data_OK2 # _chem_comp.id OK2 _chem_comp.name "(2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-(pyrazin-2-ylmethoxy)phenyl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H38 Cl F N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-17 _chem_comp.pdbx_modified_date 2020-11-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 769.283 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OK2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YBK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OK2 C1 C1 C 0 1 N N N -4.241 -5.306 8.252 9.224 4.045 0.167 C1 OK2 1 OK2 N1 N1 N 0 1 N N N -5.640 -5.632 8.526 7.829 4.331 -0.195 N1 OK2 2 OK2 C2 C2 C 0 1 N N N -5.793 -6.273 9.832 7.083 4.857 0.957 C2 OK2 3 OK2 C3 C3 C 0 1 N N N -7.235 -6.631 10.116 5.661 5.215 0.520 C3 OK2 4 OK2 N2 N2 N 0 1 N N N -7.741 -7.543 9.078 5.004 4.021 -0.028 N2 OK2 5 OK2 C4 C4 C 0 1 N N N -9.113 -7.988 9.360 3.609 4.306 -0.390 C4 OK2 6 OK2 C5 C5 C 0 1 N N N -9.502 -9.287 8.699 2.889 2.997 -0.719 C5 OK2 7 OK2 O1 O1 O 0 1 N N N -9.630 -9.066 7.290 2.817 2.186 0.455 O1 OK2 8 OK2 C6 C6 C 0 1 Y N N -9.939 -10.130 6.481 2.203 0.979 0.335 C6 OK2 9 OK2 C7 C7 C 0 1 Y N N -10.109 -9.841 5.133 2.093 0.144 1.439 C7 OK2 10 OK2 CL1 CL1 CL 0 0 N N N -9.929 -8.199 4.607 2.746 0.639 2.969 CL1 OK2 11 OK2 C8 C8 C 0 1 Y N N -10.414 -10.829 4.199 1.465 -1.079 1.321 C8 OK2 12 OK2 C9 C9 C 0 1 N N N -10.556 -10.457 2.742 1.346 -1.985 2.520 C9 OK2 13 OK2 C10 C10 C 0 1 Y N N -10.595 -12.146 4.644 0.940 -1.476 0.091 C10 OK2 14 OK2 C11 C11 C 0 1 Y N N -10.404 -12.443 5.990 1.053 -0.634 -1.016 C11 OK2 15 OK2 C12 C12 C 0 1 Y N N -10.094 -11.447 6.901 1.681 0.587 -0.891 C12 OK2 16 OK2 C13 C13 C 0 1 Y N N -10.886 -13.238 3.686 0.266 -2.787 -0.040 C13 OK2 17 OK2 C14 C14 C 0 1 Y N N -10.003 -13.648 2.727 0.924 -3.926 -0.373 C14 OK2 18 OK2 S1 S1 S 0 1 Y N N -10.628 -14.929 1.732 -0.174 -5.291 -0.439 S1 OK2 19 OK2 C15 C15 C 0 1 Y N N -12.080 -14.941 2.656 -1.558 -4.298 -0.005 C15 OK2 20 OK2 C16 C16 C 0 1 Y N N -12.122 -14.001 3.669 -1.160 -2.972 0.183 C16 OK2 21 OK2 C17 C17 C 0 1 Y N N -13.281 -13.958 4.442 -2.157 -2.031 0.539 C17 OK2 22 OK2 O2 O2 O 0 1 N N N -13.372 -13.078 5.476 -1.836 -0.730 0.735 O2 OK2 23 OK2 C18 C18 C 0 1 N N R -14.469 -13.265 6.391 -2.900 0.154 1.092 C18 OK2 24 OK2 C19 C19 C 0 1 N N N -14.365 -12.153 7.426 -2.595 1.558 0.565 C19 OK2 25 OK2 C20 C20 C 0 1 Y N N -14.508 -10.780 6.805 -2.582 1.537 -0.942 C20 OK2 26 OK2 C21 C21 C 0 1 Y N N -15.755 -10.303 6.377 -3.768 1.675 -1.648 C21 OK2 27 OK2 O3 O3 O 0 1 N N N -16.819 -11.151 6.563 -4.943 1.828 -0.982 O3 OK2 28 OK2 C22 C22 C 0 1 N N N -18.128 -10.646 6.341 -6.124 1.964 -1.775 C22 OK2 29 OK2 C23 C23 C 0 1 Y N N -19.080 -11.783 6.570 -7.319 2.123 -0.871 