data_N2G # _chem_comp.id N2G _chem_comp.name ;2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate) ; _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C21 H22 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.402 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N2G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2V4T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N2G P P P 0 1 N N N 6.421 -14.965 -14.372 -7.350 -0.853 -0.651 P N2G 1 N2G O1P O1P O 0 1 N N N 5.511 -16.110 -14.602 -7.749 -0.540 -2.179 O1P N2G 2 N2G O2P O2P O 0 1 N N N 5.877 -13.596 -14.502 -7.832 0.244 0.219 O2P N2G 3 N2G O3P O3P O 0 1 N Y N ? ? ? -8.028 -2.239 -0.192 O3P N2G 4 N2G "O5'" "O5'" O 0 1 N N N 7.745 -15.098 -15.264 -5.749 -0.971 -0.528 "O5'" N2G 5 N2G CAZ CAZ C 0 1 Y N N 17.863 -17.172 -11.706 5.804 -1.189 -0.049 CAZ N2G 6 N2G CAK CAK C 0 1 Y N N 16.812 -16.742 -12.499 5.510 -0.840 1.280 CAK N2G 7 N2G CAF CAF C 0 1 Y N N 16.934 -15.596 -13.285 6.451 -1.016 2.247 CAF N2G 8 N2G CAE CAE C 0 1 Y N N 18.119 -14.877 -13.273 7.707 -1.538 1.939 CAE N2G 9 N2G CAI CAI C 0 1 Y N N 19.181 -15.303 -12.479 8.027 -1.886 0.663 CAI N2G 10 N2G CAY CAY C 0 1 Y N N 19.052 -16.450 -11.698 7.081 -1.719 -0.362 CAY N2G 11 N2G CAJ CAJ C 0 1 Y N N 20.121 -16.868 -10.911 7.375 -2.068 -1.691 CAJ N2G 12 N2G CAG CAG C 0 1 Y N N 19.992 -18.010 -10.133 6.433 -1.892 -2.658 CAG N2G 13 N2G CAH CAH C 0 1 Y N N 18.794 -18.731 -10.143 5.178 -1.370 -2.350 CAH N2G 14 N2G CAV CAV C 0 1 Y N N 17.729 -18.324 -10.923 4.855 -1.027 -1.074 CAV N2G 15 N2G CAM CAM C 0 1 N N N 16.452 -19.168 -10.882 3.491 -0.469 -0.761 CAM N2G 16 N2G N2 N2 N 0 1 N N N 15.474 -18.491 -11.736 3.571 0.990 -0.657 N2 N2G 17 N2G C2 C2 C 0 1 N N N 14.278 -18.982 -12.074 2.444 1.721 -0.377 C2 N2G 18 N2G N1 N1 N 0 1 N N N 13.890 -20.227 -11.560 2.542 3.077 -0.285 N1 N2G 19 N2G C6 C6 C 0 1 N N N 12.654 -20.833 -11.834 1.448 3.823 -0.010 C6 N2G 20 N2G O6 O6 O 0 1 N N N 12.378 -21.920 -11.319 1.525 5.037 0.074 O6 N2G 21 N2G N3 N3 N 0 1 N N N 13.519 -18.240 -12.873 1.302 1.093 -0.210 N3 N2G 22 N2G C4 C4 C 0 1 Y N N 12.335 -18.843 -13.128 0.177 1.765 0.065 C4 N2G 23 N2G C5 C5 C 0 1 Y N N 11.867 -20.064 -12.671 0.213 3.160 0.178 C5 N2G 24 N2G N7 N7 N 0 1 Y N N 10.646 -20.293 -13.162 -1.047 3.573 0.458 N7 N2G 25 N2G C8 C8 C 0 1 Y N N 10.391 -19.215 -13.902 -1.834 2.539 0.528 C8 N2G 26 N2G N9 N9 N 0 1 Y N N 11.386 -18.337 -13.889 -1.123 1.400 0.285 N9 N2G 27 N2G CBE CBE C 