data_NA0 # _chem_comp.id NA0 _chem_comp.name "3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H29 N6 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2S,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-HYDROXY-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] [(2S,3S,4R,5R)-5-(3-ETHANOYLPYRIDIN-1-IUM-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL PHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-07-21 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 742.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NA0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XLT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NA0 PN PN P 0 1 N N N -14.993 181.102 12.557 -2.613 -3.206 -0.835 PN NA0 1 NA0 O1N O1N O 0 1 N N N -13.651 181.374 13.176 -3.186 -4.322 0.066 O1N NA0 2 NA0 O2N O2N O -1 1 N N N -15.111 180.832 11.077 -2.274 -3.790 -2.225 O2N NA0 3 NA0 O5D O5D O 0 1 N N N -15.705 179.884 13.316 -3.705 -2.034 -0.998 O5D NA0 4 NA0 C5D C5D C 0 1 N N N -16.090 178.755 12.511 -5.035 -2.268 -1.466 C5D NA0 5 NA0 C4B C4B C 0 1 N N S -14.191 186.134 13.742 3.344 -1.186 1.116 C4B NA0 6 NA0 O4B O4B O 0 1 N N N -13.348 186.814 12.802 3.565 -0.747 -0.234 O4B NA0 7 NA0 C3B C3B C 0 1 N N R -13.639 186.520 15.108 4.756 -1.478 1.682 C3B NA0 8 NA0 O3B O3B O 0 1 N N N -12.299 186.061 15.315 5.217 -2.769 1.278 O3B NA0 9 NA0 C2B C2B C 0 1 N N R -13.545 188.000 14.821 5.584 -0.351 1.006 C2B NA0 10 NA0 O2B O2B O 0 1 N N N -12.795 188.684 15.805 6.947 -0.749 0.843 O2B NA0 11 NA0 C1B C1B C 0 1 N N R -12.899 188.008 13.438 4.886 -0.209 -0.364 C1B NA0 12 NA0 N9A N9A N 0 1 Y N N -13.254 189.243 12.711 4.812 1.205 -0.739 N9A NA0 13 NA0 C8A C8A C 0 1 Y N N -14.452 189.674 12.284 3.761 2.045 -0.517 C8A NA0 14 NA0 N7A N7A N 0 1 Y N N -14.296 190.881 11.680 4.034 3.230 -0.980 N7A NA0 15 NA0 C5A C5A C 0 1 Y N N -12.987 191.191 11.746 5.274 3.227 -1.526 C5A NA0 16 NA0 C6A C6A C 0 1 Y N N -12.226 192.271 11.320 6.077 4.190 -2.159 C6A NA0 17 NA0 N6A N6A N 0 1 N N N -12.784 193.319 10.675 5.625 5.487 -2.332 N6A NA0 18 NA0 N1A N1A N 0 1 Y N N -10.903 192.252 11.552 7.283 3.828 -2.586 N1A NA0 19 NA0 C2A C2A C 0 1 Y N N -10.310 191.233 12.196 7.723 2.593 -2.425 C2A NA0 20 NA0 N3A N3A N 0 1 Y N N -11.018 190.187 12.623 7.005 1.658 -1.838 N3A NA0 21 NA0 C4A C4A C 0 1 Y N N -12.346 190.153 12.400 5.790 1.929 -1.373 C4A NA0 22 NA0 O3 O3 O 0 1 N N N -15.962 182.359 12.884 -1.278 -2.606 -0.165 O3 NA0 23 NA0 PA PA P 0 1 N N N -16.256 182.972 14.340 0.018 -3.264 0.528 PA NA0 24 NA0 O2A O2A O 0 1 N N N -17.594 183.623 14.217 -0.371 -3.797 1.997 O2A NA0 25 NA0 O1A O1A O 0 1 N N N -15.971 181.953 15.419 0.498 -4.395 -0.296 O1A NA0 26 NA0 O5B O5B O 0 1 N N N -15.215 184.167 14.509 1.181 -2.157 0.650 O5B NA0 27 NA0 C5B C5B C 0 1 N N N -14.359 184.659 13.482 2.494 -2.458 1.128 C5B NA0 28 NA0 C4D C4D C 0 1 N N S -17.081 177.940 13.321 -5.804 -0.946 -1.500 C4D NA0 29 NA0 O4D O4D O 0 1 N N N -16.419 177.547 14.517 -5.996 -0.447 -0.167 O4D NA0 30 NA0 C3D C3D C 0 1 N N S -17.591 176.658 12.671 -7.233 -1.169 -2.057 C3D NA0 31 NA0 O3D O3D O 0 1 N N N -16.621 176.079 11.776 -7.772 -2.414 -1.607 O3D NA0 32 NA0 C2D C2D C 0 1 N N R -17.788 175.741 13.858 -7.988 0.030 -1.422 C2D NA0 33 NA0 O2D O2D O 0 1 N N N -17.562 174.378 13.490 -9.372 -0.276 -1.246 O2D NA0 34 NA0 C1D C1D C 0 1 N N R -16.680 176.184 14.798 -7.280 0.177 -0.057 C1D NA0 35 NA0 N1N N1N N 1 1 Y N N -16.988 176.115 16.213 -7.118 1.596 0.268 N1N NA0 36 NA0 C2N C2N C 0 1 Y N N -16.505 175.059 16.894 -7.959 2.159 1.110 C2N NA0 37 NA0 C3N C3N C 0 1 Y N N -16.732 174.941 18.260 -7.832 3.511 1.443 C3N NA0 38 NA0 C7N C7N C 0 1 N N N -16.197 173.725 18.963 -8.771 4.141 2.384 C7N NA0 39 NA0 O7N O7N O 0 1 N N N -15.368 173.022 18.412 -9.665 3.487 2.879 O7N NA0 40 NA0 C4N C4N C 0 1 Y N N -17.464 175.949 18.914 -6.794 4.256 0.863 C4N NA0 41 NA0 C5N C5N C 0 1 Y N N -17.949 177.046 18.185 -5.940 3.615 -0.015 C5N NA0 42 NA0 C6N C6N C 0 1 Y N N -17.693 177.106 16.813 -6.130 2.271 -0.287 C6N NA0 43 NA0 P2B P2B P 0 1 N N N -13.503 189.138 17.181 8.180 0.066 1.481 P2B NA0 44 NA0 O2X O2X O 0 1 N N N -12.871 190.478 17.436 9.567 -0.588 0.989 O2X NA0 45 NA0 O1X O1X O 0 1 N N N -14.967 189.257 16.852 8.118 1.478 1.043 O1X NA0 46 NA0 O3X O3X O 0 1 N N N -13.150 188.061 18.143 8.095 -0.002 3.087 O3X NA0 47 NA0 CAA CAA C 0 1 N N N -16.690 173.323 20.306 -8.623 5.600 2.733 CAA NA0 48 NA0 H5B1 H5B1 H 0 0 N N N -13.385 184.148 13.513 2.952 -3.208 0.484 H5B1 NA0 49 NA0 H5B2 H5B2 H 0 0 N N N -14.787 184.476 12.485 2.430 -2.842 2.146 H5B2 NA0 50 NA0 H4B H4B H 0 1 N N N -15.242 186.448 13.656 2.859 -0.400 1.695 H4B NA0 51 NA0 H3B H3B H 0 1 N N N -14.219 186.150 15.967 4.772 -1.380 2.768 H3B NA0 52 NA0 H1B H1B H 0 1 N N N -11.800 188.015 13.475 5.439 -0.765 -1.120 H1B NA0 53 NA0 HA HA H 0 1 N N N -11.865 185.959 14.476 4.665 -3.499 1.589 HA NA0 54 NA0 H2B H2B H 0 1 N N N -14.508 188.530 14.843 5.518 0.575 1.577 H2B NA0 55 NA0 H8A H8A H 0 1 N N N -15.387 189.147 12.402 2.838 1.767 -0.030 H8A NA0 56 NA0 H6A1 H6A1 H 0 0 N N N -12.922 194.072 11.318 4.744 5.739 -2.016 H6A1 NA0 57 NA0 H6A2 H6A2 H 0 0 N N N -12.178 