C23 OK2 30 OK2 N3 N3 N 0 1 Y N N -20.369 -11.570 6.272 -8.527 2.260 -1.390 N3 OK2 31 OK2 C24 C24 C 0 1 Y N N -21.232 -12.577 6.474 -9.575 2.399 -0.597 C24 OK2 32 OK2 C25 C25 C 0 1 Y N N -20.814 -13.787 6.998 -9.408 2.401 0.776 C25 OK2 33 OK2 N4 N4 N 0 1 Y N N -19.539 -14.016 7.304 -8.201 2.264 1.296 N4 OK2 34 OK2 C26 C26 C 0 1 Y N N -18.677 -13.016 7.083 -7.153 2.120 0.503 C26 OK2 35 OK2 C27 C27 C 0 1 Y N N -15.877 -9.061 5.765 -3.752 1.656 -3.035 C27 OK2 36 OK2 C28 C28 C 0 1 Y N N -14.756 -8.271 5.614 -2.557 1.500 -3.710 C28 OK2 37 OK2 C29 C29 C 0 1 Y N N -13.522 -8.713 6.040 -1.376 1.363 -3.003 C29 OK2 38 OK2 C30 C30 C 0 1 Y N N -13.395 -9.968 6.607 -1.388 1.387 -1.621 C30 OK2 39 OK2 C31 C31 C 0 1 N N N -14.458 -14.642 7.081 -3.034 0.199 2.592 C31 OK2 40 OK2 O4 O4 O 0 1 N N N -15.507 -15.004 7.653 -4.038 0.890 3.156 O4 OK2 41 OK2 O5 O5 O 0 1 N N N -13.436 -15.369 7.025 -2.239 -0.387 3.287 O5 OK2 42 OK2 N5 N5 N 0 1 Y N N -14.286 -14.772 4.207 -3.407 -2.442 0.677 N5 OK2 43 OK2 C32 C32 C 0 1 Y N N -14.162 -15.655 3.218 -3.735 -3.708 0.488 C32 OK2 44 OK2 N6 N6 N 0 1 Y N N -13.110 -15.755 2.410 -2.848 -4.618 0.162 N6 OK2 45 OK2 C33 C33 C 0 1 Y N N -8.615 -13.227 2.504 2.372 -4.005 -0.644 C33 OK2 46 OK2 C34 C34 C 0 1 Y N N -8.122 -13.071 1.213 3.150 -4.983 -0.020 C34 OK2 47 OK2 C35 C35 C 0 1 Y N N -6.808 -12.701 1.001 4.503 -5.052 -0.277 C35 OK2 48 OK2 C36 C36 C 0 1 Y N N -5.997 -12.501 2.091 5.091 -4.154 -1.153 C36 OK2 49 OK2 F1 F1 F 0 1 N N N -4.703 -12.125 1.882 6.418 -4.226 -1.401 F1 OK2 50 OK2 C37 C37 C 0 1 Y N N -6.432 -12.659 3.379 4.325 -3.181 -1.775 C37 OK2 51 OK2 C38 C38 C 0 1 Y N N -7.747 -13.032 3.578 2.970 -3.106 -1.530 C38 OK2 52 OK2 C39 C39 C 0 1 N N N -7.624 -6.856 7.782 5.750 3.495 -1.180 C39 OK2 53 OK2 C40 C40 C 0 1 N N N -6.185 -6.499 7.487 7.172 3.136 -0.743 C40 OK2 54 OK2 H1 H1 H 0 1 N N N -3.854 -4.653 9.048 9.248 3.305 0.966 H1 OK2 55 OK2 H2 H2 H 0 1 N N N -3.649 -6.232 8.217 9.753 3.658 -0.704 H2 OK2 56 OK2 H3 H3 H 0 1 N N N -4.168 -4.788 7.284 9.706 4.962 0.506 H3 OK2 57 OK2 H5 H5 H 0 1 N N N -5.188 -7.191 9.851 7.043 4.100 1.740 H5 OK2 58 OK2 H6 H6 H 0 1 N N N -5.437 -5.583 10.611 7.583 5.748 1.337 H6 OK2 59 OK2 H7 H7 H 0 1 N N N -7.843 -5.714 10.124 5.097 5.579 1.379 H7 OK2 60 OK2 H8 H8 H 0 1 N N N -7.302 -7.123 11.097 5.700 5.992 -0.244 H8 OK2 61 OK2 H10 H10 H 0 1 N N N -9.805 -7.206 9.013 3.110 4.796 0.446 H10 OK2 62 OK2 H11 H11 H 0 1 N N N -9.216 -8.113 10.448 3.587 4.962 -1.261 H11 OK2 63 OK2 H12 H12 H 0 1 N N N -10.462 -9.637 9.107 1.882 3.216 -1.072 H12 OK2 64 OK2 H13 H13 H 0 1 N N N -8.726 -10.044 8.886 3.439 2.465 -1.495 H13 OK2 65 OK2 H14 H14 H 0 1 N N N -11.601 -10.184 2.533 2.215 -2.641 2.567 H14 OK2 66 OK2 H15 H15 H 0 1 N N N -9.902 -9.602 2.517 1.296 -1.383 3.427 H15 OK2 67 OK2 H16 H16 H 0 1 N N N -10.268 -11.314 2.115 0.441 -2.586 2.433 H16 OK2 68 OK2 H17 H17 H 0 1 N N N -10.499 -13.464 6.329 0.648 -0.938 -1.970 H17 OK2 69 OK2 H18 H18 H 0 1 N N N -9.972 -11.695 7.945 1.764 1.241 -1.746 H18 OK2 70 OK2 H19 H19 H 0 1 N N N -15.422 -13.155 5.853 -3.832 -0.203 0.654 H19 OK2 71 OK2 H20 H20 H 0 1 N N N -15.161 -12.289 8.173 -3.361 2.251 0.912 H20 OK2 72 OK2 H21 H21 H 0 1 N N N -13.384 -12.218 7.919 -1.620 1.880 0.932 H21 OK2 73 OK2 H22 H22 H 0 1 N N N -18.341 -9.827 7.044 -6.033 2.842 -2.415 H22 OK2 74 OK2 H23 H23 H 0 1 N N N -18.221 -10.277 5.309 -6.252 1.075 -2.392 H23 OK2 75 OK2 H24 H24 H 0 1 N N N -22.273 -12.440 6.223 -10.562 2.511 -1.022 H24 OK2 76 OK2 H25 H25 H 0 1 N N N -21.542 -14.567 7.163 -10.265 2.515 1.424 H25 OK2 77 OK2 H26 H26 H 0 1 N N N -17.632 -13.169 7.310 -6.167 2.004 0.927 H26 OK2 78 OK2 H27 H27 H 0 1 N N N -16.838 -8.718 5.412 -4.674 1.762 -3.588 H27 OK2 79 OK2 H28 H28 H 0 1 N N N -14.846 -7.296 5.157 -2.545 1.485 -4.789 H28 OK2 80 OK2 H29 H29 H 0 1 N N N -12.654 -8.079 5.931 -0.442 1.242 -3.532 H29 OK2 81 OK2 H30 H30 H 0 1 N N N -12.418 -10.323 6.900 -0.464 1.280 -1.071 H30 OK2 82 OK2 H31 H31 H 0 1 N N N -15.388 -15.876 8.012 -4.083 0.889 4.122 H31 OK2 83 OK2 H32 H32 H 0 1 N N N -14.979 -16.343 3.060 -4.767 -4.004 0.610 H32 OK2 84 OK2 H33 H33 H 0 1 N N N -8.773 -13.241 0.368 2.692 -5.684 0.663 H33 OK2 85 OK2 H34 H34 H 0 1 N N N -6.427 -12.572 -0.001 5.105 -5.808 0.205 H34 OK2 86 OK2 H35 H35 H 0 1 N N N -5.767 -12.497 4.215 4.789 -2.483 -2.456 H35 OK2 87 OK2 H36 H36 H 0 1 N N N -8.110 -13.175 4.585 2.373 -2.350 -2.019 H36 OK2 88 OK2 H37 H37 H 0 1 N N N -8.225 -5.935 7.807 5.251 2.604 -1.561 H37 OK2 89 OK2 H38 H38 H 0 1 N N N -8.000 -7.518 6.988 5.790 4.252 -1.964 H38 OK2 90 OK2 H39 H39 H 0 1 N N N -5.588 -7.422 7.438 7.736 2.773 -1.603 H39 OK2 91 OK2 H40 H40 H 0 1 N N N -6.134 -5.978 6.520 7.133 2.360 0.021 H40 OK2 92 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OK2 C35 C34 DOUB Y N 1 OK2 C35 C36 SING Y N 2 OK2 C34 C33 SING Y N 3 OK2 S1 C15 SING Y N 4 OK2 S1 C14 SING Y N 5 OK2 F1 C36 SING N N 6 OK2 C36 C37 DOUB Y N 7 OK2 N6 C15 DOUB Y N 8 OK2 N6 C32 SING Y N 9 OK2 C33 C14 SING N N 10 OK2 C33 C38 DOUB Y N 11 OK2 C15 C16 SING Y N 12 OK2 C14 C13 DOUB Y N 13 OK2 C9 C8 SING N N 14 OK2 C32 N5 DOUB Y N 15 OK2 C37 C38 SING Y N 16 OK2 C16 C13 SING Y N 17 OK2 C16 C17 DOUB Y N 18 OK2 C13 C10 SING N N 19 OK2 C8 C10 DOUB Y N 20 OK2 C8 C7 SING Y N 21 OK2 N5 C17 SING Y N 22 OK2 C17 O2 SING N N 23 OK2 CL1 C7 SING N N 24 OK2 C10 C11 SING Y N 25 OK2 C7 C6 DOUB Y N 26 OK2 O2 C18 SING N N 27 OK2 C28 C27 DOUB Y N 28 OK2 C28 C29 SING Y N 29 OK2 C27 C21 SING Y N 30 OK2 C11 C12 DOUB Y N 31 OK2 C29 