data_NX6 # _chem_comp.id NX6 _chem_comp.name "N-[(benzyloxy)carbonyl]-L-aspartic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-01-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 267.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NX6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QH1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NX6 C C C 0 1 N N N N N N -10.812 -38.529 -6.022 2.996 1.789 -0.219 C NX6 1 NX6 N N N 0 1 N N N N N N -11.365 -40.174 -4.309 1.273 0.083 -0.327 N NX6 2 NX6 O O O 0 1 N N N N N N -9.996 -38.167 -6.848 2.189 2.499 -0.772 O NX6 3 NX6 C1 C1 C 0 1 N N N N N N -10.558 -40.342 -3.298 0.232 0.391 0.471 C1 NX6 4 NX6 O1 O1 O 0 1 N N N N N N -9.343 -40.426 -3.309 0.429 0.901 1.557 O1 NX6 5 NX6 C2 C2 C 0 1 N N N N N N -10.631 -40.115 -0.817 -2.098 0.493 0.978 C2 NX6 6 NX6 O2 O2 O 0 1 N N N N N N -11.315 -40.405 -2.110 -1.026 0.135 0.066 O2 NX6 7 NX6 C3 C3 C 0 1 Y N N N N N -9.979 -38.737 -0.785 -3.424 0.134 0.359 C3 NX6 8 NX6 C4 C4 C 0 1 Y N N N N N -8.962 -38.495 0.099 -3.972 -1.117 0.573 C4 NX6 9 NX6 C5 C5 C 0 1 Y N N N N N -8.312 -37.260 0.138 -5.188 -1.445 0.006 C5 NX6 10 NX6 C6 C6 C 0 1 Y N N N N N -8.747 -36.262 -0.709 -5.858 -0.523 -0.777 C6 NX6 11 NX6 C7 C7 C 0 1 Y N N N N N -9.792 -36.496 -1.589 -5.310 0.728 -0.992 C7 NX6 12 NX6 C8 C8 C 0 1 Y N N N N N -10.412 -37.735 -1.627 -4.096 1.059 -0.419 C8 NX6 13 NX6 CA CA C 0 1 N N S N N N -10.881 -39.986 -5.645 2.642 0.363 0.113 CA NX6 14 NX6 CB CB C 0 1 N N N N N N -11.826 -40.659 -6.604 3.611 -0.582 -0.601 CB NX6 15 NX6 CG CG C 0 1 N N N N N N -11.573 -42.170 -6.739 3.336 -2.001 -0.173 CG NX6 16 NX6 OD1 OD1 O 0 1 N Y N N N N -10.384 -42.675 -6.673 4.069 -3.007 -0.675 OD1 NX6 17 NX6 OD2 OD2 O 0 1 N N N N N N -12.659 -42.828 -6.936 2.455 -2.232 0.621 OD2 NX6 18 NX6 OXT OXT O 0 1 N N N N N N -11.551 -37.689 -5.487 4.209 2.271 0.095 OXT NX6 19 NX6 HN HN H 0 1 N N N N N N -12.352 -40.176 -4.147 1.116 -0.323 -1.194 HN NX6 20 NX6 H2 H2 H 0 1 N N N N N N -11.379 -40.163 -0.012 -1.975 -0.051 1.914 H2 NX6 21 NX6 H2A H2A H 0 1 N N N N N N -9.848 -40.872 -0.663 -2.066 1.565 1.173 H2A NX6 22 NX6 H4 H4 H 0 1 N N N N N N -8.656 -39.275 0.780 -3.448 -1.837 1.184 H4 NX6 23 NX6 H5 H5 H 0 1 N N N N N N -7.488 -37.090 0.815 -5.616 -2.423 0.173 H5 NX6 24 NX6 H6 H6 H 0 1 N N N N N N -8.271 -35.293 -0.686 -6.808 -0.780 -1.221 H6 NX6 25 NX6 H7 H7 H 0 1 N N N N N N -10.125 -35.708 -2.249 -5.833 1.448 -1.603 H7 NX6 26 NX6 H8 H8 H 0 1 N N N N N N -11.228 -37.914 -2.311 -3.671 2.038 -0.583 H8 NX6 27 NX6 HA HA H 0 1 N N N N N N -9.869 -40.414 -5.694 2.715 0.212 1.190 HA NX6 28 NX6 HB HB H 0 1 N N N N N N -12.853 -40.512 -6.237 3.475 -0.495 -1.679 HB NX6 29 NX6 HBA HBA H 0 1 N N N N N N -11.699 -40.198 -7.595 4.635 -0.317 -0.341 HBA NX6 30 NX6 HOD1 HOD1 H 0 0 N N N N N N -10.432 -43.616 -6.793 3.855 -3.900 -0.371 HOD1 NX6 31 NX6 HOXT HOXT H 0 0 N N N N N N -11.351 -36.826 -5.831 4.390 3.192 -0.138 HOXT NX6 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NX6 O C DOUB N N 1 NX6 C CA SING N N 2 NX6 C OXT SING N N 3 NX6 CA N SING N N 4 NX6 N C1 SING N N 5 NX6 N HN SING N N 6 NX6 O1 C1 DOUB N N 7 NX6 C1 O2 SING N N 8 NX6 O2 C2 SING N N 9 NX6 C2 C3 SING N N 10 NX6 C2 H2 SING N N 11 NX6 C2 H2A SING N N 12 NX6 C8 C3 DOUB Y N 13 NX6 C3 C4 SING Y N 14 NX6 C4 C5 DOUB Y N 15 NX6 C4 H4 SING N N 16 NX6 C6 C5 SING Y N 17 NX6 C5 H5 SING N N 18 NX6 C7 C6 DOUB Y N 19 NX6 C6 H6 SING N N 20 NX6 C8 C7 SING Y N 21 NX6 C7 H7 SING N N 22 NX6 C8 H8 SING N N 23 NX6 CB CA SING N N 24 NX6 CA HA SING N N 25 NX6 CG CB SING N N 26 NX6 CB HB SING N N 27 NX6 CB HBA SING N N 28 NX6 OD2 CG DOUB N N 29 NX6 CG OD1 SING N N 30 NX6 OD1 HOD1 SING N N 31 NX6 OXT HOXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NX6 SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)OCc1ccccc1)CC(=O)O" NX6 SMILES_CANONICAL CACTVS 3.370 "OC(=O)C[C@H](NC(=O)OCc1ccccc1)C(O)=O" NX6 SMILES CACTVS 3.370 "OC(=O)C[CH](NC(=O)OCc1ccccc1)C(O)=O" NX6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)COC(=O)N[C@@H](CC(=O)O)C(=O)O" NX6 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)COC(=O)NC(CC(=O)O)C(=O)O" NX6 InChI InChI 1.03 "InChI=1S/C12H13NO6/c14-10(15)6-9(11(16)17)13-12(18)19-7-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,13,18)(H,14,15)(H,16,17)/t9-/m0/s1" NX6 InChIKey InChI 1.03 XYXYXSKSTZAEJW-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NX6 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-aspartic acid" NX6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-(phenylmethoxycarbonylamino)butanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NX6 "Create component" 2011-01-26 RCSB NX6 "Modify aromatic_flag" 2011-06-04 RCSB NX6 "Modify descriptor" 2011-06-04 RCSB NX6 "Modify leaving atom flag" 2014-09-02 EBI NX6 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id NX6 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CG _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #