data_O1U # _chem_comp.id O1U _chem_comp.name "(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E},16~{E})-4,8,13,17-tetramethyl-3-oxidanyl-19-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]-1-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-2,4,6,8,10,12,14,16-octaen-18-yn-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H54 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms mytiloxanthin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-20 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 598.854 _chem_comp.one_letter_code ? _chem_comp.three_letter_code O1U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8I34 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal O1U C14 C1 C 0 1 N N N 1.818 -5.605 22.236 -2.579 0.413 0.097 C14 O1U 1 O1U C21 C2 C 0 1 N N N -12.950 -1.329 20.982 12.031 -1.172 -1.021 C21 O1U 2 O1U C22 C3 C 0 1 N N N -14.365 -1.632 20.430 13.340 -0.590 -1.594 C22 O1U 3 O1U C23 C4 C 0 1 N N S -14.460 -3.152 20.208 13.609 0.665 -0.727 C23 O1U 4 O1U C24 C5 C 0 1 N N N -13.161 -3.734 20.798 13.168 0.206 0.685 C24 O1U 5 O1U C25 C6 C 0 1 N N R -12.598 -2.667 21.762 11.922 -0.666 0.428 C25 O1U 6 O1U C26 C7 C 0 1 N N N -11.115 -2.767 22.109 10.672 0.159 0.594 C26 O1U 7 O1U C27 C8 C 0 1 N N N -10.243 -3.742 21.548 9.424 -0.445 0.507 C27 O1U 8 O1U C28 C9 C 0 1 N N N -8.931 -3.834 21.993 8.271 0.331 0.548 C28 O1U 9 O1U C29 C10 C 0 1 N N N -7.979 -4.799 21.486 7.010 -0.280 0.461 C29 O1U 10 O1U C11 C11 C 0 1 N N N 5.408 -4.721 22.191 -6.113 1.360 -0.098 C11 O1U 11 O1U C12 C12 C 0 1 N N N 4.210 -5.361 22.122 -4.977 0.585 0.006 C12 O1U 12 O1U C13 C13 C 0 1 N N N 2.921 -4.816 22.450 -3.716 1.188 -0.007 C13 O1U 13 O1U C1 C14 C 0 1 N N N 12.427 -5.920 20.587 -12.214 -1.712 -0.019 C1 O1U 14 O1U C2 C15 C 0 1 N N N 13.601 -6.862 20.254 -13.595 -2.214 -0.443 C2 O1U 15 O1U C3 C16 C 0 1 N N R 14.115 -7.680 21.424 -14.660 -1.385 0.285 C3 O1U 16 O1U O3 O1 O 0 1 N N N 15.122 -8.602 20.962 -15.952 -1.950 0.051 O3 O1U 17 O1U C4 C17 C 0 1 N N N 12.996 -8.460 22.096 -14.619 0.045 -0.258 C4 O1U 18 O1U C5 C18 C 0 1 N N N 11.651 -7.784 22.126 -13.209 0.560 -0.251 C5 O1U 19 O1U C6 C19 C 0 1 N N N 11.383 -6.648 21.442 -12.144 -0.218 -0.149 C6 O1U 20 O1U C7 C20 C 0 1 N N N 10.130 -5.990 21.568 -10.852 0.399 -0.163 C7 O1U 21 O1U C8 C21 C 0 1 N N N 9.091 -5.371 21.695 -9.793 0.905 -0.174 C8 O1U 22 O1U C9 C22 C 0 1 