data_OI9 # _chem_comp.id OI9 _chem_comp.name "Streptothricin F" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H34 N8 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-03 _chem_comp.pdbx_modified_date 2023-04-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OI9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UVX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OI9 N10 N1 N 0 1 N N N 248.045 185.637 179.746 1.371 1.927 1.419 N10 OI9 1 OI9 C17 C1 C 0 1 N N R 244.715 186.909 182.778 -1.574 -1.365 -0.489 C17 OI9 2 OI9 C18 C2 C 0 1 N N S 244.268 187.576 184.089 -2.764 -1.659 -1.409 C18 OI9 3 OI9 C19 C3 C 0 1 N N R 246.244 186.785 182.729 -1.512 0.139 -0.213 C19 OI9 4 OI9 C20 C4 C 0 1 N N R 244.965 186.952 185.306 -4.044 -1.134 -0.752 C20 OI9 5 OI9 C21 C5 C 0 1 N N R 246.477 186.790 185.074 -3.886 0.361 -0.466 C21 OI9 6 OI9 C22 C6 C 0 1 N N S 249.318 186.048 179.227 2.181 2.830 0.614 C22 OI9 7 OI9 C23 C7 C 0 1 N N S 249.820 187.016 180.293 1.044 3.560 -0.172 C23 OI9 8 OI9 C24 C8 C 0 1 N N R 250.479 185.184 178.829 2.983 3.910 1.296 C24 OI9 9 OI9 C25 C9 C 0 1 N N N 247.808 186.354 180.903 0.313 1.583 0.585 C25 OI9 10 OI9 C26 C10 C 0 1 N N N 247.172 186.037 186.201 -5.138 0.880 0.245 C26 OI9 11 OI9 C27 C11 C 0 1 N N N 251.436 186.209 178.170 3.375 4.973 0.267 C27 OI9 12 OI9 C28 C12 C 0 1 N N N 250.410 188.155 179.533 1.747 4.097 -1.384 C28 OI9 13 OI9 C29 C13 C 0 1 N N N 243.475 187.036 180.624 0.742 -2.117 -0.393 C29 OI9 14 OI9 C30 C14 C 0 1 N N N 243.121 188.015 179.517 2.017 -2.561 -1.062 C30 OI9 15 OI9 C31 C15 C 0 1 N N S 243.832 187.673 178.196 3.074 -2.861 0.003 C31 OI9 16 OI9 C32 C16 C 0 1 N N N 243.041 185.659 185.786 -5.558 -1.998 0.879 C32 OI9 17 OI9 C33 C17 C 0 1 N N N 243.580 188.729 177.100 4.404 -3.191 -0.677 C33 OI9 18 OI9 C34 C18 C 0 1 N N N 244.018 188.310 175.688 5.490 -3.368 0.386 C34 OI9 19 OI9 C35 C19 C 0 1 N N N 244.224 189.485 174.734 6.820 -3.699 -0.295 C35 OI9 20 OI9 N09 N2 N 0 1 N N N 246.633 186.119 181.508 -0.411 0.421 0.712 N09 OI9 21 OI9 N11 N3 N 0 1 N N N 244.236 187.627 181.619 -0.335 -1.797 -1.139 N11 OI9 22 OI9 N12 N4 N 0 1 N N N 248.749 187.198 181.316 0.085 2.486 -0.340 N12 OI9 23 OI9 N13 N5 N 0 1 N N N 251.201 187.646 178.494 2.936 4.702 -1.093 N13 OI9 24 OI9 N14 N6 N 0 1 N N N 243.365 186.364 177.732 2.640 -4.006 0.814 N14 OI9 25 OI9 N15 N7 N 0 1 N N N 242.443 184.701 185.005 -5.843 -2.648 2.025 N15 OI9 26 OI9 N16 N8 N 0 1 N N N 244.503 189.002 173.387 7.863 -3.869 0.726 N16 OI9 27 OI9 O01 O1 O 0 1 N N N 246.713 186.063 183.866 -2.744 0.567 0.369 O01 OI9 28 OI9 O02 O2 O 0 1 N N N 244.392 185.676 185.576 -4.277 -1.844 0.493 O02 OI9 29 OI9 O03 O3 O 0 1 N N N 244.591 188.964 184.041 -2.569 -1.006 -2.665 O03 OI9 30 OI9 O04 O4 O 0 1 N N N 251.134 184.600 179.949 2.195 4.510 2.326 O04 OI9 31 OI9 O05 O5 O 0 1 N N N 248.485 185.712 185.780 -5.041 2.297 0.407 O05 OI9 32 OI9 O06 O6 O 0 1 N N N 250.231 189.343 179.783 1.304 4.003 -2.509 O06 OI9 33 OI9 O07 O7 O 0 1 N N N 243.123 185.861 180.617 0.684 -2.046 