data_OA9 # _chem_comp.id OA9 _chem_comp.name "Mesaconyl Coenzme A" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 N7 O19 P3 S" _chem_comp.mon_nstd_parent_comp_id COA _chem_comp.pdbx_synonyms "(~{E})-4-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-methyl-4-oxidanylidene-but-2-enoic acid; Mesaconyl-CoA; 2-methylfumaroyl-CoA" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-01 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 879.618 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OA9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8APQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OA9 C01 C1 C 0 1 N N N -74.778 24.481 8.341 13.692 2.841 -1.842 C01 OA9 1 OA9 C02 C2 C 0 1 N N N -74.264 25.459 7.365 13.178 3.159 -0.462 C02 OA9 2 OA9 C03 C3 C 0 1 N N N -73.056 25.996 7.435 13.753 4.135 0.260 C03 OA9 3 OA9 C04 C4 C 0 1 N N N -71.965 25.722 8.469 14.989 4.779 -0.223 C04 OA9 4 OA9 C07 C5 C 0 1 N N N -75.189 25.798 6.336 12.043 2.399 0.097 C07 OA9 5 OA9 C2P C6 C 0 1 N N N -74.908 25.323 3.269 10.013 0.577 0.313 C10 OA9 6 OA9 C3P C7 C 0 1 N N N -76.332 24.869 3.500 9.205 -0.563 -0.310 C11 OA9 7 OA9 C5P C8 C 0 1 N N N -77.357 24.436 1.202 7.335 -2.003 0.296 C13 OA9 8 OA9 C6P C9 C 0 1 N N N -78.426 24.832 0.247 6.272 -2.453 1.264 C15 OA9 9 OA9 C7P C10 C 0 1 N N N -78.012 24.854 -1.225 5.465 -3.594 0.641 C16 OA9 10 OA9 C9P C11 C 0 1 N N N -76.799 27.018 -1.414 3.594 -5.033 1.247 C18 OA9 11 OA9 CAP C12 C 0 1 N N R -75.481 27.822 -1.671 2.456 -5.403 2.163 C20 OA9 12 OA9 CBP C13 C 0 1 N N N -74.426 27.885 -0.491 1.311 -4.404 1.984 C22 OA9 13 OA9 CDP C14 C 0 1 N N N -73.484 26.678 -0.511 0.141 -4.802 2.885 C23 OA9 14 OA9 CEP C15 C 0 1 N N N -75.133 27.912 0.827 1.794 -3.003 2.363 C24 OA9 15 OA9 CCP C16 C 0 1 N N N -73.531 29.182 -0.586 0.854 -4.408 0.523 C25 OA9 16 OA9 C5B C17 C 0 1 N N N -70.960 29.874 -6.123 -5.852 -0.697 -1.214 C35 OA9 17 OA9 C4B C18 C 0 1 N N R -70.033 29.329 -7.238 -6.568 0.069 -0.099 C36 OA9 18 OA9 C1B C19 C 0 1 N N R -69.476 27.343 -8.125 -6.950 2.278 0.482 C38 OA9 19 OA9 C8A C20 C 0 1 Y N N -70.227 24.883 -8.428 -5.537 4.037 -0.648 C40 OA9 20 OA9 C5A C21 C 0 1 Y N N -68.993 23.862 -7.011 -6.261 5.854 0.287 C42 OA9 21 OA9 C6A C22 C 0 1 Y N N -68.283 23.005 -6.149 -6.552 7.153 0.738 C43 OA9 22 OA9 C2A C23 C 0 1 Y N N -67.152 24.832 -5.338 -8.143 6.268 2.156 C46 