N N N 7.869 -4.702 21.935 -8.501 1.523 -0.188 C9 O1U 23 O1U C10 C23 C 0 1 N N N 6.676 -5.357 22.025 -7.376 0.755 -0.084 C10 O1U 24 O1U C15 C24 C 0 1 N N N 0.468 -5.299 22.543 -1.318 1.015 0.083 C15 O1U 25 O1U C17 C25 C 0 1 N N N 11.802 -5.464 19.261 -11.149 -2.349 -0.913 C17 O1U 26 O1U C16 C26 C 0 1 N N N 12.911 -4.671 21.342 -11.956 -2.107 1.437 C16 O1U 27 O1U C18 C27 C 0 1 N N N 10.645 -8.462 23.002 -12.995 2.047 -0.366 C18 O1U 28 O1U C19 C28 C 0 1 N N N 8.060 -3.199 22.023 -8.383 3.020 -0.317 C19 O1U 29 O1U C20 C29 C 0 1 N N N 2.837 -3.403 22.957 -3.597 2.685 -0.136 C20 O1U 30 O1U O23 O2 O 0 1 N N N -15.569 -3.748 20.892 14.998 1.001 -0.739 O23 O1U 31 O1U O26 O3 O 0 1 N N N -10.652 -1.994 23.005 10.755 1.356 0.803 O26 O1U 32 O1U O28 O4 O 0 1 N N N -8.513 -2.985 22.938 8.365 1.676 0.671 O28 O1U 33 O1U C30 C30 C 0 1 N N N -6.698 -4.780 21.966 5.875 0.495 0.356 C30 O1U 34 O1U C31 C31 C 0 1 N N N -5.593 -5.593 21.595 4.614 -0.108 0.370 C31 O1U 35 O1U C32 C32 C 0 1 N N N -4.336 -5.362 22.085 3.477 0.668 0.266 C32 O1U 36 O1U C33 C33 C 0 1 N N N -3.123 -6.025 21.726 2.216 0.066 0.279 C33 O1U 37 O1U C34 C34 C 0 1 N N N -1.951 -5.483 22.200 1.079 0.842 0.175 C34 O1U 38 O1U C35 C35 C 0 1 N N N -0.623 -5.959 22.052 -0.181 0.239 0.188 C35 O1U 39 O1U C37 C36 C 0 1 N N N -12.954 -0.083 21.867 12.085 -2.701 -1.040 C37 O1U 40 O1U C36 C37 C 0 1 N N N -11.982 -1.099 19.804 10.836 -0.680 -1.840 C36 O1U 41 O1U C38 C38 C 0 1 N N N -13.352 -2.753 23.108 11.901 -1.850 1.396 C38 O1U 42 O1U C39 C39 C 0 1 N N N -8.468 -5.777 20.448 6.898 -1.782 0.482 C39 O1U 43 O1U C40 C40 C 0 1 N N N -3.193 -7.254 20.861 2.098 -1.431 0.408 C40 O1U 44 O1U H1 H1 H 0 1 N N N 1.999 -6.568 21.782 -2.664 -0.660 0.194 H1 O1U 45 O1U H2 H2 H 0 1 N N N -14.518 -1.103 19.478 14.154 -1.308 -1.490 H2 O1U 46 O1U H3 H3 H 0 1 N N N -15.128 -1.310 21.154 13.209 -0.313 -2.640 H3 O1U 47 O1U H4 H4 H 0 1 N N N -14.501 -3.364 19.129 13.004 1.506 -1.066 H4 O1U 48 O1U H5 H5 H 0 1 N N N -13.376 -4.664 21.345 13.955 -0.384 1.158 H5 O1U 49 O1U H6 H6 H 0 1 N N N -12.438 -3.939 19.995 12.911 1.066 1.303 H6 O1U 50 O1U H7 H7 H 0 1 N N N -10.601 -4.409 20.778 9.349 -1.518 0.410 H7 O1U 51 O1U H8 H8 H 0 1 N N N 5.400 -3.659 22.385 -6.028 2.432 -0.191 H8 O1U 52 O1U H9 H9 H 0 1 N N N 4.229 -6.387 21.785 -5.062 -0.488 0.098 H9 O1U 53 O1U H10 H10 H 0 1 N N N 13.269 -7.558 19.470 -13.713 -2.095 -1.521 H10 