data_ODB # _chem_comp.id ODB _chem_comp.name "(10S,14S,17R)-14-(3-carbamimidamidopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-tris(oxidanylidene)-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.0^{6,10}]pentacosa-1(21),22,24-triene-17-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H46 N8 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "P2 macrocycle; (10S,14S,17R)-14-(3-guanidinopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-trioxo-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.06,10]pentacosa-1(25),21,23-triene-17-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-27 _chem_comp.pdbx_modified_date 2021-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.834 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ODB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GWE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ODB O2 O1 O 0 1 N N N 34.397 58.428 18.157 -0.653 -1.221 0.920 O2 ODB 1 ODB C8 C1 C 0 1 N N S 31.828 56.338 16.367 0.897 -3.559 0.977 C8 ODB 2 ODB C7 C2 C 0 1 N N N 32.473 54.914 16.195 1.350 -2.717 -0.219 C7 ODB 3 ODB C6 C3 C 0 1 N N N 33.951 54.863 15.549 1.897 -1.401 0.271 C6 ODB 4 ODB N1 N1 N 0 1 N N N 36.114 48.167 16.837 10.019 -2.055 0.602 N1 ODB 5 ODB C5 C4 C 0 1 N N S 36.333 54.426 16.106 3.225 0.594 -0.004 C5 ODB 6 ODB C4 C5 C 0 1 N N N 36.441 53.577 14.923 4.671 0.810 -0.455 C4 ODB 7 ODB C3 C6 C 0 1 N N N 36.079 52.233 15.621 5.565 -0.265 0.166 C3 ODB 8 ODB C2 C7 C 0 1 N N N 36.487 51.076 14.716 7.011 -0.049 -0.285 C2 ODB 9 ODB O1 O2 O 0 1 N N N 34.204 55.018 14.453 1.605 -0.985 1.372 O1 ODB 10 ODB S1 S1 S 0 1 N N N 38.260 57.099 18.775 -1.674 4.034 0.388 S1 ODB 11 ODB C1 C8 C 0 1 N N N 35.764 49.136 16.167 9.216 -1.089 0.045 C1 ODB 12 ODB C10 C9 C 0 1 N N N 31.966 57.999 14.811 -0.120 -5.792 0.882 C10 ODB 13 ODB C11 C10 C 0 1 N N N 33.276 57.979 15.566 -1.131 -4.750 1.378 C11 ODB 14 ODB C12 C11 C 0 1 N N N 33.692 57.540 17.942 -1.237 -2.265 1.122 C12 ODB 15 ODB C13 C12 C 0 1 N N N 32.775 56.951 19.115 -2.728 -2.265 1.336 C13 ODB 16 ODB C14 C13 C 0 1 N N N 32.910 56.285 21.428 -4.621 -1.129 0.341 C14 ODB 17 ODB C15 C14 C 0 1 Y N N 31.887 57.366 21.777 -4.523 -1.942 -0.925 C15 ODB 18 ODB C16 C15 C 0 1 Y N N 30.555 57.004 21.829 -4.951 -3.256 -0.938 C16 ODB 19 ODB C17 C16 C 0 1 Y N N 29.606 57.940 22.146 -4.862 -4.001 -2.099 C17 ODB 20 ODB C18 C17 C 0 1 Y N N 29.977 59.245 22.419 -4.344 -3.431 -3.247 C18 ODB 21 ODB C19 C18 C 0 1 Y N N 31.310 59.607 22.364 -3.916 -2.117 -3.234 C19 ODB 22 ODB C20 C19 C 0 1 Y N N 32.270 58.681 22.036 -4.010 -1.370 -2.075 C20 ODB 23 ODB C21 C20 C 0 1 N N N 33.776 59.155 22.030 -3.549 0.064 -2.063 C21 ODB 24 ODB C22 C21 C 0 1 N N N 34.940 55.867 20.006 -3.309 -0.026 2.051 C22 ODB 25 ODB C23 C22 C 0 1 Y N N 35.962 56.186 21.203 -4.180 1.152 1.699 C23 ODB 26 ODB C24 C23 C 0 1 Y N N 35.850 55.486 22.394 -5.553 1.061 1.827 C24 ODB 27 ODB C25 C24 C 0 1 Y N N 36.707 55.743 23.450 -6.352 