0.816 O07 OI9 34 OI9 O08 O8 O 0 1 N N N 242.440 186.393 186.560 -6.457 -1.551 0.194 O08 OI9 35 OI9 H1 H1 H 0 1 N N N 247.437 184.953 179.342 1.535 1.630 2.328 H1 OI9 36 OI9 H2 H2 H 0 1 N N N 244.297 185.892 182.762 -1.699 -1.903 0.451 H2 OI9 37 OI9 H3 H3 H 0 1 N N N 243.182 187.443 184.199 -2.848 -2.734 -1.564 H3 OI9 38 OI9 H4 H4 H 0 1 N N N 246.668 187.800 182.739 -1.346 0.674 -1.149 H4 OI9 39 OI9 H5 H5 H 0 1 N N N 244.817 187.618 186.169 -4.889 -1.290 -1.424 H5 OI9 40 OI9 H6 H6 H 0 1 N N N 246.924 187.792 184.997 -3.752 0.899 -1.405 H6 OI9 41 OI9 H7 H7 H 0 1 N N N 249.103 186.673 178.348 2.809 2.262 -0.072 H7 OI9 42 OI9 H8 H8 H 0 1 N N N 250.655 186.510 180.799 0.616 4.365 0.426 H8 OI9 43 OI9 H9 H9 H 0 1 N N N 250.169 184.428 178.093 3.882 3.475 1.732 H9 OI9 44 OI9 H10 H10 H 0 1 N N N 247.216 186.671 187.099 -6.019 0.643 -0.352 H10 OI9 45 OI9 H11 H11 H 0 1 N N N 246.617 185.115 186.430 -5.223 0.407 1.223 H11 OI9 46 OI9 H12 H12 H 0 1 N N N 251.349 186.094 177.080 2.952 5.928 0.580 H12 OI9 47 OI9 H13 H13 H 0 1 N N N 243.419 189.027 179.829 1.826 -3.461 -1.648 H13 OI9 48 OI9 H14 H14 H 0 1 N N N 242.034 187.987 179.353 2.377 -1.770 -1.719 H14 OI9 49 OI9 H15 H15 H 0 1 N N N 244.914 187.626 178.388 3.200 -1.989 0.644 H15 OI9 50 OI9 H16 H16 H 0 1 N N N 244.130 189.642 177.372 4.300 -4.114 -1.248 H16 OI9 51 OI9 H17 H17 H 0 1 N N N 242.502 188.944 177.074 4.681 -2.378 -1.348 H17 OI9 52 OI9 H18 H18 H 0 1 N N N 243.245 187.652 175.266 5.593 -2.446 0.957 H18 OI9 53 OI9 H19 H19 H 0 1 N N N 244.966 187.758 175.768 5.213 -4.182 1.056 H19 OI9 54 OI9 H20 H20 H 0 1 N N N 245.072 190.092 175.084 6.717 -4.621 -0.866 H20 OI9 55 OI9 H21 H21 H 0 1 N N N 243.313 190.102 174.717 7.097 -2.885 -0.965 H21 OI9 56 OI9 H22 H22 H 0 1 N N N 246.004 185.458 181.098 -0.193 -0.213 1.414 H22 OI9 57 OI9 H23 H23 H 0 1 N N N 244.465 188.597 181.531 -0.289 -1.854 -2.106 H23 OI9 58 OI9 H24 H24 H 0 1 N N N 243.529 185.680 178.443 1.797 -3.790 1.324 H24 OI9 59 OI9 H25 H25 H 0 1 N N N 242.386 186.411 177.533 2.516 -4.828 0.242 H25 OI9 60 OI9 H27 H27 H 0 1 N N N 241.453 184.568 185.047 -6.766 -2.758 2.303 H27 OI9 61 OI9 H28 H28 H 0 1 N N N 242.998 184.136 184.394 -5.126 -3.004 2.571 H28 OI9 62 OI9 H29 H29 H 0 1 N N N 244.636 189.781 172.774 8.752 -4.088 0.302 H29 OI9 63 OI9 H30 H30 H 0 1 N N N 245.332 188.442 173.399 7.933 -3.050 1.311 H30 OI9 64 OI9 H32 H32 H 0 1 N N N 244.317 189.382 184.849 -3.286 -1.149 -3.298 H32 OI9 65 OI9 H33 H33 H 0 1 N N N 250.556 183.969 180.361 2.649 5.215 2.808 H33 OI9 66 OI9 H34 H34 H 0 1 N N N 248.933 185.241 186.473 -5.802 2.695 0.852 H34 OI9 67 OI9 H26 H26 H 0 1 N N N 252.460 185.959 178.484 4.460 5.067 0.266 H26 OI9 68 OI9 H31 H31 H 0 1 N N N 251.656 188.317 177.908 3.515 4.962 -1.826 H31 OI9 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OI9 N16 C35 SING N N 1 OI9 C35 C34 SING N N 2 OI9 C34 C33 SING N N 3 OI9 C33 C31 SING N N 4 OI9 N14 C31 SING N N 5 OI9 C27 N13 SING N N 6 OI9 C27 C24 SING N N 7 OI9 C31 C30 SING N N 8 OI9 N13 C28 SING N N 9 OI9 C24 C22 