data_NND # _chem_comp.id NND _chem_comp.name "(2R,3R,4R,5S)-2-(HYDROXYMETHYL)-1-NONYLPIPERIDINE-3,4,5-TRIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H31 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms N-NONYL-DEOXYNOJIRIMYCIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-06-18 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.411 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NND _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NND O6 O6 O 0 1 N N N 34.726 34.349 -1.162 -2.648 2.662 1.173 O6 NND 1 NND C6 C6 C 0 1 N N N 33.904 33.517 -0.292 -2.683 2.474 -0.243 C6 NND 2 NND C5 C5 C 0 1 N N R 34.692 32.358 0.388 -2.917 0.995 -0.556 C5 NND 3 NND C4 C4 C 0 1 N N R 35.907 32.828 1.212 -4.205 0.527 0.124 C4 NND 4 NND O4 O4 O 0 1 N N N 35.474 33.862 2.100 -5.310 1.282 -0.377 O4 NND 5 NND O3 O3 O 0 1 N N N 37.804 32.037 2.625 -5.596 -1.415 0.503 O3 NND 6 NND C2 C2 C 0 1 N N S 37.043 30.551 0.924 -3.209 -1.753 0.311 C2 NND 7 NND O2 O2 O 0 1 N N N 37.211 29.303 1.629 -3.380 -3.134 -0.015 O2 NND 8 NND N1 N1 N 0 1 N N N 35.297 31.503 -0.643 -1.784 0.205 -0.057 N1 NND 9 NND C8 C8 C 0 1 N N N 34.417 31.361 -1.813 -0.512 0.718 -0.583 C8 NND 10 NND C7 C7 C 0 1 N N N 35.087 30.419 -2.780 0.651 -0.013 0.092 C7 NND 11 NND C1 C1 C 0 1 N N N 35.940 30.290 -0.096 -1.949 -1.219 -0.374 C1 NND 12 NND C9 C9 C 0 1 N N N 34.541 30.759 -4.160 1.976 0.522 -0.456 C9 NND 13 NND C10 C10 C 0 1 N N N 35.132 29.894 -5.271 3.138 -0.209 0.219 C10 NND 14 NND C14 C14 C 0 1 N N N 34.396 30.356 -6.540 4.463 0.325 -0.329 C14 NND 15 NND C13 C13 C 0 1 N N N 35.210 30.024 -7.785 5.626 -0.405 0.345 C13 NND 16 NND C12 C12 C 0 1 N N N 35.816 31.288 -8.366 6.951 0.129 -0.203 C12 NND 17 NND C16 C16 C 0 1 N N N 38.112 31.666 -9.096 9.438 -0.067 -0.076 C16 NND 18 NND C11 C11 C 0 1 N N N 36.837 30.937 -9.439 8.113 -0.601 0.472 C11 NND 19 NND C31 C31 C 0 1 N N R 36.611 31.642 1.916 -4.424 -0.959 -0.175 C31 NND 20 NND H6 H6 H 0 1 N N N 34.905 35.177 -0.732 -2.503 3.579 1.445 H6 NND 21 NND H6C1 1H6C H 0 0 N N N 33.486 34.157 0.499 -3.493 3.068 -0.668 H6C1 NND 22 NND H6C2 2H6C H 0 0 N N N 33.127 33.057 -0.921 -1.735 2.792 -0.675 H6C2 NND 23 NND H5 H5 H 0 1 N N N 33.952 31.860 1.032 -3.005 0.862 -1.634 H5 NND 24 NND H4 H4 H 0 1 N N N 36.681 33.251 0.554 -4.123 0.674 1.201 H4 NND 25 NND HA HA H 0 1 N N N 35.378 33.508 2.976 -6.162 1.038 0.011 HA NND 26 NND H31 H31 H 0 1 N N N 35.856 31.261 2.620 -4.547 -1.100 -1.249 H31 NND 27 NND H3 H3 H 0 1 N N N 38.524 32.124 2.011 -5.795 -2.350 0.358 H3 NND 28 NND H2 H2 H 0 1 N N N 37.970 30.891 0.439 -3.110 -1.644 1.391 H2 NND 29 NND HB HB H 0 1 N N N 37.248 28.588 1.004 -2.645 -3.698 0.261 HB NND 30 NND H1C1 1H1C H 0 0 N N N 36.386 29.740 -0.938 -1.080 -1.773 -0.020 H1C1 NND 31 NND H1C2 2H1C H 0 0 N N N 35.153 29.732 0.433 -2.042 -1.342 -1.453 H1C2 NND 32 NND H8C1 1H8C H 0 0 N N N 33.442 30.955 -1.505 -0.470 0.551 -1.659 H8C1 NND 33 NND H8C2 2H8C H 0 0 N N N 34.246 32.339 -2.286 -0.438 1.786 -0.378 H8C2 NND 34 NND H7C1 1H7C H 0 0 N N N 36.179 30.552 -2.754 0.609 0.155 1.168 H7C1 NND 35 NND H7C2 2H7C H 0 0 N N N 34.882 29.370 -2.519 0.577 -1.081 -0.113 H7C2 NND 36 NND H9C1 1H9C H 0 0 N N N 33.452 30.606 -4.147 2.017 0.354 -1.533 H9C1 NND 37 NND H9C2 2H9C H 0 0 N N N 34.816 31.802 -4.374 2.050 1.590 -0.251 H9C2 NND 38 NND H101 1H10 H 0 0 N N N 36.218 30.047 -5.361 3.097 -0.042 1.295 