3CO" N0N SMILES CACTVS 3.385 "CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[CH]3[CH](O)[CH](O)[CH](O)[CH]3CO" N0N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCN[C@@H]3[C@@H]([C@@H]([C@@H]([C@H]3O)O)O)CO" N0N SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCNC3C(C(C(C3O)O)O)CO" # _pdbx_chem_comp_identifier.comp_id N0N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(dimethylamino)-~{N}-[6-[[(1~{R},2~{R},3~{S},4~{S},5~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N0N "Create component" 2019-11-04 PDBE N0N "Initial release" 2020-08-19 RCSB ##