data_NXB # _chem_comp.id NXB _chem_comp.name "(2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-02 _chem_comp.pdbx_modified_date 2020-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 280.283 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NXB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TU1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NXB C10 C1 C 0 1 Y N N 40.046 -39.136 27.769 -3.394 -2.098 -0.321 C10 NXB 1 NXB C17 C2 C 0 1 N N R 44.568 -34.697 25.640 2.530 -0.886 0.566 C17 NXB 2 NXB C02 C3 C 0 1 N N R 43.572 -32.538 24.573 3.679 0.438 -1.209 C02 NXB 3 NXB C03 C4 C 0 1 N N N 42.375 -33.462 24.396 2.314 1.025 -1.586 C03 NXB 4 NXB C05 C5 C 0 1 N N R 43.223 -35.289 25.286 1.211 -0.249 0.121 C05 NXB 5 NXB C06 C6 C 0 1 N N N 42.957 -36.449 26.240 0.278 -0.110 1.326 C06 NXB 6 NXB C08 C7 C 0 1 Y N N 41.424 -38.223 26.199 -2.060 -0.367 0.393 C08 NXB 7 NXB C12 C8 C 0 1 Y N N 40.047 -40.060 25.639 -4.292 0.025 -0.430 C12 NXB 8 NXB C14 C9 C 0 1 Y N N 40.983 -39.154 25.231 -3.095 0.537 0.098 C14 NXB 9 NXB C16 C10 C 0 1 Y N N 42.549 -37.745 24.331 -1.431 1.690 0.874 C16 NXB 10 NXB C19 C11 C 0 1 N N R 44.819 -33.331 24.981 3.480 -0.967 -0.633 C19 NXB 11 NXB N01 N1 N 0 1 N N N 43.243 -31.502 25.532 4.320 1.294 -0.202 N01 NXB 12 NXB N07 N2 N 0 1 Y N N 42.265 -37.529 25.559 -1.025 0.389 0.881 N07 NXB 13 NXB N09 N3 N 0 1 Y N N 40.970 -38.219 27.437 -2.252 -1.663 0.170 N09 NXB 14 NXB N11 N4 N 0 1 Y N N 39.602 -40.034 26.876 -4.392 -1.286 -0.619 N11 NXB 15 NXB N13 N5 N 0 1 N N N 39.537 -41.042 24.700 -5.344 0.868 -0.744 N13 NXB 16 NXB N15 N6 N 0 1 Y N N 41.756 -38.809 23.972 -2.646 1.775 0.415 N15 NXB 17 NXB O04 O1 O 0 1 N N N 42.277 -34.300 25.509 1.469 1.043 -0.433 O04 NXB 18 NXB O18 O2 O 0 1 N N N 44.615 -34.631 27.036 3.123 -0.088 1.592 O18 NXB 19 NXB O20 O3 O 0 1 N N N 45.599 -32.541 25.818 4.739 -1.494 -0.210 O20 NXB 20 NXB H1 H1 H 0 1 N N N 39.653 -39.151 28.775 -3.516 -3.157 -0.491 H1 NXB 21 NXB H2 H2 H 0 1 N N N 45.346 -35.387 25.281 2.339 -1.888 0.948 H2 NXB 22 NXB H3 H3 H 0 1 N N N 43.779 -32.067 23.601 4.311 0.382 -2.095 H3 NXB 23 NXB H4 H4 H 0 1 N N N 41.457 -32.863 24.304 2.445 2.042 -1.956 H4 NXB 24 NXB H5 H5 H 0 1 N N N 42.509 -34.069 23.488 1.855 0.412 -2.361 H5 NXB 25 NXB H6 H6 H 0 1 N N N 43.221 -35.644 24.245 0.739 -0.879 -0.633 H6 NXB 26 NXB H7 H7 H 0 1 N N N 43.916 -36.823 26.629 0.152 -1.083 1.801 H7 NXB 27 NXB H8 H8 H 0 1 N N N 42.336 -36.093 27.076 0.711 0.590 2.041 H8 NXB 28 NXB H9 H9 H 0 1 N N N 43.255 -37.210 23.713 -0.832 2.528 1.202 H9 NXB 29 NXB H10 H10 H 0 1 N N N 45.385 -33.526 24.058 3.049 -1.616 -1.396 H10 NXB 30 NXB H11 H11 H 0 1 N N N 44.028 -30.894 25.649 5.255 0.975 0.002 H11 NXB 31 NXB H12 H12 H 0 1 N N N 42.461 -30.975 25.199 4.325 2.259 -0.498 H12 NXB 32 NXB H14 H14 H 0 1 N N N 38.858 -41.618 25.155 -6.166 0.502 -1.108 H14 NXB 33 NXB H15 H15 H 0 1 N N N 39.112 -40.573 23.926 -5.260 1.823 -0.602 H15 NXB 34 NXB H16 H16 H 0 1 N N N 44.455 -35.494 27.400 3.965 -0.432 1.921 H16 NXB 35 NXB H17 H17 H 0 1 N N N 46.375 -33.024 26.077 5.393 -1.567 -0.919 H17 NXB 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NXB N15 C16 DOUB Y N 1 NXB N15 C14 SING Y N 2 NXB C16 N07 SING Y N 3 NXB C03 C02 SING N N 4 NXB C03 O04 SING N N 5 NXB C02 C19 SING N N 6 NXB C02 N01 SING N N 7 NXB N13 C12 SING N N 8 NXB C19 C17 SING N N 9 NXB C19 O20 SING N N 10 NXB C14 C12 DOUB Y N 11 NXB C14 C08 SING Y N 12 NXB C05 O04 SING N N 13 NXB C05 C17 SING N N 14 NXB C05 C06 SING N N 15 NXB N07 C08 SING Y N 16 NXB N07 C06 SING N N 17 NXB C12 N11 SING Y N 18 NXB C17 O18 SING N N 19 NXB C08 N09 DOUB Y N 20 NXB N11 C10 DOUB Y N 21 NXB N09 C10 SING Y N 22 NXB C10 H1 SING N N 23 NXB C17 H2 SING N N 24 NXB C02 H3 SING N N 25 NXB C03 H4 SING N N 26 NXB C03 H5 SING N N 27 NXB C05 H6 SING N N 28 NXB C06 H7 SING N N 29 NXB C06 H8 SING N N 30 NXB C16 H9 SING N N 31 NXB C19 H10 SING N N 32 NXB N01 H11 SING N N 33 NXB N01 H12 SING N N 34 NXB N13 H14 SING N N 35 NXB N13 H15 SING N N 36 NXB O18 H16 SING N N 37 NXB O20 H17 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NXB InChI InChI 1.03 "InChI=1S/C11H16N6O3/c12-5-2-20-6(9(19)8(5)18)1-17-4-16-7-10(13)14-3-15-11(7)17/h3-6,8-9,18-19H,1-2,12H2,(H2,13,14,15)/t5-,6-,8-,9+/m1/s1" NXB InChIKey InChI 1.03 YFNWLMALNRKCLH-GCXDCGAKSA-N NXB SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CO[C@H](Cn2cnc3c(N)ncnc23)[C@H](O)[C@@H]1O" NXB SMILES CACTVS 3.385 "N[CH]1CO[CH](Cn2cnc3c(N)ncnc23)[CH](O)[CH]1O" NXB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C[C@@H]3[C@@H]([C@@H]([C@@H](CO3)N)O)O)N" NXB SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CC3C(C(C(CO3)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id NXB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NXB "Create component" 2020-01-02 PDBE NXB "Initial release" 2020-03-04 RCSB ##