SING N N 10 OI9 C24 O04 SING N N 11 OI9 C22 N10 SING N N 12 OI9 C22 C23 SING N N 13 OI9 C30 C29 SING N N 14 OI9 C28 O06 DOUB N N 15 OI9 C28 C23 SING N N 16 OI9 N10 C25 SING N N 17 OI9 C23 N12 SING N N 18 OI9 O07 C29 DOUB N N 19 OI9 C29 N11 SING N N 20 OI9 C25 N12 DOUB N N 21 OI9 C25 N09 SING N N 22 OI9 N09 C19 SING N N 23 OI9 N11 C17 SING N N 24 OI9 C19 C17 SING N N 25 OI9 C19 O01 SING N N 26 OI9 C17 C18 SING N N 27 OI9 O01 C21 SING N N 28 OI9 O03 C18 SING N N 29 OI9 C18 C20 SING N N 30 OI9 N15 C32 SING N N 31 OI9 C21 C20 SING N N 32 OI9 C21 C26 SING N N 33 OI9 C20 O02 SING N N 34 OI9 O02 C32 SING N N 35 OI9 O05 C26 SING N N 36 OI9 C32 O08 DOUB N N 37 OI9 N10 H1 SING N N 38 OI9 C17 H2 SING N N 39 OI9 C18 H3 SING N N 40 OI9 C19 H4 SING N N 41 OI9 C20 H5 SING N N 42 OI9 C21 H6 SING N N 43 OI9 C22 H7 SING N N 44 OI9 C23 H8 SING N N 45 OI9 C24 H9 SING N N 46 OI9 C26 H10 SING N N 47 OI9 C26 H11 SING N N 48 OI9 C27 H12 SING N N 49 OI9 C30 H13 SING N N 50 OI9 C30 H14 SING N N 51 OI9 C31 H15 SING N N 52 OI9 C33 H16 SING N N 53 OI9 C33 H17 SING N N 54 OI9 C34 H18 SING N N 55 OI9 C34 H19 SING N N 56 OI9 C35 H20 SING N N 57 OI9 C35 H21 SING N N 58 OI9 N09 H22 SING N N 59 OI9 N11 H23 SING N N 60 OI9 N14 H24 SING N N 61 OI9 N14 H25 SING N N 62 OI9 N15 H27 SING N N 63 OI9 N15 H28 SING N N 64 OI9 N16 H29 SING N N 65 OI9 N16 H30 SING N N 66 OI9 O03 H32 SING N N 67 OI9 O04 H33 SING N N 68 OI9 O05 H34 SING N N 69 OI9 C27 H26 SING N N 70 OI9 N13 H31 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OI9 SMILES ACDLabs 12.01 "NCCCC(N)CC(=O)NC1C(O)C(OC(N)=O)C(CO)OC1NC=1NC2C(N=1)C(=O)NCC2O" OI9 InChI InChI 1.03 "InChI=1S/C19H34N8O8/c20-3-1-2-7(21)4-10(30)24-13-14(31)15(35-18(22)33)9(6-28)34-17(13)27-19-25-11-8(29)5-23-16(32)12(11)26-19/h7-9,11-15,17,28-29,31H,1-6,20-21H2,(H2,22,33)(H,23,32)(H,24,30)(H2,25,26,27)/t7-,8+,9+,11+,12-,13+,14-,15-,17+/m0/s1" OI9 InChIKey InChI 1.03 NRAUADCLPJTGSF-VLSXYIQESA-N OI9 SMILES_CANONICAL CACTVS 3.385 "NCCC[C@H](N)CC(=O)N[C@@H]1[C@H](O)[C@@H](OC(N)=O)[C@@H](CO)O[C@H]1NC2=N[C@H]3[C@H](N2)[C@H](O)CNC3=O" OI9 SMILES CACTVS 3.385 "NCCC[CH](N)CC(=O)N[CH]1[CH](O)[CH](OC(N)=O)[CH](CO)O[CH]1NC2=N[CH]3[CH](N2)[CH](O)CNC3=O" OI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]2[C@@H](C(=O)N1)N=C(N2)N[C@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)OC(=O)N)O)NC(=O)C[C@H](CCCN)N)O" OI9 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(=O)N1)N=C(N2)NC3C(C(C(C(O3)CO)OC(=O)N)O)NC(=O)CC(CCCN)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OI9 "SYSTEMATIC NAME" ACDLabs 12.01 "4-O-carbamoyl-2-deoxy-2-[(3S)-3,6-diaminohexanamido]-N-[(3aS,7R,7aS)-7-hydroxy-4-oxo-3a,4,5,6,7,7a-hexahydro-1H-imidazo[4,5-c]pyridin-2-yl]-beta-D-gulopyranosylamine" OI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-1,3~{a},5,6,7,7~{a}-hexahydroimidazo[4,5-c]pyridin-2-yl]amino]-5-[[(3~{S})-3,6-bis(azanyl)hexanoyl]amino]-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OI9 "Create component" 2022-05-03 RCSB OI9 "Initial release" 2023-04-19 RCSB #