data_NXX # _chem_comp.id NXX _chem_comp.name "1-[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-3-carboxypyridinium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N6 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2007-09-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 665.418 _chem_comp.one_letter_code ? _chem_comp.three_letter_code NXX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2QTR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal NXX O7N O7N O 0 1 N N N 15.177 93.389 -3.171 -8.790 -4.880 2.503 O7N NXX 1 NXX C7N C7N C 0 1 N N N 15.698 94.385 -3.705 -8.289 -4.346 1.373 C7N NXX 2 NXX O8N O8N O 0 1 N N N 15.713 94.549 -4.948 -8.393 -4.944 0.321 O8N NXX 3 NXX C3N C3N C 0 1 Y N N 16.327 95.427 -2.829 -7.614 -3.033 1.412 C3N NXX 4 NXX C4N C4N C 0 1 Y N N 16.946 96.590 -3.347 -7.483 -2.336 2.619 C4N NXX 5 NXX C5N C5N C 0 1 Y N N 17.524 97.547 -2.487 -6.841 -1.109 2.602 C5N NXX 6 NXX C6N C6N C 0 1 Y N N 17.469 97.305 -1.080 -6.355 -0.617 1.405 C6N NXX 7 NXX C2N C2N C 0 1 Y N N 16.298 95.234 -1.441 -7.090 -2.468 0.248 C2N NXX 8 NXX N1N N1N N 1 1 Y N N 16.854 96.149 -0.625 -6.493 -1.296 0.282 N1N NXX 9 NXX C1M C1M C 0 1 N N R 16.768 95.837 0.809 -5.962 -0.731 -0.961 C1M NXX 10 NXX C2M C2M C 0 1 N N R 18.050 95.246 1.428 -6.932 0.332 -1.537 C2M NXX 11 NXX O2M O2M O 0 1 N N N 18.271 93.860 1.157 -7.930 -0.280 -2.357 O2M NXX 12 NXX C3M C3M C 0 1 N N S 17.814 95.514 2.893 -5.983 1.212 -2.385 C3M NXX 13 NXX O3M O3M O 0 1 N N N 17.034 94.419 3.428 -6.039 0.827 -3.760 O3M NXX 14 NXX O4M O4M O 0 1 N N N 16.467 96.999 1.575 -4.755 0.019 -0.704 O4M NXX 15 NXX C4M C4M C 0 1 N N R 17.074 96.851 2.885 -4.584 0.929 -1.803 C4M NXX 16 NXX C5M C5M C 0 1 N N N 17.980 98.074 3.118 -3.954 2.232 -1.307 C5M NXX 17 NXX O5M O5M O 0 1 N N N 19.114 98.079 2.238 -2.621 1.977 -0.861 O5M NXX 18 NXX PN PN P 0 1 N N R 20.363 99.113 2.433 -1.658 3.125 -0.271 PN NXX 19 NXX O1N O1N O 0 1 N N N 21.388 98.902 1.399 -1.551 4.230 -1.251 O1N NXX 20 NXX O2N O2N O 0 1 N N N 19.684 100.430 2.543 -2.274 3.688 1.106 O2N NXX 21 NXX O3A O3A O 0 1 N N N 20.970 98.552 3.850 -0.197 2.510 0.006 O3A NXX 22 NXX PA PA P 0 1 N N R 21.796 99.375 5.016 1.253 3.153 0.287 PA NXX 23 NXX O1A O1A O 0 1 N N N 22.524 98.399 5.946 1.857 3.733 -1.088 O1A NXX 24 NXX O2A O2A O 0 1 N N N 22.645 100.438 4.314 1.123 4.251 1.271 O2A NXX 25 NXX O5B O5B O 0 1 N N N 20.635 100.096 5.872 2.238 2.022 0.871 O5B NXX 26 NXX C5B C5B C 0 1 N N N 19.652 99.361 6.548 3.566 2.301 1.318 C5B NXX 27 NXX C4B C4B C 0 1 N N R 18.343 100.171 6.658 4.221 1.009 1.809 C4B NXX 28 NXX C3B C3B C 0 1 N N S 17.866 100.863 5.388 5.614 1.317 2.392 C3B NXX 29 NXX O3B O3B O 0 1 N N N 16.462 100.744 5.381 5.678 0.927 3.765 O3B NXX 30 NXX C2B C2B C 0 1 N N R 18.285 102.312 5.537 6.581 0.459 1.540 C2B NXX 31 NXX O2P O2P O 0 1 N N N 17.526 103.177 4.701 7.590 -0.137 2.358 O2P NXX 32 NXX C1B C1B C 0 1 N N R 18.092 102.504 7.030 5.631 -0.620 0.959 