0 1 N N R 11.421 -16.995 -14.526 -1.653 0.034 0.270 CBE N2G 28 N2G OAU OAU O 0 1 N N N 10.336 -16.197 -14.036 -3.071 0.048 -0.008 OAU N2G 29 N2G CAO CAO C 0 1 N N N 11.320 -16.938 -16.054 -1.532 -0.605 1.671 CAO N2G 30 N2G CBC CBC C 0 1 N N S 10.174 -15.951 -16.290 -2.820 -1.448 1.812 CBC N2G 31 N2G CBD CBD C 0 1 N N R 10.166 -15.150 -14.992 -3.566 -1.218 0.480 CBD N2G 32 N2G CAN CAN C 0 1 N N N 8.874 -14.357 -14.791 -5.076 -1.141 0.721 CAN N2G 33 N2G "O3'" "O3'" O 0 1 N N N 10.455 -15.077 -17.385 -2.498 -2.830 1.974 "O3'" N2G 34 N2G H1P H1P H 0 1 N N N 5.316 -16.179 -15.529 -8.701 -0.455 -2.328 H1P N2G 35 N2G H3P H3P H 0 1 N N N ? ? ? -7.758 -3.003 -0.720 H3P N2G 36 N2G HAN1 HAN1 H 0 0 N N N 8.942 -13.412 -15.350 -5.297 -0.295 1.371 HAN1 N2G 37 N2G HAN2 HAN2 H 0 0 N N N 8.743 -14.161 -13.717 -5.415 -2.063 1.194 HAN2 N2G 38 N2G HAK HAK H 0 1 N N N 15.888 -17.300 -12.509 4.541 -0.435 1.533 HAK N2G 39 N2G HAF HAF H 0 1 N N N 16.108 -15.270 -13.900 6.222 -0.747 3.267 HAF N2G 40 N2G HAE HAE H 0 1 N N N 18.219 -13.988 -13.878 8.436 -1.667 2.725 HAE N2G 41 N2G HAI HAI H 0 1 N N N 20.105 -14.744 -12.469 9.004 -2.288 0.439 HAI N2G 42 N2G HAJ HAJ H 0 1 N N N 21.044 -16.308 -10.906 8.344 -2.473 -1.944 HAJ N2G 43 N2G HAG HAG H 0 1 N N N 20.817 -18.342 -9.520 6.662 -2.160 -3.679 HAG N2G 44 N2G HAH HAH H 0 1 N N N 18.700 -19.617 -9.533 4.449 -1.240 -3.136 HAH N2G 45 N2G HAM1 HAM1 H 0 0 N N N 16.651 -20.183 -11.256 2.797 -0.739 -1.557 HAM1 N2G 46 N2G HAM2 HAM2 H 0 0 N N N 16.076 -19.266 -9.853 3.138 -0.882 0.184 HAM2 N2G 47 N2G H2 H2 H 0 1 N N N 15.720 -17.591 -12.094 4.421 1.439 -0.787 H2 N2G 48 N2G H1 H1 H 0 1 N N N 14.531 -20.711 -10.964 3.400 3.510 -0.417 H1 N2G 49 N2G H8 H8 H 0 1 N N N 9.473 -19.071 -14.453 -2.892 2.578 0.738 H8 N2G 50 N2G HBE HBE H 0 1 N N N 12.423 -16.629 -14.258 -1.128 -0.569 -0.470 HBE N2G 51 N2G HAO1 HAO1 H 0 0 N N N 12.258 -16.587 -16.510 -0.650 -1.244 1.725 HAO1 N2G 52 N2G HAO2 HAO2 H 0 0 N N N 11.140 -17.923 -16.510 -1.494 0.166 2.441 HAO2 N2G 53 N2G HBD HBD H 0 1 N N N 10.933 -14.363 -14.939 -3.334 -2.014 -0.228 HBD N2G 54 N2G HBC HBC H 0 1 N N N 9.223 -16.449 -16.532 -3.418 -1.093 2.651 HBC N2G 55 N2G "H3'" "H3'" H 0 1 N N N 10.517 -14.183 -17.069 -1.976 -3.023 2.765 "H3'" N2G 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N2G P O1P SING N N 1 N2G P O2P DOUB N N 2 N2G P O3P SING N N 3 N2G P "O5'" SING N N 4 N2G "O5'" CAN SING N N 5 N2G CAZ CAK SING Y N 6 N2G CAZ CAY DOUB