OA9 23 OA9 C4A C24 C 0 1 Y N N -68.672 25.246 -6.929 -6.982 4.783 0.841 C48 OA9 24 OA9 C2B C25 C 0 1 N N R -70.603 27.765 -9.067 -8.127 1.908 -0.456 C49 OA9 25 OA9 C3B C26 C 0 1 N N S -70.645 29.326 -8.713 -8.021 0.364 -0.516 C51 OA9 26 OA9 N4P N1 N 0 1 N N N -77.269 25.115 2.429 8.172 -1.002 0.632 N12 OA9 27 OA9 N8P N2 N 0 1 N N N -76.770 25.614 -1.468 4.431 -4.032 1.583 N17 OA9 28 OA9 N9A N3 N 0 1 Y N N -69.471 25.881 -7.850 -6.503 3.651 0.232 N39 OA9 29 OA9 N7A N4 N 0 1 Y N N -69.980 23.665 -7.965 -5.397 5.330 -0.615 N41 OA9 30 OA9 N6A N5 N 0 1 N N N -68.499 21.654 -6.115 -5.875 8.248 0.228 N44 OA9 31 OA9 N1A N6 N 0 1 Y N N -67.348 23.478 -5.296 -7.492 7.306 1.664 N45 OA9 32 OA9 N3A N7 N 0 1 Y N N -67.732 25.756 -6.082 -7.905 5.034 1.764 N47 OA9 33 OA9 O05 O1 O 0 1 N N N -72.296 25.662 9.645 15.499 5.837 0.437 O05 OA9 34 OA9 O06 O2 O 0 1 N N N -70.888 25.635 7.983 15.546 4.356 -1.216 O06 OA9 35 OA9 O08 O3 O 0 1 N N N -76.357 25.830 6.380 11.629 2.656 1.211 O08 OA9 36 OA9 O5P O4 O 0 1 N N N -76.536 23.559 0.997 7.437 -2.541 -0.786 O14 OA9 37 OA9 O9P O5 O 0 1 N N N -77.832 27.577 -1.163 3.756 -5.636 0.207 O19 OA9 38 OA9 OAP O6 O 0 1 N N N -74.913 27.143 -2.758 1.995 -6.718 1.843 O21 OA9 39 OA9 O6A O7 O 0 1 N N N -73.090 29.405 -1.817 -0.215 -3.475 0.356 O26 OA9 40 OA9 O4A O8 O 0 1 N N N -71.510 31.300 -2.113 -1.441 -4.503 -1.596 O28 OA9 41 OA9 O5A O9 O 0 1 N N N -74.021 31.708 -1.785 0.111 -2.575 -2.093 O29 OA9 42 OA9 O3A O10 O 0 1 N N N -73.202 31.003 -4.013 -2.177 -2.207 -0.850 O30 OA9 43 OA9 O1A O11 O 0 1 N N N -74.105 31.200 -6.293 -4.130 -3.130 -2.155 O32 OA9 44 OA9 O2A O12 O 0 1 N N N -74.165 28.950 -4.893 -3.103 -0.978 -2.981 O33 OA9 45 OA9 O5B O13 O 0 1 N N N -72.259 29.530 -6.303 -4.538 -1.053 -0.779 O34 OA9 46 OA9 O4B O14 O 0 1 N N N -69.790 27.956 -6.930 -5.920 1.334 0.118 O37 OA9 47 OA9 O2B O15 O 0 1 N N N -70.144 27.378 -10.318 -9.376 2.312 0.108 O50 OA9 48 OA9 O3B O16 O 0 1 N N N -69.886 30.025 -9.525 -8.937 -0.236 0.403 O52 OA9 49 OA9 O7A O17 O 0 1 N N N -69.108 30.860 -11.549 -9.476 -2.388 -0.802 O54 OA9 50 OA9 O8A O18 O 0 1 N N N -71.489 29.949 -11.313 -10.840 -1.840 1.250 O55 OA9 51 OA9 O9A O19 O 0 1 N N N -70.891 32.047 -10.076 -11.147 -0.506 -0.995 O56 OA9 52 OA9 P2A P1 P 0 1 N N N -72.905 31.036 -2.484 -0.941 -3.218 -1.058 P27 OA9 53 OA9 P1A P2 P 0 1 N N N -73.517 30.186 -5.391 -3.501 -1.870 -1.701 P31 OA9 54 OA9 P3B P3 P 0 1 N N N -70.405 30.803 -10.787 -10.086 -1.267 -0.052 P53 OA9 55 OA9 S1P S1 S 0 1 N N N -74.342 26.307 4.702 11.289 1.119 -0.850 S09 OA9 56 OA9 H1 H1 H 0 1 N N N -74.006 24.276 9.097 14.500 2.113 -1.771 H1 OA9 57 OA9 H2 H2 H 0 1 N N N -75.673 24.890 8.833 12.883 2.428 -2.445 H2 OA9 58 OA9 H3 H3 H 0 1 N N N -75.039 23.547 7.821 14.065 3.752 -2.310 H3 OA9 59 OA9 H4 H4 H 0 1 N N N -72.812 26.716 6.668 13.311 4.448 1.194 H4 OA9 60 OA9 H122 H5 H 0 1 N N N -74.258 24.444 3.148 9.349 1.412 0.538 H5 OA9 61 OA9 H51A H6 H 0 1 N N N -74.863 25.940 2.360 10.483 0.229 1.233 H6 OA9 62 OA9 HN8 H7 H 0 1 N N N -76.706 25.385 4.396 8.735 -0.215 -1.229 H7 OA9 63 OA9 H61A H8 H 0 1 N N N -76.311 23.785 3.683 9.869 -1.398 -0.535 H8 OA9 64 OA9 H61 H9 H 0 1 N N N -78.768 25.842 0.519 6.742 -2.801 2.184 H9 OA9 65 OA9 H62 H10 H 0 1 N N N -79.259 24.121 0.355 5.608 -1.619 1.489 H10 OA9 66 OA9 H71 H11 H 0 1 N N N -78.823 25.313 -1.810 4.994 -3.246 -0.278 H11 OA9 67 OA9 H72 H12 H 0 1 N N N -77.859 23.818 -1.561 6.129 -4.429 0.416 H12 OA9 68 OA9 H10 H13 H 0 1 N N N -75.748 28.852 -1.951 2.800 -5.380 3.197 H13 OA9 69 OA9 H131 H14 H 0 1 N N N -72.768 26.757 0.320 0.445 -4.727 3.929 H14 OA9 70 OA9 H132 H15 H 0 1 N N N -74.070 25.754 -0.403 -0.701 -4.135 2.703 H15 OA9 71 OA9 H133 H16 H 0 1 N N N -72.937 26.656 -1.465 -0.154 -5.828 2.666 H16 OA9 72 OA9 H141 H17 H 0 1 N N N -74.393 27.956 1.640 2.551 -2.674 1.651 H17 OA9 73 OA9 H142 H18 H 0 1 N N N -75.784 28.798 0.876 0.952 -2.310 2.342 H18 OA9 74 OA9 H143 H19 H 0 1 N N N -75.742 27.003 0.935 2.222 -3.024 3.365 H19 OA9 75 OA9 H121 H20 H 0 1 N N N -72.666 29.063 0.083 1.688 -4.125 -0.119 H20 OA9 76 OA9 H5 H21 H 0 1 N N N -74.128 30.047 -0.263 0.511 -5.407 0.253 H21 OA9 77 OA9 H6 H22 H 0 1 N N N -70.621 29.472 -5.157 -6.413 -1.600 -1.452 H22 OA9 78 OA9 H52A H23 H 0 1 N N N -70.886 30.971 -6.110 -5.783 -0.067 -2.101 H23 OA9 79 OA9 H4B H24 H 0 1 N N N -69.095 29.904 -7.246 -6.555 -0.517 0.820 H24 OA9 80 OA9 H1B H25 H 0 1 N N N -68.504 27.669 -8.524 -7.235 2.152 1.526 H25 OA9 81 OA9 H8A H26 H 0 1 N N N -70.961 25.078 -9.196 -4.969 3.368 -1.278 H26 OA9 82 OA9 H2A H27 H 0 1 N N N -66.404 25.204 -4.654 -8.900 6.437 2.908 H27 OA9 83 OA9 H2B H28 H 0 1 N N N -71.553 27.288 -8.785 -7.989 2.345 -1.445 H28 OA9 84 OA9 H3B H29 H 0 1 N N N -71.691 29.665 -8.677 -8.208 0.008 -1.529 H29 OA9 85 OA9 HN4 H30 H 0 1 N N N -77.929 25.851 2.577 8.091 -0.571 1.497 H30 OA9 86 OA9 H7 H31 H 0 1 N N N -75.916 25.134 -1.669 4.350 -3.602 2.448 H31 OA9 87 OA9 H8 H32 H 0 1 N N N -67.898 21.237 -5.433 -5.191 8.123 -0.448 H32 OA9 88 OA9 H62A H33 H 0 1 N N N -69.453 21.475 -5.873 -6.085 9.139 0.547 H33 OA9 89 OA9 H34 H34 H 0 1 N N N -71.526 25.525 10.185 16.311 6.226 0.083 H34 OA9 90 OA9 HO1 H35 H 0 1 N N N -74.093 27.559 -2.998 1.674 -6.812 0.936 H35 OA9 91 OA9 HOA5 H36 H 0 1 N N N -73.674 32.286 -1.115 0.480 -1.729 -1.804 H36 OA9 92 OA9 HOA2 H37 H 0 1 N N N -75.046 28.890 -5.244 -2.685 -0.135 -2.759 H37 OA9 93 OA9 HO2A H38 H 0 1 N N N -70.174 26.431 -10.388 -9.490 3.270 0.167 H38 OA9 94 OA9 HOA8 H39 H 0 1 N N N -71.199 29.525 -12.112 -11.547 -2.469 1.051 H39 OA9 95 OA9 HOA9 H40 H 0 1 N N N -70.270 32.753 -10.212 -11.587 0.242 -0.568 H40 OA9 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OA9 O7A P3B DOUB N N 1 OA9 O8A P3B SING N N 2 OA9 P3B O9A SING N N 3 OA9 P3B O3B SING N N 4 OA9 O2B C2B SING N N 5 OA9 O3B C3B SING N N 6 OA9 C2B C3B SING N N 7 OA9 C2B C1B SING N N 8 OA9 C3B C4B SING N N 9 OA9 C8A N7A DOUB Y N 10 OA9 C8A N9A SING Y N 11 OA9 C1B N9A SING N N 12 OA9 C1B O4B SING N N 13 OA9 N7A C5A SING Y N 14 OA9 N9A C4A SING Y N 15 OA9 C4B O4B SING N N 16 OA9 C4B C5B SING N N 17 OA9 C5A C4A DOUB Y N 18 OA9 C5A C6A SING Y N 19 OA9 C4A N3A SING Y N 20 OA9 O5B C5B SING N N 21 OA9 O5B P1A SING N N 22 OA9 O1A P1A DOUB N N 23 OA9 C6A N6A SING N N 24 OA9 C6A N1A DOUB Y N 25 OA9 N3A C2A DOUB Y N 26 OA9 P1A O2A SING N N 27 OA9 P1A O3A SING N N 28 OA9 C2A N1A SING Y N 29 OA9 O3A P2A SING N N 30 OA9 OAP CAP SING N N 31 OA9 P2A O4A DOUB N N 32 OA9 P2A O6A SING N N 33 OA9 P2A O5A SING N N 34 OA9 O6A CCP SING N N 35 OA9 CAP C9P SING N N 36 OA9 CAP CBP SING N N 37 OA9 N8P C9P SING N N 38 OA9 N8P C7P SING N N 39 OA9 C9P O9P DOUB N N 40 OA9 C7P C6P SING N N 41 OA9 CCP CBP SING N N 42 OA9 CDP CBP SING N N 43 OA9 CBP CEP SING N N 44 OA9 C6P C5P SING N N 45 OA9 O5P C5P DOUB N N 46 OA9 C5P N4P SING N N 47 OA9 N4P C3P SING N N 48 OA9 C2P C3P SING N N 49 OA9 C2P S1P SING N N 50 OA9 S1P C07 SING N N 51 OA9 C07 O08 DOUB N N 52 OA9 C07 C02 SING N N 53 OA9 C02 C03 DOUB N E 54 OA9 C02 C01 SING N N 55 OA9 C03 C04 SING N N 56 OA9 O06 C04 DOUB N N 57 OA9 C04 O05 SING N N 58 OA9 C01 H1 SING N N 59 OA9 C01 H2 