data_OKR # _chem_comp.id OKR _chem_comp.name "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N10 O21 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-10 _chem_comp.pdbx_modified_date 2023-05-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 868.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OKR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UZR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OKR N1 N1 N 0 1 N N N -5.200 35.307 -19.686 -10.502 5.147 -0.350 N1 OKR 1 OKR C1 C1 C 0 1 N N N -4.014 35.358 -19.062 -9.941 4.053 -0.960 C1 OKR 2 OKR N2 N2 N 0 1 N N N -2.931 35.738 -19.740 -9.093 3.310 -0.285 N2 OKR 3 OKR C2 C2 C 0 1 Y N N -1.817 35.735 -18.967 -8.521 2.235 -0.840 C2 OKR 4 OKR C3 C3 C 0 1 Y N N -1.694 35.402 -17.636 -8.830 1.890 -2.160 C3 OKR 5 OKR N3 N3 N 0 1 Y N N -0.373 35.533 -17.218 -8.120 0.775 -2.461 N3 OKR 6 OKR C4 C4 C 0 1 Y N N 0.273 35.932 -18.292 -7.411 0.424 -1.427 C4 OKR 7 OKR N4 N4 N 0 1 Y N N -0.559 36.072 -19.388 -7.627 1.297 -0.401 N4 OKR 8 OKR C5 C5 C 0 1 N N R -0.220 36.500 -20.751 -7.013 1.240 0.928 C5 OKR 9 OKR O1 O1 O 0 1 N N N 0.230 35.381 -21.478 -5.787 0.478 0.884 O1 OKR 10 OKR C6 C6 C 0 1 N N R 1.073 35.830 -22.572 -5.544 0.068 2.247 C6 OKR 11 OKR C7 C7 C 0 1 N N N 2.322 34.980 -22.629 -4.601 -1.136 2.279 C7 OKR 12 OKR O2 O2 O 0 1 N N N 1.986 33.585 -22.402 -3.292 -0.727 1.878 O2 OKR 13 OKR P1 P1 P 0 1 N N N 2.332 32.854 -21.010 -2.043 -1.740 1.796 P1 OKR 14 OKR O3 O3 O 0 1 N N N 2.935 31.515 -21.336 -1.871 -2.418 3.100 O3 OKR 15 OKR O4 O4 O 0 1 N N N 3.115 33.741 -20.080 -2.317 -2.838 0.651 O4 OKR 16 OKR O5 O5 O 0 1 N N N 0.867 32.689 -20.366 -0.706 -0.916 1.439 O5 OKR 17 OKR C8 C8 C 0 1 N N R 0.224 31.430 -20.566 0.590 -1.516 1.397 C8 OKR 18 OKR C9 C9 C 0 1 N N R -1.274 31.656 -20.683 1.569 -0.756 2.320 C9 OKR 19 OKR O6 O6 O 0 1 N N N -1.588 32.849 -21.388 0.907 0.337 2.960 O6 OKR 20 OKR C10 C10 C 0 1 N N R -1.669 31.742 -19.205 2.664 -0.239 1.361 C10 OKR 21 OKR C11 C11 C 0 1 N N N -3.126 31.508 -18.896 4.036 -0.306 2.034 C11 OKR 22 OKR O7 O7 O 0 1 N N N -3.933 32.089 -19.951 5.016 0.282 1.177 O7 OKR 23 OKR P2 P2 P 0 1 N N N -5.279 31.375 -20.442 6.575 0.384 1.567 P2 OKR 24 OKR O8 O8 O 0 1 N N N -4.890 30.160 -21.211 7.089 -0.964 1.900 O8 OKR 25 OKR O9 O9 O 0 1 N N N -6.191 32.385 -21.074 6.748 1.354 2.840 O9 OKR 26 OKR O10 O10 O 0 1 N N N -5.931 30.963 -19.034 7.402 0.981 0.321 O10 OKR 27 OKR P3 P3 P 0 1 N N N -7.348 30.436 -18.503 8.955 0.959 -0.104 P3 OKR 28 OKR O11 O11 O 0 1 N N N -7.139 29.072 -17.924 9.304 -0.457 -0.787 O11 OKR 29 OKR O12 O12 O 0 1 N N N -8.409 30.641 -19.538 9.798 1.148 1.098 O12 OKR 30 OKR O13 O13 O 0 1 N N N -7.601 31.501 -17.339 9.242 2.146 -1.152 O13 OKR 31 OKR P4 P4 P 0 1 N N N -7.532 33.111 -17.409 10.579 2.848 -1.709 P4 OKR 32 OKR O14 O14 O 0 1 N N N -7.307 33.428 -18.857 11.576 1.809 -2.051 O14 OKR 33 OKR O15 O15 O 0 1 N N N -6.362 33.486 -16.529 10.227 3.706 -3.025 O15 OKR 34 OKR O16 O16 O 0 1 N N N -8.852 33.661 -16.896 11.185 3.822 -0.580 O16 OKR 35 OKR O17 O17 O 0 1 N N N -0.861 30.714 -18.580 2.615 -1.133 0.228 O17 OKR 36 OKR C12 C12 C 0 1 N N R 0.338 30.564 -19.312 1.210 -1.369 -0.010 C12 OKR 37 OKR N5 N5 N 0 1 Y N N 0.570 29.150 -19.593 1.022 -2.600 -0.781 N5 OKR 38 OKR C13 C13 C 0 1 Y N N 1.761 28.489 -19.410 1.919 -3.622 -0.900 C13 OKR 39 OKR N6 N6 N 0 1 Y N N 1.715 27.222 -19.743 1.425 -4.556 -1.660 N6 OKR 40 OKR C14 C14 C 0 1 Y N N 0.412 27.035 -20.184 0.186 -4.191 -2.072 C14 OKR 41 OKR C15 C15 C 0 1 N N N -0.218 25.863 -20.674 -0.799 -4.795 -2.888 C15 OKR 42 OKR O18 O18 O 0 1 N N N 0.272 24.733 -20.804 -0.604 -5.885 -3.398 O18 OKR 43 OKR N7 N7 N 0 1 N N N -1.551 26.102 -21.013 -1.960 -4.135 -3.087 N7 OKR 44 OKR C16 C16 C 0 1 N N N -2.194 27.312 -20.883 -2.167 -2.916 -2.511 C16 OKR 45 OKR N8 N8 N 0 1 N N N -3.480 27.354 -21.254 -3.357 -2.269 -2.731 N8 OKR 46 OKR N9 N9 N 0 1 N N N -1.606 28.417 -20.421 -1.260 -2.344 -1.752 N9 OKR 47 OKR C17 C17 C 0 1 Y N N -0.306 28.212 -20.098 -0.086 -2.938 -1.509 C17 OKR 48 OKR C18 C18 C 0 1 N N S 1.295 37.336 -22.335 -6.934 -0.323 2.795 C18 OKR 49 OKR O19 O19 O 0 1 N N N 0.463 38.146 -23.159 -7.062 0.073 4.162 O19 OKR 50 OKR C19 C19 C 0 1 N N R 0.911 37.517 -20.864 -7.924 0.468 1.909 C19 OKR 51 OKR O20 O20 O 0 1 N N N 0.481 38.830 -20.576 -8.693 1.375 2.702 O20 OKR 52 OKR C20 C20 C 0 1 N N N -2.848 34.998 -16.919 -9.744 2.697 -2.876 C20 OKR 53 OKR O21 O21 O 0 1 N N N -2.931 34.674 -15.728 -10.042 2.434 -4.028 O21 OKR 54 OKR N10 N10 N 0 1 N N N -3.987 35.009 -17.731 -10.285 3.765 -2.247 N10 OKR 55 OKR H1 H1 H 0 1 N N N -5.267 35.553 -20.653 -11.133 5.702 -0.834 H1 OKR 56 OKR H2 H2 H 0 1 N N N -6.017 35.023 -19.184 -10.270 5.362 0.567 H2 OKR 57 OKR H3 H3 H 0 1 N N N 1.335 36.128 -18.315 -6.752 -0.431 -1.388 H3 OKR 58 OKR H4 H4 H 0 1 N N N -1.116 36.923 -21.229 -6.822 2.246 1.301 H4 OKR 59 OKR H5 H5 H 0 1 N N N 0.528 35.711 -23.520 -5.126 0.893 2.824 H5 OKR 60 OKR H6 H6 H 0 1 N N N 2.789 35.085 -23.619 -4.561 -1.541 3.290 H6 OKR 61 OKR H7 H7 H 0 1 N N N 3.026 35.316 -21.854 -4.967 -1.902 1.595 H7 OKR 62 OKR H8 H8 H 0 1 N N N 3.917 33.301 -19.822 -2.440 -2.464 -0.232 H8 OKR 63 OKR H9 H9 H 0 1 N N N 0.612 30.897 -21.447 0.533 -2.567 1.681 H9 OKR 64 OKR H10 H10 H 0 1 N N N -1.751 30.779 -21.145 1.997 -1.430 3.061 H10 OKR 65 OKR H11 H11 H 0 1 N N N -2.531 32.950 -21.437 1.475 0.850 3.551 H11 OKR 66 OKR H12 H12 H 0 1 N N N -1.376 32.730 -18.820 2.444 0.783 1.050 H12 OKR 67 OKR H13 H13 H 0 1 N N N -3.380 31.980 -17.936 4.005 0.237 2.978 H13 OKR 68 OKR H14 H14 H 0 1 N N N -3.321 30.427 -18.836 4.297 -1.348 2.223 H14 OKR 69 OKR H15 H15 H 0 1 N N N -6.422 32.100 -21.950 6.431 2.256 2.694 H15 OKR 70 OKR H16 H16 H 0 1 N N N -7.753 28.463 -18.317 8.788 -0.647 -1.582 H16 OKR 71 OKR H17 H17 H 0 1 N N N -5.673 33.866 -17.062 10.988 4.158 -3.416 H17 OKR 72 OKR H18 H18 H 0 1 N N N -9.302 34.114 -17.600 10.584 4.529 -0.307 H18 OKR 73 OKR H19 H19 H 0 1 N N N 1.179 30.946 -18.715 0.766 -0.521 -0.533 H19 OKR 74 OKR H20 H20 H 0 1 N N N 2.650 28.968 -19.028 2.893 -3.651 -0.435 H20 OKR 75 OKR H21 H21 H 0 1 N N N -2.079 25.335 -21.378 -2.651 -4.529 -3.643 H21 OKR 76 OKR H22 H22 H 0 1 N N N -3.993 28.210 -21.184 -4.036 -2.679 -3.290 H22 OKR 77 OKR H23 H23 H 0 1 N N N -3.927 26.530 -21.601 -3.519 -1.401 -2.329 H23 OKR 78 OKR H24 H24 H 0 1 N N N 2.358 37.580 -22.476 -7.098 -1.395 2.691 H24 OKR 79 OKR H25 H25 H 0 1 N N N 0.634 39.063 -22.979 -7.917 -0.148 4.557 H25 OKR 80 OKR H26 H26 H 0 1 N N N 1.750 37.216 -20.220 -8.578 -0.213 1.365 H26 OKR 81 OKR H27 H27 H 0 1 N N N 0.254 38.895 -19.656 -9.237 0.944 3.375 H27 OKR 82 OKR H28 H28 H 0 1 N N N -4.853 34.741 -17.309 -10.918 4.331 -2.716 H28 OKR 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OKR O19 C18 SING N N 1 OKR C7 C6 SING N N 2 OKR C7 O2 SING N N 3 OKR C6 C18 SING N N 4 OKR C6 O1 SING N N 5 OKR O2 P1 SING N N 6 OKR C18 C19 SING N N 7 OKR O1 C5 SING N N 8 OKR O6 C9 SING N N 9 OKR O3 P1 DOUB N N 10 OKR N8 C16 SING N N 11 OKR O8 P2 DOUB N N 12 OKR O9 P2 SING N N 13 OKR N7 C16 SING N N 14 OKR N7 C15 SING N N 15 OKR P1 O5 SING N N 16 OKR P1 O4 SING N N 17 OKR C16 N9 DOUB N N 18 OKR C19 C5 SING N N 19 OKR C19 O20 SING N N 20 OKR O18 C15 DOUB N N 21 OKR C5 N4 SING N N 22 OKR C9 C8 SING N N 23 OKR C9 C10 SING N N 24 OKR C15 C14 SING N N 25 OKR C8 O5 SING N N 26 OKR C8 C12 SING N N 27 