C1B NXX 33 NXX O4B O4B O 0 1 N N N 18.475 101.235 7.613 4.410 0.107 0.705 O4B NXX 34 NXX N9A N9A N 0 1 Y N N 18.947 103.534 7.669 6.174 -1.169 -0.286 N9A NXX 35 NXX C8A C8A C 0 1 Y N N 20.269 103.396 7.944 5.869 -0.757 -1.549 C8A NXX 36 NXX N7A N7A N 0 1 Y N N 20.720 104.509 8.523 6.532 -1.462 -2.419 N7A NXX 37 NXX C5A C5A C 0 1 Y N N 19.672 105.364 8.616 7.303 -2.368 -1.771 C5A NXX 38 NXX C4A C4A C 0 1 Y N N 18.539 104.735 8.067 7.087 -2.187 -0.395 C4A NXX 39 NXX C6A C6A C 0 1 Y N N 19.553 106.654 9.124 8.205 -3.366 -2.176 C6A NXX 40 NXX N6A N6A N 0 1 N N N 20.667 107.239 9.647 8.463 -3.586 -3.517 N6A NXX 41 NXX N1A N1A N 0 1 Y N N 18.326 107.293 9.079 8.806 -4.094 -1.240 N1A NXX 42 NXX C2A C2A C 0 1 Y N N 17.222 106.672 8.543 8.566 -3.891 0.043 C2A NXX 43 NXX N3A N3A N 0 1 Y N N 17.313 105.394 8.034 7.738 -2.960 0.468 N3A NXX 44 NXX HO7N HO7N H 0 0 N N N 14.819 92.820 -3.842 -9.223 -5.741 2.428 HO7N NXX 45 NXX H4N H4N H 0 1 N N N 16.976 96.747 -4.415 -7.872 -2.744 3.540 H4N NXX 46 NXX H5N H5N H 0 1 N N N 17.994 98.436 -2.880 -6.722 -0.543 3.514 H5N NXX 47 NXX H6N H6N H 0 1 N N N 17.899 98.010 -0.384 -5.854 0.340 1.389 H6N NXX 48 NXX H2N H2N H 0 1 N N N 15.830 94.353 -1.027 -7.180 -2.996 -0.690 H2N NXX 49 NXX H1M H1M H 0 1 N N N 15.971 95.080 0.851 -5.778 -1.519 -1.691 H1M NXX 50 NXX H2M H2M H 0 1 N N N 18.964 95.694 1.011 -7.391 0.913 -0.737 H2M NXX 51 NXX HO2M HO2M H 0 0 N N N 18.320 93.724 0.218 -8.561 0.344 -2.740 HO2M NXX 52 NXX H3M H3M H 0 1 N N N 18.714 95.576 3.523 -6.239 2.266 -2.274 H3M NXX 53 NXX HO3M HO3M H 0 0 N N N 16.863 93.786 2.741 -6.913 0.929 -4.162 HO3M NXX 54 NXX H4M H4M H 0 1 N N N 16.349 96.827 3.712 -3.951 0.476 -2.565 H4M NXX 55 NXX H5M1 1H5M H 0 0 N N N 18.341 98.051 4.157 -3.933 2.958 -2.119 H5M1 NXX 56 NXX H5M2 2H5M H 0 0 N N N 17.389 98.980 2.917 -4.544 2.629 -0.480 H5M2 NXX 57 NXX HO2N HO2N H 0 0 N N N 19.539 100.637 3.459 -2.374 3.017 1.795 HO2N NXX 58 NXX HO1A HO1A H 0 0 N N N 22.675 97.579 5.490 1.970 3.068 -1.780 HO1A NXX 59 NXX H5B1 1H5B H 0 0 N N N 19.454 98.432 5.994 4.147 2.713 0.493 H5B1 NXX 60 NXX H5B2 2H5B H 0 0 N N N 20.014 99.134 7.562 3.530 3.023 2.134 H5B2 NXX 61 NXX H4B H4B H 0 1 N N N 17.616 99.394 6.936 3.595 0.540 2.567 H4B NXX 62 NXX H3B H3B H 0 1 N N N 18.275 100.444 4.457 5.848 2.376 2.284 H3B NXX 63 NXX HO3B HO3B H 0 0 N N N 16.142 100.717 6.275 6.550 1.045 4.167 HO3B NXX 64 NXX H2B H2B H 0 1 N N N 19.308 102.554 5.212 7.028 1.053 0.743 H2B NXX 65 NXX HO2P HO2P H 0 0 N N N 17.357 103.992 5.159 8.154 0.502 2.815 HO2P NXX 66 NXX H1B H1B H 0 1 N N N 17.055 102.834 7.191 5.461 -1.413 1.687 H1B NXX 67 NXX H8A H8A H 0 1 N N N 20.863 102.521 7.727 5.178 0.037 -1.792 H8A NXX 68 NXX H6A1 1H6A H 0 0 N N N 21.340 107.382 8.922 8.019 -3.048 -4.191 H6A1 NXX 69 NXX H6A2 2H6A H 0 0 N N N 20.422 108.119 10.053 9.088 -4.279 -3.784 H6A2 NXX 70 NXX H2A H2A H 0 1 N N N 16.275 107.190 8.521 9.076 -4.505 0.771 H2A NXX 