2.142 1.504 C25 ODB 28 ODB C26 C25 C 0 1 Y N N 37.681 56.720 23.309 -5.776 3.315 1.051 C26 ODB 29 ODB C27 C26 C 0 1 Y N N 37.788 57.429 22.135 -4.403 3.407 0.922 C27 ODB 30 ODB C28 C27 C 0 1 Y N N 36.925 57.170 21.080 -3.605 2.325 1.246 C28 ODB 31 ODB C29 C28 C 0 1 N N N 37.074 58.002 19.732 -2.108 2.425 1.106 C29 ODB 32 ODB C30 C29 C 0 1 N N N 38.640 57.891 17.125 0.065 4.237 0.861 C30 ODB 33 ODB C31 C30 C 0 1 N N R 37.266 58.137 16.435 0.962 3.645 -0.228 C31 ODB 34 ODB C32 C31 C 0 1 N N N 37.439 58.720 15.040 1.855 4.721 -0.790 C32 ODB 35 ODB C33 C32 C 0 1 N N N 37.173 55.734 15.972 2.359 1.712 -0.524 C33 ODB 36 ODB C9 C33 C 0 1 N N N 31.248 56.691 15.298 1.207 -5.037 0.719 C9 ODB 37 ODB N2 N2 N 0 1 N N N 34.409 49.430 15.881 9.733 -0.181 -0.735 N2 ODB 38 ODB N3 N3 N 0 1 N N N 36.821 49.939 15.580 7.867 -1.079 0.309 N3 ODB 39 ODB N4 N4 N 0 1 N N N 34.955 54.534 16.575 2.724 -0.687 -0.542 N4 ODB 40 ODB N5 N5 N 0 1 N N N 32.936 57.465 16.681 -0.551 -3.425 1.156 N5 ODB 41 ODB N6 N6 N 0 1 N N N 33.682 56.800 20.308 -3.283 -0.968 0.924 N6 ODB 42 ODB N7 N7 N 0 1 N N N 37.688 60.122 14.934 1.380 5.573 -1.720 N7 ODB 43 ODB N8 N8 N 0 1 N N N 36.488 56.936 16.494 1.792 2.574 0.375 N8 ODB 44 ODB O3 O3 O 0 1 N N N 34.259 59.390 20.792 -3.168 0.453 -3.384 O3 ODB 45 ODB O4 O4 O 0 1 N N N 37.356 58.049 14.087 3.000 4.821 -0.405 O4 ODB 46 ODB O5 O5 O 0 1 N N N 38.252 55.720 15.549 2.168 1.845 -1.714 O5 ODB 47 ODB H1 H1 H 0 1 N N N 31.142 56.299 17.226 1.412 -3.223 1.878 H1 ODB 48 ODB H2 H2 H 0 1 N N N 31.807 54.322 15.551 2.126 -3.253 -0.766 H2 ODB 49 ODB H3 H3 H 0 1 N N N 32.528 54.450 17.191 0.500 -2.535 -0.877 H3 ODB 50 ODB H4 H4 H 0 1 N N N 35.428 47.542 17.209 10.971 -2.061 0.416 H4 ODB 51 ODB H5 H5 H 0 1 N N N 37.085 48.004 17.010 9.634 -2.730 1.182 H5 ODB 52 ODB H6 H6 H 0 1 N N N 36.852 53.865 16.897 3.181 0.575 1.086 H6 ODB 53 ODB H7 H7 H 0 1 N N N 37.456 53.572 14.500 4.726 0.746 -1.541 H7 ODB 54 ODB H8 H8 H 0 1 N N N 35.719 53.852 14.140 5.009 1.795 -0.132 H8 ODB 55 ODB H9 H9 H 0 1 N N N 34.995 52.193 15.804 5.510 -0.201 1.253 H9 ODB 56 ODB H10 H10 H 0 1 N N N 36.616 52.159 16.578 5.227 -1.250 -0.157 H10 ODB 57 ODB H11 H11 H 0 1 N N N 37.363 51.360 14.114 7.066 -0.114 -1.372 H11 ODB 58 ODB H12 H12 H 0 1 N N N 35.654 50.809 14.049 7.349 0.935 0.038 H12 ODB 59 ODB H13 H13 H 0 1 N N N 32.137 57.973 13.725 -0.011 -6.590 1.617 H13 ODB 60 ODB H14 H14 H 0 1 N N N 31.376 58.891 15.069 -0.440 -6.202 -0.076 H14 ODB 61 ODB H15 H15 H 0 1 N N N 34.023 57.357 15.052 -2.062 -4.844 0.820 H15 ODB 62 ODB H16 H16 H 0 1 N N N 33.674 58.995 15.700 -1.321 -4.897 2.441 H16 ODB 63 ODB H17 H17 H 0 1 N N N 31.953 57.645 19.344 -3.180 -3.059 0.741 H17 ODB 64 ODB H18 H18 H 0 1 N N N 32.360 55.975 18.823 -2.944 -2.434 2.391 H18 ODB 65 ODB H19 H19 H 0 1 N N N 32.398 55.354 21.142 -5.038 -0.149 0.112 H19 ODB 66 ODB H20 H20 H 0 1 N N N 33.568 56.092 22.288 -5.268 -1.642 1.052 H20 ODB 67 ODB H21 H21 H 0 1 N N