O1U 54 O1U H11 H11 H 0 1 N N N 14.432 -6.251 19.873 -13.702 -3.265 -0.174 H11 O1U 55 O1U H12 H12 H 0 1 N N N 14.555 -6.995 22.163 -14.450 -1.377 1.354 H12 O1U 56 O1U H13 H13 H 0 1 N N N 15.443 -9.114 21.695 -16.674 -1.474 0.484 H13 O1U 57 O1U H14 H14 H 0 1 N N N 12.882 -9.415 21.561 -15.002 0.055 -1.278 H14 O1U 58 O1U H15 H15 H 0 1 N N N 13.298 -8.656 23.135 -15.241 0.686 0.366 H15 O1U 59 O1U H16 H16 H 0 1 N N N 6.691 -6.435 21.966 -7.461 -0.317 0.008 H16 O1U 60 O1U H17 H17 H 0 1 N N N 0.287 -4.477 23.220 -1.234 2.088 -0.009 H17 O1U 61 O1U H18 H18 H 0 1 N N N 10.959 -4.788 19.466 -11.195 -3.434 -0.816 H18 O1U 62 O1U H19 H19 H 0 1 N N N 12.558 -4.935 18.662 -11.331 -2.069 -1.951 H19 O1U 63 O1U H20 H20 H 0 1 N N N 11.442 -6.342 18.705 -10.162 -1.999 -0.610 H20 O1U 64 O1U H21 H21 H 0 1 N N N 13.364 -4.972 22.298 -12.712 -1.650 2.076 H21 O1U 65 O1U H22 H22 H 0 1 N N N 13.658 -4.141 20.733 -12.007 -3.192 1.533 H22 O1U 66 O1U H23 H23 H 0 1 N N N 12.057 -4.005 21.535 -10.968 -1.761 1.738 H23 O1U 67 O1U H24 H24 H 0 1 N N N 11.094 -9.361 23.449 -13.960 2.548 -0.442 H24 O1U 68 O1U H25 H25 H 0 1 N N N 10.331 -7.774 23.801 -12.466 2.407 0.516 H25 O1U 69 O1U H26 H26 H 0 1 N N N 9.770 -8.749 22.401 -12.403 2.261 -1.257 H26 O1U 70 O1U H27 H27 H 0 1 N N N 7.090 -2.716 22.210 -8.387 3.471 0.675 H27 O1U 71 O1U H28 H28 H 0 1 N N N 8.751 -2.965 22.847 -7.452 3.268 -0.826 H28 O1U 72 O1U H29 H29 H 0 1 N N N 8.479 -2.827 21.076 -9.225 3.402 -0.893 H29 O1U 73 O1U H30 H30 H 0 1 N N N 1.786 -3.147 23.158 -3.537 2.955 -1.190 H30 O1U 74 O1U H31 H31 H 0 1 N N N 3.421 -3.311 23.885 -4.472 3.158 0.310 H31 O1U 75 O1U H32 H32 H 0 1 N N N 3.243 -2.717 22.199 -2.698 3.024 0.378 H32 O1U 76 O1U H33 H33 H 0 1 N N N -15.581 -4.683 20.722 15.219 1.780 -0.211 H33 O1U 77 O1U H34 H34 H 0 1 N N N -9.227 -2.409 23.185 7.516 2.136 0.613 H34 O1U 78 O1U H35 H35 H 0 1 N N N -6.499 -4.046 22.733 5.960 1.568 0.264 H35 O1U 79 O1U H36 H36 H 0 1 N N N -5.749 -6.413 20.910 4.529 -1.180 0.462 H36 O1U 80 O1U H37 H37 H 0 1 N N N -4.251 -4.586 22.832 3.562 1.741 0.173 H37 O1U 81 O1U H38 H38 H 0 1 N N N -2.057 -4.568 22.763 1.164 1.914 0.082 H38 O1U 82 O1U H39 H39 H 0 1 N N N -0.467 -6.889 21.525 -0.266 -0.833 0.280 H39 O1U 83 O1U H40 H40 H 0 1 N N N -13.642 -0.235 22.712 11.177 -3.102 -0.588 H40 O1U 84 O1U H41 H41 H 0 1 N N N -11.939 0.099 22.249 12.162 -3.049 -2.070 H41 O1U 85 O1U H42 