H101 NND 39 NND H102 2H10 H 0 0 N N N 35.002 28.819 -5.079 3.065 -1.277 0.014 H102 NND 40 NND H141 1H14 H 0 0 N N N 33.424 29.844 -6.599 4.505 0.158 -1.406 H141 NND 41 NND H142 2H14 H 0 0 N N N 34.253 31.445 -6.490 4.537 1.393 -0.124 H142 NND 42 NND H131 1H13 H 0 0 N N N 36.016 29.326 -7.515 5.584 -0.238 1.422 H131 NND 43 NND H132 2H13 H 0 0 N N N 34.549 29.564 -8.535 5.552 -1.473 0.141 H132 NND 44 NND H121 1H12 H 0 0 N N N 35.018 31.900 -8.812 6.992 -0.038 -1.279 H121 NND 45 NND H122 2H12 H 0 0 N N N 36.317 31.848 -7.563 7.025 1.197 0.002 H122 NND 46 NND H111 1H11 H 0 0 N N N 37.012 29.851 -9.457 8.072 -0.434 1.549 H111 NND 47 NND H112 2H11 H 0 0 N N N 36.474 31.234 -10.434 8.040 -1.669 0.267 H112 NND 48 NND H161 1H16 H 0 0 N N N 38.692 31.843 -10.014 9.480 -0.234 -1.152 H161 NND 49 NND H162 2H16 H 0 0 N N N 37.868 32.629 -8.625 9.512 1.001 0.129 H162 NND 50 NND H163 3H16 H 0 0 N N N 38.706 31.057 -8.399 10.267 -0.588 0.405 H163 NND 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NND O6 C6 SING N N 1 NND O6 H6 SING N N 2 NND C6 C5 SING N N 3 NND C6 H6C1 SING N N 4 NND C6 H6C2 SING N N 5 NND C5 C4 SING N N 6 NND C5 N1 SING N N 7 NND C5 H5 SING N N 8 NND C4 O4 SING N N 9 NND C4 C31 SING N N 10 NND C4 H4 SING N N 11 NND O4 HA SING N N 12 NND O3 C31 SING N N 13 NND O3 H3 SING N N 14 NND C2 O2 SING N N 15 NND C2 C1 SING N N 16 NND C2 C31 SING N N 17 NND C2 H2 SING N N 18 NND O2 HB SING N N 19 NND N1 C8 SING N N 20 NND N1 C1 SING N N 21 NND C8 C7 SING N N 22 NND C8 H8C1 SING N N 23 NND C8 H8C2 SING N N 24 NND C7 C9 SING N N 25 NND C7 H7C1 SING N N 26 NND C7 H7C2 SING N N 27 NND C1 H1C1 SING N N 28 NND C1 H1C2 SING N N 29 NND C9 C10 SING N N 30 NND C9 H9C1 SING N N 31 NND C9 H9C2 SING N N 32 NND C10 C14 SING N N 33 NND C10 H101 SING N N 34 NND C10 H102 SING N N 35 NND C14 C13 SING N N 36 NND C14 H141 SING N N 37 NND C14 H142 SING N N 38 NND C13 C12 SING N N 39 NND C13 H131 SING N N 40 NND C13 H132 SING N N 41 NND C12 C11 SING N N 42 NND C12 H121 SING N N 43 NND C12 H122 SING N N 44 NND C16 C11 SING N N 45 NND C16 H161 SING N N 46 NND C16 H162 SING N N 47 NND C16 H163 SING N N 48 NND C11 H111 SING N N 49 NND C11 H112 SING N N 50 NND C31 H31 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NND SMILES ACDLabs 10.04 "OCC1N(CCCCCCCCC)CC(O)C(O)C1O" NND SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCN1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO" NND SMILES CACTVS 3.341 "CCCCCCCCCN1C[CH](O)[CH](O)[CH](O)[CH]1CO" NND SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCC[N@@]1C[C@@H]([C@H]([C@@H]([C@H]1CO)O)O)O" NND SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCN1CC(C(C(C1CO)O)O)O" NND InChI InChI 1.03 "InChI=1S/C15H31NO4/c1-2-3-4-5-6-7-8-9-16-10-13(18)15(20)14(19)12(16)11-17/h12-15,17-20H,2-11H2,1H3/t12-,13+,14-,15-/m1/s1" NND InChIKey InChI 1.03 FTSCEGKYKXESFF-LXTVHRRPSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NND "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonylpiperidine-3,4,5-triol" NND "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonyl-piperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NND "Create component" 2007-06-18 RCSB NND "Modify descriptor" 2011-06-04 RCSB NND "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id NND _pdbx_chem_comp_synonyms.name N-NONYL-DEOXYNOJIRIMYCIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##