N 30.262 55.986 21.620 -5.356 -3.701 -0.040 H21 ODB 68 ODB H22 H22 H 0 1 N N N 28.564 57.658 22.183 -5.195 -5.028 -2.109 H22 ODB 69 ODB H23 H23 H 0 1 N N N 29.227 59.979 22.674 -4.273 -4.014 -4.154 H23 ODB 70 ODB H24 H24 H 0 1 N N N 31.599 60.625 22.580 -3.511 -1.672 -4.131 H24 ODB 71 ODB H25 H25 H 0 1 N N N 34.390 58.373 22.501 -4.361 0.704 -1.715 H25 ODB 72 ODB H26 H26 H 0 1 N N N 33.852 60.083 22.616 -2.695 0.166 -1.393 H26 ODB 73 ODB H27 H27 H 0 1 N N N 34.650 54.806 20.013 -2.297 0.320 2.259 H27 ODB 74 ODB H28 H28 H 0 1 N N N 35.388 56.118 19.033 -3.712 -0.525 2.932 H28 ODB 75 ODB H29 H29 H 0 1 N N N 35.085 54.731 22.499 -6.002 0.144 2.181 H29 ODB 76 ODB H30 H30 H 0 1 N N N 36.618 55.189 24.373 -7.424 2.070 1.605 H30 ODB 77 ODB H31 H31 H 0 1 N N N 38.359 56.925 24.125 -6.400 4.159 0.798 H31 ODB 78 ODB H32 H32 H 0 1 N N N 38.547 58.191 22.034 -3.954 4.323 0.568 H32 ODB 79 ODB H33 H33 H 0 1 N N N 37.438 59.019 19.942 -1.750 1.628 0.454 H33 ODB 80 ODB H34 H34 H 0 1 N N N 36.111 58.059 19.203 -1.644 2.329 2.087 H34 ODB 81 ODB H35 H35 H 0 1 N N N 39.259 57.219 16.513 0.288 5.298 0.978 H35 ODB 82 ODB H36 H36 H 0 1 N N N 39.169 58.844 17.272 0.248 3.721 1.803 H36 ODB 83 ODB H37 H37 H 0 1 N N N 36.751 58.901 17.036 0.345 3.226 -1.023 H37 ODB 84 ODB H38 H38 H 0 1 N N N 30.184 56.891 15.492 1.591 -5.168 -0.292 H38 ODB 85 ODB H39 H39 H 0 1 N N N 31.340 55.902 14.537 1.936 -5.398 1.445 H39 ODB 86 ODB H40 H40 H 0 1 N N N 33.787 48.761 16.287 10.685 -0.187 -0.921 H40 ODB 87 ODB H42 H42 H 0 1 N N N 37.778 49.717 15.765 7.482 -1.755 0.889 H42 ODB 88 ODB H43 H43 H 0 1 N N N 34.708 54.393 17.534 2.971 -1.002 -1.426 H43 ODB 89 ODB H45 H45 H 0 1 N N N 37.794 60.544 14.034 0.463 5.494 -2.028 H45 ODB 90 ODB H46 H46 H 0 1 N N N 37.756 60.682 15.760 1.954 6.266 -2.081 H46 ODB 91 ODB H47 H47 H 0 1 N N N 35.557 56.912 16.859 1.923 2.492 1.333 H47 ODB 92 ODB H48 H48 H 0 1 N N N 33.992 58.689 20.209 -2.860 1.367 -3.451 H48 ODB 93 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ODB O4 C32 DOUB N N 1 ODB O1 C6 DOUB N N 2 ODB C2 N3 SING N N 3 ODB C2 C3 SING N N 4 ODB C10 C9 SING N N 5 ODB C10 C11 SING N N 6 ODB C4 C3 SING N N 7 ODB C4 C5 SING N N 8 ODB N7 C32 SING N N 9 ODB C32 C31 SING N N 10 ODB C9 C8 SING N N 11 ODB C6 C7 SING N N 12 ODB C6 N4 SING N N 13 ODB O5 C33 DOUB N N 14 ODB C11 N5 SING N N 15 ODB N3 C1 SING N N 16 ODB N2 C1 DOUB N N 17 ODB C33 C5 SING N N 18 ODB C33 N8 SING N N 19 ODB C5 N4 SING N N 20 ODB C1 N1 SING N N 21 ODB C7 C8 SING N N 22 ODB C8 N5 SING N N 23 ODB C31 N8 SING N N 24 ODB C31 C30 SING N N 25 ODB N5 C12 SING N N 26 ODB C30 S1 SING N N 27 ODB C12 O2 DOUB N N 28 ODB C12 C13 SING N N 29 ODB S1 C29 SING N N 30 ODB C13 N6 SING N N 31 ODB C29 C28 SING N N 32 ODB C22 N6 SING N N 33 ODB C22 C23 SING N N 34 ODB N6 C14 SING N N 35 ODB O3 C21 SING N N 36 ODB C28 C23 DOUB Y N 37 ODB C28 C27 SING Y N 38 ODB C23 C24 SING Y N 39 ODB C14 C15 SING N N 40 ODB C15 C16 DOUB Y N 41 ODB