193.617 9.938 6.189 6.143 -2.771 H6A2 NA0 58 NA0 H2A H2A H 0 1 N N N -9.245 191.261 12.370 8.708 2.341 -2.787 H2A NA0 59 NA0 H5D1 H5D1 H 0 0 N N N -16.555 179.097 11.575 -4.997 -2.692 -2.470 H5D1 NA0 60 NA0 H5D2 H5D2 H 0 0 N N N -15.211 178.148 12.248 -5.538 -2.965 -0.796 H5D2 NA0 61 NA0 H4D H4D H 0 1 N N N -17.959 178.589 13.454 -5.271 -0.214 -2.105 H4D NA0 62 NA0 H3D H3D H 0 1 N N N -18.493 176.830 12.065 -7.244 -1.110 -3.145 H3D NA0 63 NA0 H1D H1D H 0 1 N N N -15.842 175.494 14.622 -7.866 -0.317 0.718 H1D NA0 64 NA0 HB HB H 0 1 N N N -17.015 175.952 10.921 -8.665 -2.596 -1.932 HB NA0 65 NA0 H2D H2D H 0 1 N N N -18.802 175.796 14.280 -7.864 0.929 -2.025 H2D NA0 66 NA0 HC HC H 0 1 N N N -17.512 174.309 12.544 -9.841 -0.464 -2.071 HC NA0 67 NA0 HD HD H 0 1 N N N -15.938 174.300 16.376 -8.753 1.571 1.548 HD NA0 68 NA0 H6N H6N H 0 1 N N N -18.056 177.940 16.231 -5.460 1.768 -0.969 H6N NA0 69 NA0 H4N H4N H 0 1 N N N -17.652 175.879 19.975 -6.667 5.302 1.097 H4N NA0 70 NA0 H5N H5N H 0 1 N N N -18.509 177.828 18.675 -5.129 4.156 -0.480 H5N NA0 71 NA0 H2X H2X H 0 1 N N N -12.738 190.593 18.370 10.355 -0.147 1.336 H2X NA0 72 NA0 HAA1 HAA1 H 0 0 N N N -15.838 173.224 20.995 -9.204 6.201 2.035 HAA1 NA0 73 NA0 HAA2 HAA2 H 0 0 N N N -17.382 174.089 20.687 -8.985 5.769 3.747 HAA2 NA0 74 NA0 HAA3 HAA3 H 0 0 N N N -17.214 172.359 20.230 -7.573 5.883 2.670 HAA3 NA0 75 NA0 H21 H21 H 0 1 N N N -17.960 183.761 15.083 -0.695 -3.108 2.593 H21 NA0 76 NA0 H3X H3X H 0 1 N N N -13.075 187.235 17.680 8.130 -0.900 3.445 H3X NA0 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NA0 PA O1A DOUB N N 1 NA0 PA O2A SING N N 2 NA0 PA O5B SING N N 3 NA0 PA O3 SING N N 4 NA0 O5B C5B SING N N 5 NA0 C5B C4B SING N N 6 NA0 C4B O4B SING N N 7 NA0 C4B C3B SING N N 8 NA0 O4B C1B SING N N 9 NA0 C3B O3B SING N N 10 NA0 C3B C2B SING N N 11 NA0 C2B O2B SING N N 12 NA0 C2B C1B SING N N 13 NA0 O2B P2B SING N N 14 NA0 C1B N9A SING N N 15 NA0 N9A C8A SING Y N 16 NA0 N9A C4A SING Y N 17 NA0 C8A N7A DOUB Y N 18 NA0 N7A C5A SING Y N 19 NA0 C5A C6A DOUB Y N 20 NA0 C5A C4A SING Y N 21 NA0 C6A N6A SING N N 22 NA0 C6A N1A SING Y N 23 NA0 N1A C2A DOUB Y N 24 NA0 C2A N3A SING Y N 25 NA0 N3A C4A DOUB Y N 26 NA0 O3 PN SING N N 27 NA0 PN O1N DOUB N N 28 NA0 PN O2N SING N N 29 NA0 PN O5D SING N N 30 NA0 O5D C5D SING N N 31 NA0 C5D C4D SING N N 32 NA0 C4D O4D SING N N 33 NA0 C4D C3D SING N N 34 NA0 O4D C1D SING N N 35 NA0 C3D O3D SING N N 36 NA0 C3D C2D SING N N 37 NA0 C2D O2D SING N N 38 NA0 C2D C1D SING N N 39 NA0 C1D N1N SING N N 40 NA0 N1N C2N SING Y N 41 NA0 N1N