OKR P2 O7 SING N N 28 OKR P2 O10 SING N N 29 OKR N9 C17 SING N N 30 OKR C14 C17 DOUB Y N 31 OKR C14 N6 SING Y N 32 OKR C17 N5 SING Y N 33 OKR O7 C11 SING N N 34 OKR N6 C13 DOUB Y N 35 OKR N2 C1 DOUB N N 36 OKR N2 C2 SING N N 37 OKR N1 C1 SING N N 38 OKR N5 C13 SING Y N 39 OKR N5 C12 SING N N 40 OKR O12 P3 DOUB N N 41 OKR N4 C2 SING Y N 42 OKR N4 C4 SING Y N 43 OKR C12 O17 SING N N 44 OKR C10 C11 SING N N 45 OKR C10 O17 SING N N 46 OKR C1 N10 SING N N 47 OKR O10 P3 SING N N 48 OKR C2 C3 DOUB Y N 49 OKR O14 P4 DOUB N N 50 OKR P3 O11 SING N N 51 OKR P3 O13 SING N N 52 OKR C4 N3 DOUB Y N 53 OKR N10 C20 SING N N 54 OKR C3 N3 SING Y N 55 OKR C3 C20 SING N N 56 OKR P4 O13 SING N N 57 OKR P4 O16 SING N N 58 OKR P4 O15 SING N N 59 OKR C20 O21 DOUB N N 60 OKR N1 H1 SING N N 61 OKR N1 H2 SING N N 62 OKR C4 H3 SING N N 63 OKR C5 H4 SING N N 64 OKR C6 H5 SING N N 65 OKR C7 H6 SING N N 66 OKR C7 H7 SING N N 67 OKR O4 H8 SING N N 68 OKR C8 H9 SING N N 69 OKR C9 H10 SING N N 70 OKR O6 H11 SING N N 71 OKR C10 H12 SING N N 72 OKR C11 H13 SING N N 73 OKR C11 H14 SING N N 74 OKR O9 H15 SING N N 75 OKR O11 H16 SING N N 76 OKR O15 H17 SING N N 77 OKR O16 H18 SING N N 78 OKR C12 H19 SING N N 79 OKR C13 H20 SING N N 80 OKR N7 H21 SING N N 81 OKR N8 H22 SING N N 82 OKR N8 H23 SING N N 83 OKR C18 H24 SING N N 84 OKR O19 H25 SING N N 85 OKR C19 H26 SING N N 86 OKR O20 H27 SING N N 87 OKR N10 H28 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OKR InChI InChI 1.03 "InChI=1S/C20H28N10O21P4/c21-19-25-13-7(15(34)27-19)23-3-29(13)17-11(33)9(31)5(47-17)1-45-53(39,40)49-12-10(32)6(2-46-54(41,42)51-55(43,44)50-52(36,37)38)48-18(12)30-4-24-8-14(30)26-20(22)28-16(8)35/h3-6,9-12,17-18,31-33H,1-2H2,(H,39,40)(H,41,42)(H,43,44)(H2,36,37,38)(H3,21,25,27,34)(H3,22,26,28,35)/t5-,6-,9-,10-,11-,12-,17-,18-/m1/s1" OKR InChIKey InChI 1.03 GILDQNNERNWCKN-MHARETSRSA-N OKR SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]4n5cnc6C(=O)NC(=Nc56)N)[C@@H](O)[C@H]3O" OKR SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]4n5cnc6C(=O)NC(=Nc56)N)[CH](O)[CH]3O" OKR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5N=C(NC6=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N" OKR SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5N=C(NC6=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id OKR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OKR "Create component" 2022-05-10 RCSB OKR "Initial release" 2023-05-10 RCSB #