H42 H 0 1 N N N -13.284 0.785 21.277 12.953 -3.041 -0.476 H42 O1U 86 O1U H43 H43 H 0 1 N N N -10.976 -0.883 20.192 10.737 0.400 -1.725 H43 O1U 87 O1U H44 H44 H 0 1 N N N -11.947 -2.002 19.177 10.991 -0.921 -2.891 H44 O1U 88 O1U H45 H45 H 0 1 N N N -12.333 -0.248 19.202 9.927 -1.167 -1.486 H45 O1U 89 O1U H46 H46 H 0 1 N N N -12.956 -1.995 23.800 12.820 -2.426 1.286 H46 O1U 90 O1U H47 H47 H 0 1 N N N -14.424 -2.571 22.940 11.823 -1.482 2.419 H47 O1U 91 O1U H48 H48 H 0 1 N N N -13.214 -3.754 23.542 11.045 -2.487 1.173 H48 O1U 92 O1U H49 H49 H 0 1 N N N -9.530 -5.585 20.233 6.951 -2.165 -0.538 H49 O1U 93 O1U H50 H50 H 0 1 N N N -7.880 -5.657 19.526 7.715 -2.200 1.070 H50 O1U 94 O1U H51 H51 H 0 1 N N N -8.351 -6.803 20.827 5.946 -2.069 0.928 H51 O1U 95 O1U H52 H52 H 0 1 N N N -2.177 -7.635 20.682 2.037 -1.701 1.462 H52 O1U 96 O1U H53 H53 H 0 1 N N N -3.790 -8.026 21.369 1.199 -1.770 -0.107 H53 O1U 97 O1U H54 H54 H 0 1 N N N -3.664 -6.999 19.900 2.973 -1.904 -0.039 H54 O1U 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal O1U C17 C1 SING N N 1 O1U C36 C21 SING N N 2 O1U C23 C22 SING N N 3 O1U C23 C24 SING N N 4 O1U C23 O23 SING N N 5 O1U C2 C1 SING N N 6 O1U C2 C3 SING N N 7 O1U C22 C21 SING N N 8 O1U C39 C29 SING N N 9 O1U C1 C16 SING N N 10 O1U C1 C6 SING N N 11 O1U C24 C25 SING N N 12 O1U C40 C33 SING N N 13 O1U O3 C3 SING N N 14 O1U C21 C25 SING N N 15 O1U C21 C37 SING N N 16 O1U C3 C4 SING N N 17 O1U C6 C7 SING N N 18 O1U C6 C5 DOUB N N 19 O1U C29 C30 DOUB N E 20 O1U C29 C28 SING N N 21 O1U C27 C28 DOUB N Z 22 O1U C27 C26 SING N N 23 O1U C7 C8 TRIP N N 24 O1U C31 C30 SING N N 25 O1U C31 C32 DOUB N E 26 O1U C8 C9 SING N N 27 O1U C33 C32 SING N N 28 O1U C33 C34 DOUB N E 29 O1U C25 C26 SING N N 30 O1U C25 C38 SING N N 31 O1U C9 C19 SING N N 32 O1U C9 C10 DOUB N E 33 O1U C28 O28 SING N N 34 O1U C10 C11 SING N N 35 O1U C35 C34 SING N N 36 O1U C35 C15 DOUB N E 37 O1U C4 C5 SING N N 38 O1U C26 O26 DOUB N N 39 O1U C12 C11 DOUB N E 40 O1U C12 C13 SING N N 41 O1U C5 C18 SING N N 42 O1U C14 C13 DOUB N E 43 O1U C14 C15 SING N N 44 O1U C13 C20 SING N N 45 O1U C14 H1 SING N N 46 O1U C22 H2 SING N N 47 O1U C22 H3 SING N N 48 O1U C23 H4 SING N N 49 O1U C24 H5 SING N N 50 O1U C24 H6 SING N N 51 O1U C27 H7 SING N N 52 O1U C11 H8 SING N N 53 O1U C12 H9 SING N N 54 O1U C2 H10 SING N N 55 O1U C2 H11 SING N N 56 O1U C3 H12 SING N N 57 O1U O3 H13 