Y N 7 N2G CAZ CAV SING Y N 8 N2G CAK CAF DOUB Y N 9 N2G CAF CAE SING Y N 10 N2G CAE CAI DOUB Y N 11 N2G CAI CAY SING Y N 12 N2G CAY CAJ SING Y N 13 N2G CAJ CAG DOUB Y N 14 N2G CAG CAH SING Y N 15 N2G CAH CAV DOUB Y N 16 N2G CAV CAM SING N N 17 N2G CAM N2 SING N N 18 N2G N2 C2 SING N N 19 N2G C2 N1 SING N N 20 N2G C2 N3 DOUB N N 21 N2G N1 C6 SING N N 22 N2G C6 O6 DOUB N N 23 N2G C6 C5 SING N N 24 N2G N3 C4 SING N N 25 N2G C4 C5 DOUB Y N 26 N2G C4 N9 SING Y N 27 N2G C5 N7 SING Y N 28 N2G N7 C8 DOUB Y N 29 N2G C8 N9 SING Y N 30 N2G N9 CBE SING N N 31 N2G CBE OAU SING N N 32 N2G CBE CAO SING N N 33 N2G OAU CBD SING N N 34 N2G CAO CBC SING N N 35 N2G CBC CBD SING N N 36 N2G CBC "O3'" SING N N 37 N2G CBD CAN SING N N 38 N2G O1P H1P SING N N 39 N2G CAN HAN1 SING N N 40 N2G CAN HAN2 SING N N 41 N2G CAK HAK SING N N 42 N2G CAF HAF SING N N 43 N2G CAE HAE SING N N 44 N2G CAI HAI SING N N 45 N2G CAJ HAJ SING N N 46 N2G CAG HAG SING N N 47 N2G CAH HAH SING N N 48 N2G CAM HAM1 SING N N 49 N2G CAM HAM2 SING N N 50 N2G N2 H2 SING N N 51 N2G N1 H1 SING N N 52 N2G C8 H8 SING N N 53 N2G CBE HBE SING N N 54 N2G CAO HAO1 SING N N 55 N2G CAO HAO2 SING N N 56 N2G CBD HBD SING N N 57 N2G CBC HBC SING N N 58 N2G "O3'" "H3'" SING N N 59 N2G O3P H3P SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N2G SMILES ACDLabs 10.04 "O=C3c4ncn(c4N=C(NCc2c1ccccc1ccc2)N3)C5OC(C(O)C5)COP(=O)(O)O" N2G SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4cccc5ccccc45" N2G SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4cccc5ccccc45" N2G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2CNC3=Nc4c(ncn4[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O)C(=O)N3" N2G SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2CNC3=Nc4c(ncn4C5CC(C(O5)COP(=O)(O)O)O)C(=O)N3" N2G InChI InChI 1.03 "InChI=1S/C21H22N5O7P/c27-15-8-17(33-16(15)10-32-34(29,30)31)26-11-23-18-19(26)24-21(25-20(18)28)22-9-13-6-3-5-12-4-1-2-7-14(12)13/h1-7,11,15-17,27H,8-10H2,(H2,29,30,31)(H2,22,24,25,28)/t15-,16+,17+/m0/s1" N2G InChIKey InChI 1.03 COMPKRGNHXOXMN-GVDBMIGSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N2G "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate) ; N2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[2-(naphthalen-1-ylmethylamino)-6-oxo-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N2G "Create component" 2008-09-26 EBI N2G "Modify aromatic_flag" 2011-06-04 RCSB N2G "Modify descriptor" 2011-06-04 RCSB #