data_NDQ # _chem_comp.id NDQ _chem_comp.name "2-[3-[(4-azanyl-2-methoxy-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-11-26 _chem_comp.pdbx_modified_date 2020-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NDQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TJ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NDQ C4 C1 C 0 1 Y N N 26.442 12.264 2.166 -1.742 -0.455 0.440 C4 NDQ 1 NDQ C5 C2 C 0 1 Y N N 26.692 12.223 0.771 -0.836 -0.859 -0.455 C5 NDQ 2 NDQ C2 C3 C 0 1 Y N N 24.932 13.776 1.335 -2.747 -2.367 -0.094 C2 NDQ 3 NDQ "C2'" C4 C 0 1 Y N N 22.374 10.045 4.508 -6.787 1.271 -0.386 "C2'" NDQ 4 NDQ C35 C5 C 0 1 N N N 24.944 13.309 3.789 -3.836 -0.988 1.548 C35 NDQ 5 NDQ "C4'" C6 C 0 1 Y N N 22.649 12.052 3.528 -5.867 -0.794 0.060 "C4'" NDQ 6 NDQ C4A C7 C 0 1 N N N 27.176 11.414 3.131 -1.621 0.845 1.192 C4A NDQ 7 NDQ "C5'" C8 C 0 1 Y N N 23.983 12.146 4.082 -4.898 -0.175 0.852 "C5'" NDQ 8 NDQ "C6'" C9 C 0 1 Y N N 24.330 11.097 4.868 -4.937 1.199 0.987 "C6'" NDQ 9 NDQ "C7'" C10 C 0 1 N N N 22.064 7.959 5.439 -7.698 3.422 -0.809 "C7'" NDQ 10 NDQ "N1'" N1 N 0 1 Y N N 23.539 10.039 5.104 -5.884 1.884 0.362 "N1'" NDQ 11 NDQ N3 N2 N 1 1 Y N N 25.464 13.145 2.425 -2.753 -1.283 0.607 N3 NDQ 12 NDQ "N3'" N3 N 0 1 Y N N 21.888 10.985 3.749 -6.787 -0.043 -0.537 "N3'" NDQ 13 NDQ "N4'" N4 N 0 1 N N N 22.163 12.999 2.756 -5.870 -2.170 -0.101 "N4'" NDQ 14 NDQ "O2'" O1 O 0 1 N N N 21.454 9.012 4.657 -7.738 2.007 -1.009 "O2'" NDQ 15 NDQ S1 S1 S 0 1 Y N N 25.640 13.278 -0.120 -1.363 -2.413 -1.097 S1 NDQ 16 NDQ C5A C11 C 0 1 N N N 27.727 11.328 0.121 0.416 -0.117 -0.847 C5A NDQ 17 NDQ C5B C12 C 0 1 N N N 28.005 11.561 -1.357 1.568 -0.544 0.065 C5B NDQ 18 NDQ O11 O2 O 0 1 N N N 27.325 13.278 -3.632 5.305 0.803 -0.317 O11 NDQ 19 NDQ O12 O3 O 0 1 N N N 25.504 11.549 -4.265 4.528 -1.479 0.432 O12 NDQ 20 NDQ O13 O4 O 0 1 N N N 28.099 10.958 -4.168 4.043 0.467 1.965 O13 NDQ 21 NDQ O21 O5 O 0 1 N N N 26.257 14.555 -5.492 7.500 2.140 -0.871 O21 NDQ 22 NDQ O22 O6 O 0 1 N N N 28.601 13.522 -5.760 7.428 0.447 1.001 O22 NDQ 23 NDQ O23 O7 O 0 1 N N N 28.104 15.536 -4.299 7.372 -0.440 -1.362 O23 NDQ 24 NDQ O5G O8 O 0 1 N N N 26.814 11.444 -2.128 2.755 0.159 -0.306 O5G NDQ 25 NDQ P1 P1 P 0 1 N N N 26.890 11.709 -3.661 4.166 -0.044 0.443 P1 NDQ 26 NDQ P2 P2 P 0 1 N N N 27.620 14.263 -4.899 6.912 0.731 -0.357 P2 NDQ 27 NDQ H1 H1 H 0 1 N N N 24.145 14.513 1.396 -3.510 -3.131 -0.057 H1 NDQ 28 NDQ H2 H2 H 0 1 N N N 25.776 13.294 4.509 -3.440 -0.422 2.391 H2 NDQ 29 NDQ H3 H3 H 0 1 N N N 24.406 14.265 3.870 -4.270 -1.921 1.907 H3 NDQ 30 NDQ H4 H4 H 0 1 N N N 28.071 11.948 3.484 -1.161 0.662 2.163 H4 NDQ 31 NDQ H5 H5 H 0 1 N N N 26.524 11.185 3.987 -1.003 1.539 0.622 H5 NDQ 32 NDQ H6 H6 H 0 1 N N N 27.478 10.478 2.639 -2.612 1.276 1.335 H6 NDQ 33 NDQ H7 H7 H 0 1 N N N 25.304 11.114 5.333 -4.205 1.709 1.595 H7 NDQ 34 NDQ H8 H8 H 0 1 N N N 21.348 7.134 5.566 -8.512 3.890 -1.362 H8 NDQ 35 NDQ H9 H9 H 0 1 N N N 22.961 7.590 4.920 -7.805 3.642 0.253 H9 NDQ 36 NDQ H10 H10 H 0 1 N N N 22.348 8.353 6.426 -6.745 3.812 -1.166 H10 NDQ 37 NDQ H11 H11 H 0 1 N N N 21.248 12.741 2.447 -6.547 -2.592 -0.652 H11 NDQ 38 NDQ H12 H12 H 0 1 N N N 22.112 13.855 3.271 -5.196 -2.711 0.339 H12 NDQ 39 NDQ H13 H13 H 0 1 N N N 27.387 10.288 0.236 0.667 -0.348 -1.882 H13 NDQ 40 NDQ H14 H14 H 0 1 N N N 28.674 11.466 0.663 0.250 0.955 -0.744 H14 NDQ 41 NDQ H15 H15 H 0 1 N N N 28.734 10.815 -1.707 1.318 -0.313 1.100 H15 NDQ 42 NDQ H16 H16 H 0 1 N N N 28.421 12.571 -1.489 1.734 -1.617 -0.038 H16 NDQ 43 NDQ H17 H17 H 0 1 N N N 27.844 10.400 -4.893 3.808 1.401 2.049 H17 NDQ 44 NDQ H18 H18 H 0 1 N N N 26.214 14.208 -6.375 8.465 2.169 -0.920 H18 NDQ 45 NDQ H19 H19 H 0 1 N N N 29.002 15.691 -4.566 7.069 -0.319 -2.272 H19 NDQ 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NDQ O22 P2 DOUB N N 1 NDQ O21 P2 SING N N 2 NDQ P2 O23 SING N N 3 NDQ P2 O11 SING N N 4 NDQ O12 P1 DOUB N N 5 NDQ O13 P1 SING N N 6 NDQ P1 O11 SING N N 7 NDQ P1 O5G SING N N 8 NDQ O5G C5B SING N N 9 NDQ C5B C5A SING N N 10 NDQ S1 C5 SING Y N 11 NDQ S1 C2 SING Y N 12 NDQ C5A C5 SING N N 13 NDQ C5 C4 DOUB Y N 14 NDQ C2 N3 DOUB Y N 15 NDQ C4 N3 SING Y N 16 NDQ C4 C4A SING N N 17 NDQ N3 C35 SING N N 18 NDQ "N4'" "C4'" SING N N 19 NDQ "C4'" "N3'" DOUB Y N 20 NDQ "C4'" "C5'" SING Y N 21 NDQ "N3'" "C2'" SING Y N 22 NDQ C35 "C5'" SING N N 23 NDQ "C5'" "C6'" DOUB Y N 24 NDQ "C2'" "O2'" SING N N 25 NDQ "C2'" "N1'" DOUB Y N 26 NDQ "O2'" "C7'" SING N N 27 NDQ "C6'" "N1'" SING Y N 28 NDQ C2 H1 SING N N 29 NDQ C35 H2 SING N N 30 NDQ C35 H3 SING N N 31 NDQ C4A H4 SING N N 32 NDQ C4A H5 SING N N 33 NDQ C4A H6 SING N N 34 NDQ "C6'" H7 SING N N 35 NDQ "C7'" H8 SING N N 36 NDQ "C7'" H9 SING N N 37 NDQ "C7'" H10 SING N N 38 NDQ "N4'" H11 SING N N 39 NDQ "N4'" H12 SING N N 40 NDQ C5A H13 SING N N 41 NDQ C5A H14 SING N N 42 NDQ C5B H15 SING N N 43 NDQ C5B H16 SING N N 44 NDQ O13 H17 SING N N 45 NDQ O21 H18 SING N N 46 NDQ O23 H19 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NDQ InChI InChI 1.03 "InChI=1S/C12H18N4O8P2S/c1-8-10(3-4-23-26(20,21)24-25(17,18)19)27-7-16(8)6-9-5-14-12(22-2)15-11(9)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1" NDQ InChIKey InChI 1.03 PWBCVHDHRGCQHM-UHFFFAOYSA-O NDQ SMILES_CANONICAL CACTVS 3.385 "COc1ncc(C[n+]2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1" NDQ SMILES CACTVS 3.385 "COc1ncc(C[n+]2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1" NDQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(sc[n+]1Cc2cnc(nc2N)OC)CCOP(=O)(O)OP(=O)(O)O" NDQ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(sc[n+]1Cc2cnc(nc2N)OC)CCOP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id NDQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3-[(4-azanyl-2-methoxy-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NDQ "Create component" 2019-11-26 PDBE NDQ "Initial release" 2020-07-08 RCSB ##