C6N DOUB Y N 42 NA0 C2N C3N DOUB Y N 43 NA0 C3N C7N SING N N 44 NA0 C3N C4N SING Y N 45 NA0 C7N O7N DOUB N N 46 NA0 C7N CAA SING N N 47 NA0 C4N C5N DOUB Y N 48 NA0 C5N C6N SING Y N 49 NA0 P2B O1X DOUB N N 50 NA0 P2B O2X SING N N 51 NA0 P2B O3X SING N N 52 NA0 C5B H5B1 SING N N 53 NA0 C5B H5B2 SING N N 54 NA0 C4B H4B SING N N 55 NA0 C3B H3B SING N N 56 NA0 C1B H1B SING N N 57 NA0 O3B HA SING N N 58 NA0 C2B H2B SING N N 59 NA0 C8A H8A SING N N 60 NA0 N6A H6A1 SING N N 61 NA0 N6A H6A2 SING N N 62 NA0 C2A H2A SING N N 63 NA0 C5D H5D1 SING N N 64 NA0 C5D H5D2 SING N N 65 NA0 C4D H4D SING N N 66 NA0 C3D H3D SING N N 67 NA0 C1D H1D SING N N 68 NA0 O3D HB SING N N 69 NA0 C2D H2D SING N N 70 NA0 O2D HC SING N N 71 NA0 C2N HD SING N N 72 NA0 C6N H6N SING N N 73 NA0 C4N H4N SING N N 74 NA0 C5N H5N SING N N 75 NA0 O2X H2X SING N N 76 NA0 O3X H3X SING N N 77 NA0 CAA HAA1 SING N N 78 NA0 CAA HAA2 SING N N 79 NA0 CAA HAA3 SING N N 80 NA0 O2A H21 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NA0 SMILES_CANONICAL CACTVS 3.352 "CC(=O)c1ccc[n+](c1)[C@@H]2O[C@@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" NA0 SMILES CACTVS 3.352 "CC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" NA0 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)c1ccc[n+](c1)[C@H]2[C@@H]([C@@H]([C@@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O" NA0 SMILES "OpenEye OEToolkits" 1.6.1 "CC(=O)c1ccc[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O" NA0 InChI InChI 1.03 "InChI=1S/C22H29N6O17P3/c1-10(29)11-3-2-4-27(5-11)21-17(32)15(30)12(42-21)6-40-47(36,37)45-48(38,39)41-7-13-16(31)18(44-46(33,34)35)22(43-13)28-9-26-14-19(23)24-8-25-20(14)28/h2-5,8-9,12-13,15-18,21-22,30-32H,6-7H2,1H3,(H5-,23,24,25,33,34,35,36,37,38,39)/t12-,13-,15+,16+,17+,18+,21+,22+/m0/s1" NA0 InChIKey InChI 1.03 CWZSJEPJRFQEBR-SIEFPTHMSA-N # _pdbx_chem_comp_identifier.comp_id NA0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "[[(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2S,3S,4R,5R)-5-(3-ethanoylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NA0 "Create component" 2010-07-21 EBI NA0 "Modify aromatic_flag" 2011-06-04 RCSB NA0 "Modify descriptor" 2011-06-04 RCSB NA0 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NA0 _pdbx_chem_comp_synonyms.name "[[(2S,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-HYDROXY-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] [(2S,3S,4R,5R)-5-(3-ETHANOYLPYRIDIN-1-IUM-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL PHOSPHATE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##