SING N N 58 O1U C4 H14 SING N N 59 O1U C4 H15 SING N N 60 O1U C10 H16 SING N N 61 O1U C15 H17 SING N N 62 O1U C17 H18 SING N N 63 O1U C17 H19 SING N N 64 O1U C17 H20 SING N N 65 O1U C16 H21 SING N N 66 O1U C16 H22 SING N N 67 O1U C16 H23 SING N N 68 O1U C18 H24 SING N N 69 O1U C18 H25 SING N N 70 O1U C18 H26 SING N N 71 O1U C19 H27 SING N N 72 O1U C19 H28 SING N N 73 O1U C19 H29 SING N N 74 O1U C20 H30 SING N N 75 O1U C20 H31 SING N N 76 O1U C20 H32 SING N N 77 O1U O23 H33 SING N N 78 O1U O28 H34 SING N N 79 O1U C30 H35 SING N N 80 O1U C31 H36 SING N N 81 O1U C32 H37 SING N N 82 O1U C34 H38 SING N N 83 O1U C35 H39 SING N N 84 O1U C37 H40 SING N N 85 O1U C37 H41 SING N N 86 O1U C37 H42 SING N N 87 O1U C36 H43 SING N N 88 O1U C36 H44 SING N N 89 O1U C36 H45 SING N N 90 O1U C38 H46 SING N N 91 O1U C38 H47 SING N N 92 O1U C38 H48 SING N N 93 O1U C39 H49 SING N N 94 O1U C39 H50 SING N N 95 O1U C39 H51 SING N N 96 O1U C40 H52 SING N N 97 O1U C40 H53 SING N N 98 O1U C40 H54 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor O1U InChI InChI 1.06 "InChI=1S/C40H54O4/c1-28(17-13-18-30(3)21-22-35-32(5)23-33(41)25-38(35,6)7)15-11-12-16-29(2)19-14-20-31(4)36(43)24-37(44)40(10)27-34(42)26-39(40,8)9/h11-20,24,33-34,41-43H,23,25-27H2,1-10H3/b12-11+,17-13+,19-14+,28-15+,29-16+,30-18+,31-20+,36-24-/t33-,34+,40+/m1/s1" O1U InChIKey InChI 1.06 WSLGBPCJDUQFND-BBPSKTQQSA-N O1U SMILES_CANONICAL CACTVS 3.385 "CC(=C/C=C/C=C(C)/C=C/C=C(C)/C(O)=C/C(=O)[C@]1(C)C[C@@H](O)CC1(C)C)\C=C\C=C(C)\C#CC2=C(C)C[C@@H](O)CC2(C)C" O1U SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(C)C(O)=CC(=O)[C]1(C)C[CH](O)CC1(C)C)C=CC=C(C)C#CC2=C(C)C[CH](O)CC2(C)C" O1U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C(=C/C(=O)[C@@]2(C[C@H](CC2(C)C)O)C)/O)/C)/C" O1U SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C(=CC(=O)C2(CC(CC2(C)C)O)C)O)C)C" # _pdbx_chem_comp_identifier.comp_id O1U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E},16~{E})-4,8,13,17-tetramethyl-3-oxidanyl-19-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]-1-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-2,4,6,8,10,12,14,16-octaen-18-yn-1-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id O1U _pdbx_chem_comp_synonyms.name mytiloxanthin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site O1U "Create component" 2023-01-20 PDBJ O1U "Initial release" 2023-08-16 RCSB #