data_NVG # _chem_comp.id NVG _chem_comp.name "4-AMINO-1-(5-{[3-(1H-BENZIMIDAZOL-2-YL)PROPANOYL]AMINO}-5-DEOXY-ALPHA-L-LYXOFURANOSYL)PYRIMIDIN-2(1H)-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-06-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NVG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NVG OAC OAC O 0 1 N N N 12.944 -9.971 14.961 -4.160 0.892 -1.788 OAC NVG 1 NVG CAV CAV C 0 1 N N N 13.041 -9.037 15.762 -4.585 1.419 -0.773 CAV NVG 2 NVG NAO NAO N 0 1 N N N 12.319 -7.914 15.550 -5.208 2.593 -0.856 NAO NVG 3 NVG CAT CAT C 0 1 N N N 12.373 -6.865 16.391 -5.680 3.188 0.232 CAT NVG 4 NVG NAA NAA N 0 1 N N N 11.648 -5.777 16.153 -6.322 4.400 0.134 NAA NVG 5 NVG CAF CAF C 0 1 N N N 13.190 -6.897 17.522 -5.521 2.569 1.489 CAF NVG 6 NVG CAG CAG C 0 1 N N N 13.954 -8.027 17.784 -4.886 1.375 1.557 CAG NVG 7 NVG NBD NBD N 0 1 N N N 13.896 -9.124 16.900 -4.422 0.801 0.412 NBD NVG 8 NVG CBC CBC C 0 1 N N R 14.718 -10.360 17.183 -3.738 -0.493 0.470 CBC NVG 9 NVG OAS OAS O 0 1 N N N 15.246 -10.416 18.560 -2.454 -0.408 -0.169 OAS NVG 10 NVG CBA CBA C 0 1 N N R 15.951 -10.487 16.258 -4.524 -1.554 -0.340 CBA NVG 11 NVG OAE OAE O 0 1 N N N 15.989 -11.801 15.674 -5.532 -2.172 0.463 OAE NVG 12 NVG CAZ CAZ C 0 1 N N S 17.161 -10.283 17.168 -3.391 -2.558 -0.687 CAZ NVG 13 NVG OAD OAD O 0 1 N N N 17.818 -11.539 17.298 -3.179 -3.477 0.387 OAD NVG 14 NVG CBB CBB C 0 1 N N S 16.561 -9.801 18.516 -2.171 -1.628 -0.863 CBB NVG 15 NVG CAN CAN C 0 1 N N N 17.302 -10.092 19.864 -0.926 -2.287 -0.266 CAN NVG 16 NVG NAQ NAQ N 0 1 N N N 18.231 -11.230 19.737 0.224 -1.395 -0.428 NAQ NVG 17 NVG CAU CAU C 0 1 N N N 19.541 -11.141 19.982 1.437 -1.769 0.025 CAU NVG 18 NVG OAB OAB O 0 1 N N N 20.112 -10.110 20.337 1.576 -2.845 0.567 OAB NVG 19 NVG CAL CAL C 0 1 N N N 20.339 -12.442 19.789 2.620 -0.850 -0.142 CAL NVG 20 NVG CAM CAM C 0 1 N N N 19.505 -13.707 20.045 3.865 -1.509 0.455 CAM NVG 21 NVG CAW CAW C 0 1 Y N N 19.126 -13.843 21.522 5.049 -0.591 0.288 CAW NVG 22 NVG NAR NAR N 0 1 Y N N 18.290 -13.043 22.184 5.851 -0.162 1.299 NAR NVG 23 NVG CAY CAY C 0 1 Y N N 18.206 -13.468 23.438 6.813 0.656 0.742 CAY NVG 24 NVG CAK CAK C 0 1 Y N N 17.491 -13.009 24.543 7.886 1.374 1.252 CAK NVG 25 NVG CAI CAI C 0 1 Y N N 17.605 -13.678 25.761 8.678 2.116 0.402 CAI NVG 26 NVG CAH CAH C 0 1 Y N N 18.430 -14.799 25.870 8.409 2.149 -0.960 CAH NVG 27 NVG CAJ CAJ C 0 1 Y N N 19.146 -15.254 24.763 7.358 1.449 -1.480 CAJ NVG 28 NVG CAX CAX C 0 1 Y N N 19.030 -14.583 23.547 6.542 0.690 -0.637 CAX NVG 29 NVG NAP NAP N 0 1 Y N N 19.576 -14.784 22.352 5.455 -0.097 -0.845 NAP NVG 30 NVG HAA1 1HAA H 0 0 N N N 11.466 -5.302 17.014 -6.431 4.823 -0.732 HAA1 NVG 31 NVG HAA2 2HAA H 0 0 N N N 12.151 -5.170 15.538 -6.667 4.833 0.932 HAA2 NVG 32 NVG HAF HAF H 0 1 N N N 13.228 -6.049 18.189 -5.900 3.040 2.384 HAF NVG 33 NVG HAG HAG H 0 1 N N N 14.587 -8.065 18.658 -4.751 0.882 2.508 HAG NVG 34 NVG HBC HBC H 0 1 N N N 14.002 -11.177 17.010 -3.624 -0.813 1.506 HBC NVG 35 NVG HBA HBA H 0 1 N N N 15.929 -9.758 15.435 -4.955 -1.120 -1.242 HBA NVG 36 NVG HBB HBB H 0 1 N N N 16.615 -8.703 18.489 -2.012 -1.424 -1.921 HBB NVG 37 NVG HAE HAE H 0 1 N N N 15.997 -11.727 14.727 -6.049 -2.844 -0.003 HAE NVG 38 NVG HAZ HAZ H 0 1 N N N 17.898 -9.558 16.794 -3.614 -3.090 -1.612 HAZ NVG 39 NVG HAD HAD H 0 1 N N N 17.964 -11.911 16.436 -3.949 -4.024 0.594 HAD NVG 40 NVG HAN1 1HAN H 0 0 N N N 17.874 -9.198 20.154 -1.089 -2.481 0.794 HAN1 NVG 41 NVG HAN2 2HAN H 0 0 N N N 16.549 -10.344 20.625 -0.731 -3.228 -0.781 HAN2 NVG 42 NVG HAQ HAQ H 0 1 N N N 17.861 -12.114 19.453 0.113 -0.534 -0.862 HAQ NVG 43 NVG HAL1 1HAL H 0 0 N N N 20.702 -12.473 18.751 2.783 -0.657 -1.202 HAL1 NVG 44 NVG HAL2 2HAL H 0 0 N N N 21.160 -12.436 20.521 2.425 0.091 0.373 HAL2 NVG 45 NVG HAM1 1HAM H 0 0 N N N 18.584 -13.650 19.447 3.702 -1.702 1.515 HAM1 NVG 46 NVG HAM2 2HAM H 0 0 N N N 20.109 -14.582 19.762 4.060 -2.450 -0.060 HAM2 NVG 47 NVG HAR HAR H 0 1 N N N 17.808 -12.256 21.800 5.764 -0.389 2.238 HAR NVG 48 NVG HAK HAK H 0 1 N N N 16.853 -12.142 24.456 8.099 1.352 2.311 HAK NVG 49 NVG HAI HAI H 0 1 N N N 17.054 -13.328 26.622 9.512 2.675 0.798 HAI NVG 50 NVG HAH HAH H 0 1 N N N 18.514 -15.316 26.815 9.038 2.734 -1.614 HAH NVG 51 NVG HAJ HAJ H 0 1 N N N 19.786 -16.120 24.847 7.158 1.482 -2.540 HAJ NVG 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NVG OAC CAV DOUB N N 1 NVG CAV NAO SING N N 2 NVG CAV NBD SING N N 3 NVG NAO CAT DOUB N N 4 NVG CAT NAA SING N N 5 NVG CAT CAF SING N N 6 NVG NAA HAA1 SING N N 7 NVG NAA HAA2 SING N N 8 NVG CAF CAG DOUB N N 9 NVG CAF HAF SING N N 10 NVG CAG NBD SING N N 11 NVG CAG HAG SING N N 12 NVG NBD CBC SING N N 13 NVG CBC OAS SING N N 14 NVG CBC CBA SING N N 15 NVG CBC HBC SING N N 16 NVG OAS CBB SING N N 17 NVG CBA OAE SING N N 18 NVG CBA CAZ SING N N 19 NVG CBA HBA SING N N 20 NVG OAE HAE SING N N 21 NVG CAZ OAD SING N N 22 NVG CAZ CBB SING N N 23 NVG CAZ HAZ SING N N 24 NVG OAD HAD SING N N 25 NVG CBB CAN SING N N 26 NVG CBB HBB SING N N 27 NVG CAN NAQ SING N N 28 NVG CAN HAN1 SING N N 29 NVG CAN HAN2 SING N N 30 NVG NAQ CAU SING N N 31 NVG NAQ HAQ SING N N 32 NVG CAU OAB DOUB N N 33 NVG CAU CAL SING N N 34 NVG CAL CAM SING N N 35 NVG CAL HAL1 SING N N 36 NVG CAL HAL2 SING N N 37 NVG CAM CAW SING N N 38 NVG CAM HAM1 SING N N 39 NVG CAM HAM2 SING N N 40 NVG CAW NAR SING Y N 41 NVG CAW NAP DOUB Y N 42 NVG NAR CAY SING Y N 43 NVG NAR HAR SING N N 44 NVG CAY CAK SING Y N 45 NVG CAY CAX DOUB Y N 46 NVG CAK CAI DOUB Y N 47 NVG CAK HAK SING N N 48 NVG CAI CAH SING Y N 49 NVG CAI HAI SING N N 50 NVG CAH CAJ DOUB Y N 51 NVG CAH HAH SING N N 52 NVG CAJ CAX SING Y N 53 NVG CAJ HAJ SING N N 54 NVG CAX NAP SING Y N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NVG SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)CNC(=O)CCc3nc4ccccc4n3" NVG SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@@H](CNC(=O)CCc3[nH]c4ccccc4n3)[C@@H](O)[C@H]2O" NVG SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)CCc3[nH]c4ccccc4n3)[CH](O)[CH]2O" NVG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)[nH]c(n2)CCC(=O)NC[C@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=NC4=O)N)O)O" NVG SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)[nH]c(n2)CCC(=O)NCC3C(C(C(O3)N4C=CC(=NC4=O)N)O)O" NVG InChI InChI 1.03 "InChI=1S/C19H22N6O5/c20-13-7-8-25(19(29)24-13)18-17(28)16(27)12(30-18)9-21-15(26)6-5-14-22-10-3-1-2-4-11(10)23-14/h1-4,7-8,12,16-18,27-28H,5-6,9H2,(H,21,26)(H,22,23)(H2,20,24,29)/t12-,16+,17+,18+/m0/s1" NVG InChIKey InChI 1.03 IHRYIMVLMZNCKA-FCRVUTKVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NVG "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-1-(5-{[3-(1H-benzimidazol-2-yl)propanoyl]amino}-5-deoxy-alpha-L-lyxofuranosyl)pyrimidin-2(1H)-one" NVG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[[(2S,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-3-(1H-benzimidazol-2-yl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NVG "Create component" 2007-06-07 RCSB NVG "Modify descriptor" 2011-06-04 RCSB #