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal NXX O8N C7N DOUB N N 1 NXX C7N O7N SING N N 2 NXX C7N C3N SING N N 3 NXX C4N C3N DOUB Y N 4 NXX C4N C5N SING Y N 5 NXX C3N C2N SING Y N 6 NXX C5N C6N DOUB Y N 7 NXX C2N N1N DOUB Y N 8 NXX C6N N1N SING Y N 9 NXX N1N C1M SING N N 10 NXX C1M C2M SING N N 11 NXX C1M O4M SING N N 12 NXX O2M C2M SING N N 13 NXX O1N PN DOUB N N 14 NXX C2M C3M SING N N 15 NXX O4M C4M SING N N 16 NXX O5M PN SING N N 17 NXX O5M C5M SING N N 18 NXX PN O2N SING N N 19 NXX PN O3A SING N N 20 NXX C4M C3M SING N N 21 NXX C4M C5M SING N N 22 NXX C3M O3M SING N N 23 NXX O3A PA SING N N 24 NXX O2A PA DOUB N N 25 NXX O2P C2B SING N N 26 NXX PA O5B SING N N 27 NXX PA O1A SING N N 28 NXX O3B C3B SING N N 29 NXX C3B C2B SING N N 30 NXX C3B C4B SING N N 31 NXX C2B C1B SING N N 32 NXX O5B C5B SING N N 33 NXX C5B C4B SING N N 34 NXX C4B O4B SING N N 35 NXX C1B O4B SING N N 36 NXX C1B N9A SING N N 37 NXX N9A C8A SING Y N 38 NXX N9A C4A SING Y N 39 NXX C8A N7A DOUB Y N 40 NXX N3A C4A DOUB Y N 41 NXX N3A C2A SING Y N 42 NXX C4A C5A SING Y N 43 NXX N7A C5A SING Y N 44 NXX C2A N1A DOUB Y N 45 NXX C5A C6A DOUB Y N 46 NXX N1A C6A SING Y N 47 NXX C6A N6A SING N N 48 NXX O7N HO7N SING N N 49 NXX C4N H4N SING N N 50 NXX C5N H5N SING N N 51 NXX C6N H6N SING N N 52 NXX C2N H2N SING N N 53 NXX C1M H1M SING N N 54 NXX C2M H2M SING N N 55 NXX O2M HO2M SING N N 56 NXX C3M H3M SING N N 57 NXX O3M HO3M SING N N 58 NXX C4M H4M SING N N 59 NXX C5M H5M1 SING N N 60 NXX C5M H5M2 SING N N 61 NXX O2N HO2N SING N N 62 NXX O1A HO1A SING N N 63 NXX C5B H5B1 SING N N 64 NXX C5B H5B2 SING N N 65 NXX C4B H4B SING N N 66 NXX C3B H3B SING N N 67 NXX O3B HO3B SING N N 68 NXX C2B H2B SING N N 69 NXX O2P HO2P SING N N 70 NXX C1B H1B SING N N 71 NXX C8A H8A SING N N 72 NXX N6A H6A1 SING N N 73 NXX N6A H6A2 SING N N 74 NXX C2A H2A SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor NXX SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5cccc(c5)C(O)=O)[C@@H](O)[C@H]3O" NXX SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5cccc(c5)C(O)=O)[CH](O)[CH]3O" NXX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)O" NXX SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)O" NXX InChI InChI 1.03 ;InChI=1S/C21H26N6O15P2/c22-17-12-18(24-7-23-17)27(8-25-12)20-16(31)14(29)11(41-20)6-39-44(36,37)42-43(34,35)38-5-10-13(28)15(30)19(40-10)26-3-1-2-9(4-26)21(32)33/h1-4,7-8,10-11,13-16,19-20,28-31H,5-6H2,(H4-,22,23,24,32,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1 ; NXX InChIKey InChI 1.03 SENPVEZBRZQVST-HISDBWNOSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NXX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4S,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxymethyl]-3,4-dihydroxy-oxolan-2-yl]pyridin-1-ium-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site NXX "Create component" 2007-09-04 RCSB NXX "Modify aromatic_flag" 2011-06-04 RCSB NXX "Modify descriptor" 2011-06-04 RCSB #