C15 C20 SING Y N 42 ODB C16 C17 SING Y N 43 ODB C21 C20 SING N N 44 ODB C20 C19 DOUB Y N 45 ODB C27 C26 DOUB Y N 46 ODB C17 C18 DOUB Y N 47 ODB C19 C18 SING Y N 48 ODB C24 C25 DOUB Y N 49 ODB C26 C25 SING Y N 50 ODB C8 H1 SING N N 51 ODB C7 H2 SING N N 52 ODB C7 H3 SING N N 53 ODB N1 H4 SING N N 54 ODB N1 H5 SING N N 55 ODB C5 H6 SING N N 56 ODB C4 H7 SING N N 57 ODB C4 H8 SING N N 58 ODB C3 H9 SING N N 59 ODB C3 H10 SING N N 60 ODB C2 H11 SING N N 61 ODB C2 H12 SING N N 62 ODB C10 H13 SING N N 63 ODB C10 H14 SING N N 64 ODB C11 H15 SING N N 65 ODB C11 H16 SING N N 66 ODB C13 H17 SING N N 67 ODB C13 H18 SING N N 68 ODB C14 H19 SING N N 69 ODB C14 H20 SING N N 70 ODB C16 H21 SING N N 71 ODB C17 H22 SING N N 72 ODB C18 H23 SING N N 73 ODB C19 H24 SING N N 74 ODB C21 H25 SING N N 75 ODB C21 H26 SING N N 76 ODB C22 H27 SING N N 77 ODB C22 H28 SING N N 78 ODB C24 H29 SING N N 79 ODB C25 H30 SING N N 80 ODB C26 H31 SING N N 81 ODB C27 H32 SING N N 82 ODB C29 H33 SING N N 83 ODB C29 H34 SING N N 84 ODB C30 H35 SING N N 85 ODB C30 H36 SING N N 86 ODB C31 H37 SING N N 87 ODB C9 H38 SING N N 88 ODB C9 H39 SING N N 89 ODB N2 H40 SING N N 90 ODB N3 H42 SING N N 91 ODB N4 H43 SING N N 92 ODB N7 H45 SING N N 93 ODB N7 H46 SING N N 94 ODB N8 H47 SING N N 95 ODB O3 H48 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ODB InChI InChI 1.03 "InChI=1S/C33H46N8O5S/c34-31(45)28-21-47-20-25-10-4-2-8-23(25)17-40(16-22-7-1-3-9-24(22)19-42)18-30(44)41-14-6-11-26(41)15-29(43)38-27(32(46)39-28)12-5-13-37-33(35)36/h1-4,7-10,26-28,42H,5-6,11-21H2,(H2,34,45)(H,38,43)(H,39,46)(H4,35,36,37)/t26-,27-,28-/m0/s1" ODB InChIKey InChI 1.03 IXLKCOMKHVAIOV-KCHLEUMXSA-N ODB SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCC[C@@H]1NC(=O)C[C@@H]2CCCN2C(=O)CN(Cc3ccccc3CO)Cc4ccccc4CSC[C@H](NC1=O)C(N)=O" ODB SMILES CACTVS 3.385 "NC(=N)NCCC[CH]1NC(=O)C[CH]2CCCN2C(=O)CN(Cc3ccccc3CO)Cc4ccccc4CSC[CH](NC1=O)C(N)=O" ODB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@H]1C(=O)N[C@@H](CSCc2ccccc2CN(CC(=O)N3CCC[C@H]3CC(=O)N1)Cc4ccccc4CO)C(=O)N" ODB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CN(CC(=O)N3CCCC3CC(=O)NC(C(=O)NC(CSC2)C(=O)N)CCCNC(=N)N)Cc4ccccc4CO" # _pdbx_chem_comp_identifier.comp_id ODB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(10~{S},14~{S},17~{R})-14-(3-carbamimidamidopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-tris(oxidanylidene)-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.0^{6,10}]pentacosa-1(21),22,24-triene-17-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ODB "Create component" 2020-02-27 PDBE ODB "Initial release" 2020-03-18 RCSB ODB "Modify synonyms" 2021-08-28 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 ODB "P2 macrocycle" AUTHOR ? 2 ODB "(10S,14S,17R)-14-(3-guanidinopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-trioxo-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.06,10]pentacosa-1(25),21,23-triene-17-carboxamide" PDB ? ##