C30 DOUB Y N 32 OK2 N3 C24 DOUB Y N 33 OK2 N3 C23 SING Y N 34 OK2 C22 O3 SING N N 35 OK2 C22 C23 SING N N 36 OK2 C21 O3 SING N N 37 OK2 C21 C20 DOUB Y N 38 OK2 C18 C31 SING N N 39 OK2 C18 C19 SING N N 40 OK2 C24 C25 SING Y N 41 OK2 C6 C12 SING Y N 42 OK2 C6 O1 SING N N 43 OK2 C23 C26 DOUB Y N 44 OK2 C30 C20 SING Y N 45 OK2 C20 C19 SING N N 46 OK2 C25 N4 DOUB Y N 47 OK2 O5 C31 DOUB N N 48 OK2 C31 O4 SING N N 49 OK2 C26 N4 SING Y N 50 OK2 O1 C5 SING N N 51 OK2 C40 C39 SING N N 52 OK2 C40 N1 SING N N 53 OK2 C39 N2 SING N N 54 OK2 C1 N1 SING N N 55 OK2 N1 C2 SING N N 56 OK2 C5 C4 SING N N 57 OK2 N2 C4 SING N N 58 OK2 N2 C3 SING N N 59 OK2 C2 C3 SING N N 60 OK2 C1 H1 SING N N 61 OK2 C1 H2 SING N N 62 OK2 C1 H3 SING N N 63 OK2 C2 H5 SING N N 64 OK2 C2 H6 SING N N 65 OK2 C3 H7 SING N N 66 OK2 C3 H8 SING N N 67 OK2 C4 H10 SING N N 68 OK2 C4 H11 SING N N 69 OK2 C5 H12 SING N N 70 OK2 C5 H13 SING N N 71 OK2 C9 H14 SING N N 72 OK2 C9 H15 SING N N 73 OK2 C9 H16 SING N N 74 OK2 C11 H17 SING N N 75 OK2 C12 H18 SING N N 76 OK2 C18 H19 SING N N 77 OK2 C19 H20 SING N N 78 OK2 C19 H21 SING N N 79 OK2 C22 H22 SING N N 80 OK2 C22 H23 SING N N 81 OK2 C24 H24 SING N N 82 OK2 C25 H25 SING N N 83 OK2 C26 H26 SING N N 84 OK2 C27 H27 SING N N 85 OK2 C28 H28 SING N N 86 OK2 C29 H29 SING N N 87 OK2 C30 H30 SING N N 88 OK2 O4 H31 SING N N 89 OK2 C32 H32 SING N N 90 OK2 C34 H33 SING N N 91 OK2 C35 H34 SING N N 92 OK2 C37 H35 SING N N 93 OK2 C38 H36 SING N N 94 OK2 C39 H37 SING N N 95 OK2 C39 H38 SING N N 96 OK2 C40 H39 SING N N 97 OK2 C40 H40 SING N N 98 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OK2 InChI InChI 1.03 "InChI=1S/C40H38ClFN6O5S/c1-25-30(11-12-32(36(25)41)51-20-19-48-17-15-47(2)16-18-48)34-35-38(45-24-46-39(35)54-37(34)26-7-9-28(42)10-8-26)53-33(40(49)50)21-27-5-3-4-6-31(27)52-23-29-22-43-13-14-44-29/h3-14,22,24,33H,15-21,23H2,1-2H3,(H,49,50)/t33-/m1/s1" OK2 InChIKey InChI 1.03 SADZXBZFMGZHNM-MGBGTMOVSA-N OK2 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CCOc2ccc(c(C)c2Cl)c3c(sc4ncnc(O[C@H](Cc5ccccc5OCc6cnccn6)C(O)=O)c34)c7ccc(F)cc7)CC1" OK2 SMILES CACTVS 3.385 "CN1CCN(CCOc2ccc(c(C)c2Cl)c3c(sc4ncnc(O[CH](Cc5ccccc5OCc6cnccn6)C(O)=O)c34)c7ccc(F)cc7)CC1" OK2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc(c1Cl)OCCN2CCN(CC2)C)c3c4c(ncnc4sc3c5ccc(cc5)F)O[C@H](Cc6ccccc6OCc7cnccn7)C(=O)O" OK2 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc(c1Cl)OCCN2CCN(CC2)C)c3c4c(ncnc4sc3c5ccc(cc5)F)OC(Cc6ccccc6OCc7cnccn7)C(=O)O" # _pdbx_chem_comp_identifier.comp_id OK2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-(pyrazin-2-ylmethoxy)phenyl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OK2 "Create component" 2020-03-17 PDBE OK2 "Initial release" 2020-11-18 RCSB ##