SING N N 60 OA9 C01 H3 SING N N 61 OA9 C03 H4 SING N N 62 OA9 C2P H122 SING N N 63 OA9 C2P H51A SING N N 64 OA9 C3P HN8 SING N N 65 OA9 C3P H61A SING N N 66 OA9 C6P H61 SING N N 67 OA9 C6P H62 SING N N 68 OA9 C7P H71 SING N N 69 OA9 C7P H72 SING N N 70 OA9 CAP H10 SING N N 71 OA9 CDP H131 SING N N 72 OA9 CDP H132 SING N N 73 OA9 CDP H133 SING N N 74 OA9 CEP H141 SING N N 75 OA9 CEP H142 SING N N 76 OA9 CEP H143 SING N N 77 OA9 CCP H121 SING N N 78 OA9 CCP H5 SING N N 79 OA9 C5B H6 SING N N 80 OA9 C5B H52A SING N N 81 OA9 C4B H4B SING N N 82 OA9 C1B H1B SING N N 83 OA9 C8A H8A SING N N 84 OA9 C2A H2A SING N N 85 OA9 C2B H2B SING N N 86 OA9 C3B H3B SING N N 87 OA9 N4P HN4 SING N N 88 OA9 N8P H7 SING N N 89 OA9 N6A H8 SING N N 90 OA9 N6A H62A SING N N 91 OA9 O05 H34 SING N N 92 OA9 OAP HO1 SING N N 93 OA9 O5A HOA5 SING N N 94 OA9 O2A HOA2 SING N N 95 OA9 O2B HO2A SING N N 96 OA9 O8A HOA8 SING N N 97 OA9 O9A HOA9 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OA9 InChI InChI 1.06 "InChI=1S/C26H40N7O19P3S/c1-13(8-16(35)36)25(40)56-7-6-28-15(34)4-5-29-23(39)20(38)26(2,3)10-49-55(46,47)52-54(44,45)48-9-14-19(51-53(41,42)43)18(37)24(50-14)33-12-32-17-21(27)30-11-31-22(17)33/h8,11-12,14,18-20,24,37-38H,4-7,9-10H2,1-3H3,(H,28,34)(H,29,39)(H,35,36)(H,44,45)(H,46,47)(H2,27,30,31)(H2,41,42,43)/b13-8+/t14-,18-,19-,20+,24-/m1/s1" OA9 InChIKey InChI 1.06 LVBVWNJPMXCQJE-CBBDEUQJSA-N OA9 SMILES_CANONICAL CACTVS 3.385 "C\C(=C/C(O)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" OA9 SMILES CACTVS 3.385 "CC(=CC(O)=O)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" OA9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C/C(=C\C(=O)O)/C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" OA9 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(=CC(=O)O)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id OA9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(~{E})-4-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-methyl-4-oxidanylidene-but-2-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OA9 "Create component" 2022-09-01 PDBE OA9 "Initial release" 2023-01-11 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 OA9 "(~{E})-4-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-methyl-4-oxidanylidene-but-2-enoic acid" PDB ? 2 OA9 Mesaconyl-CoA AUTHOR ? 3 OA9 2-methylfumaroyl-CoA AUTHOR ? #