data_N3U # _chem_comp.id N3U _chem_comp.name L-xylulose-5-phosphate _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-23 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code N3U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N3U C01 C1 C 0 1 N N N -7.177 -5.199 13.166 0.592 0.341 0.377 C01 N3U 1 N3U C02 C2 C 0 1 N N S -6.395 -6.041 14.236 -0.773 -0.179 -0.076 C02 N3U 2 N3U C03 C3 C 0 1 N N R -5.413 -7.065 13.544 -1.878 0.558 0.685 C03 N3U 3 N3U C04 C4 C 0 1 N N N -4.191 -6.406 12.851 -3.223 0.134 0.152 C04 N3U 4 N3U C06 C5 C 0 1 N N N -3.182 -5.524 13.623 -3.835 -1.168 0.601 C06 N3U 5 N3U O05 O1 O 0 1 N N N -4.028 -6.554 11.694 -3.810 0.838 -0.634 O05 N3U 6 N3U O07 O2 O 0 1 N N N -1.931 -5.389 13.004 -5.100 -1.344 -0.038 O07 N3U 7 N3U O08 O3 O 0 1 N N N -6.116 -7.839 12.584 -1.718 1.967 0.509 O08 N3U 8 N3U O09 O4 O 0 1 N N N -5.732 -5.240 15.206 -0.928 0.047 -1.478 O09 N3U 9 N3U O10 O5 O 0 1 N N N -6.291 -4.545 12.313 1.625 -0.426 -0.245 O10 N3U 10 N3U O12 O6 O 0 1 N N N -5.512 -3.532 10.145 3.551 -0.461 1.543 O12 N3U 11 N3U O13 O7 O 0 1 N N N -7.906 -3.671 10.588 4.062 -1.112 -0.952 O13 N3U 12 N3U O14 O8 O 0 1 N N N -6.651 -5.686 10.034 3.501 1.261 -0.301 O14 N3U 13 N3U P11 P1 P 0 1 N N N -6.595 -4.367 10.725 3.192 -0.154 0.004 P11 N3U 14 N3U H012 H1 H 0 0 N N N -7.802 -4.453 13.679 0.695 1.388 0.092 H012 N3U 15 N3U H011 H2 H 0 0 N N N -7.818 -5.870 12.576 0.675 0.250 1.460 H011 N3U 16 N3U H021 H3 H 0 0 N N N -7.149 -6.648 14.758 -0.841 -1.248 0.130 H021 N3U 17 N3U H031 H4 H 0 0 N N N -5.028 -7.729 14.332 -1.814 0.314 1.745 H031 N3U 18 N3U H061 H5 H 0 0 N N N -3.619 -4.521 13.735 -3.174 -1.992 0.332 H061 N3U 19 N3U H062 H6 H 0 0 N N N -3.027 -5.970 14.617 -3.973 -1.151 1.682 H062 N3U 20 N3U H071 H7 H 0 0 N N N -1.970 -5.752 12.127 -5.553 -2.164 0.205 H071 N3U 21 N3U H081 H8 H 0 0 N N N -5.691 -7.758 11.738 -1.764 2.256 -0.413 H081 N3U 22 N3U H091 H9 H 0 0 N N N -5.278 -5.801 15.824 -0.878 0.978 -1.734 H091 N3U 23 N3U H1 H10 H 0 1 N N N -5.078 -4.014 9.451 3.373 -1.372 1.814 H1 N3U 24 N3U H2 H11 H 0 1 N N N -8.503 -4.215 10.088 5.018 -1.002 -0.855 H2 N3U 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N3U O14 P11 DOUB N N 1 N3U O12 P11 SING N N 2 N3U O13 P11 SING N N 3 N3U P11 O10 SING N N 4 N3U O05 C04 DOUB N N 5 N3U O10 C01 SING N N 6 N3U O08 C03 SING N N 7 N3U C04 C03 SING N N 8 N3U C04 C06 SING N N 9 N3U O07 C06 SING N N 10 N3U C01 C02 SING N N 11 N3U C03 C02 SING N N 12 N3U C02 O09 SING N N 13 N3U C01 H012 SING N N 14 N3U C01 H011 SING N N 15 N3U C02 H021 SING N N 16 N3U C03 H031 SING N N 17 N3U C06 H061 SING N N 18 N3U C06 H062 SING N N 19 N3U O07 H071 SING N N 20 N3U O08 H081 SING N N 21 N3U O09 H091 SING N N 22 N3U O12 H1 SING N N 23 N3U O13 H2 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N3U SMILES ACDLabs 12.01 "O=P(O)(O)OCC(O)C(O)C(=O)CO" N3U InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5-/m0/s1" N3U InChIKey InChI 1.03 FNZLKVNUWIIPSJ-WHFBIAKZSA-N N3U SMILES_CANONICAL CACTVS 3.385 "OCC(=O)[C@H](O)[C@@H](O)CO[P](O)(O)=O" N3U SMILES CACTVS 3.385 "OCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O" N3U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]([C@H](C(=O)CO)O)O)OP(=O)(O)O" N3U SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(C(=O)CO)O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N3U "SYSTEMATIC NAME" ACDLabs 12.01 5-O-phosphono-L-xylulose N3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{R})-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N3U "Create component" 2022-03-23 RCSB N3U "Initial release" 2022-07-20 RCSB #