data_OS5 # _chem_comp.id OS5 _chem_comp.name "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N8 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-03 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.613 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OS5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DYW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OS5 O O1 O 0 1 N N N -1.043 -16.835 -42.239 -3.847 3.478 -1.330 O OS5 1 OS5 C15 C1 C 0 1 N N R 0.035 -17.761 -42.240 -3.516 2.757 -0.141 C15 OS5 2 OS5 C14 C2 C 0 1 N N N 0.633 -17.712 -40.849 -4.731 1.948 0.349 C14 OS5 3 OS5 N N1 N 0 1 N N N -0.109 -18.780 -40.189 -4.350 0.520 0.299 N OS5 4 OS5 C7 C3 C 0 1 N N N 0.087 -19.098 -38.795 -4.979 -0.232 1.393 C7 OS5 5 OS5 C8 C4 C 0 1 Y N N 1.059 -20.277 -38.692 -6.462 -0.333 1.147 C8 OS5 6 OS5 C13 C5 C 0 1 Y N N 2.427 -20.419 -38.933 -7.131 -1.274 0.254 C13 OS5 7 OS5 N4 N2 N 0 1 Y N N 3.291 -19.477 -39.410 -6.725 -2.253 -0.558 N4 OS5 8 OS5 C12 C6 C 0 1 Y N N 4.565 -19.849 -39.559 -7.599 -2.945 -1.255 C12 OS5 9 OS5 N3 N3 N 0 1 Y N N 5.037 -21.079 -39.288 -8.898 -2.713 -1.191 N3 OS5 10 OS5 C11 C7 C 0 1 Y N N 4.202 -22.043 -38.818 -9.392 -1.758 -0.410 C11 OS5 11 OS5 N2 N4 N 0 1 N N N 4.720 -23.269 -38.555 -10.757 -1.526 -0.352 N2 OS5 12 OS5 C10 C8 C 0 1 Y N N 2.849 -21.703 -38.631 -8.505 -0.992 0.354 C10 OS5 13 OS5 N1 N5 N 0 1 Y N N 1.734 -22.372 -38.212 -8.646 0.046 1.245 N1 OS5 14 OS5 C9 C9 C 0 1 Y N N 0.670 -21.528 -38.248 -7.421 0.424 1.712 C9 OS5 15 OS5 C6 C10 C 0 1 N N N -0.994 -19.566 -41.033 -2.870 0.491 0.415 C6 OS5 16 OS5 C5 C11 C 0 1 N N S -0.298 -19.213 -42.276 -2.424 1.704 -0.438 C5 OS5 17 OS5 C4 C12 C 0 1 N N N 0.523 -20.238 -42.973 -1.051 2.208 0.012 C4 OS5 18 OS5 S S1 S 0 1 N N N 0.772 -20.093 -44.703 0.223 1.015 -0.485 S OS5 19 OS5 C3 C13 C 0 1 N N N -0.610 -21.049 -45.266 1.753 1.774 0.126 C3 OS5 20 OS5 C2 C14 C 0 1 N N N -0.707 -21.171 -46.780 2.942 0.875 -0.220 C2 OS5 21 OS5 C1 C15 C 0 1 N N N -1.948 -22.007 -47.044 4.233 1.515 0.295 C1 OS5 22 OS5 C C16 C 0 1 Y N N -2.250 -22.133 -48.508 5.403 0.630 -0.045 C OS5 23 OS5 N5 N6 N 0 1 Y N N -1.358 -22.430 -49.476 5.548 -0.662 0.269 N5 OS5 24 OS5 N7 N7 N 0 1 Y N N -2.050 -22.449 -50.700 6.674 -1.079 -0.189 N7 OS5 25 OS5 N6 N8 N 0 1 Y N N -3.375 -22.167 -50.375 7.288 -0.124 -0.796 N6 OS5 26 OS5 C16 C17 C 0 1 Y N N -3.507 -21.957 -49.071 6.513 0.984 -0.734 C16 OS5 27 OS5 C17 C18 C 0 1 N N N -4.306 -22.158 -51.499 8.598 -0.220 -1.445 C17 OS5 28 OS5 C18 C19 C 0 1 Y N N -5.075 -20.867 -51.569 9.611 -0.738 -0.457 C18 OS5 29 OS5 C23 C20 C 0 1 Y N N -6.249 -20.700 -50.826 9.828 -2.098 -0.338 C23 OS5 30 OS5 C22 C21 C 0 1 Y N N -6.956 -19.499 -50.925 10.757 -2.573 0.568 C22 OS5 31 OS5 C21 C22 C 0 1 Y N N -6.486 -18.477 -51.760 11.470 -1.688 1.355 C21 OS5 32 OS5 C20 C23 C 0 1 Y N N -5.313 -18.650 -52.504 11.253 -0.328 1.236 C20 OS5 33 OS5 C19 C24 C 0 1 Y N N -4.607 -19.850 -52.407 10.328 0.147 0.326 C19 OS5 34 OS5 H1 H1 H 0 1 N N N -0.700 -15.949 -42.215 -4.559 4.122 -1.214 H1 OS5 35 OS5 H2 H2 H 0 1 N N N 0.793 -17.512 -42.997 -3.181 3.444 0.636 H2 OS5 36 OS5 H3 H3 H 0 1 N N N 1.713 -17.921 -40.866 -4.977 2.231 1.373 H3 OS5 37 OS5 H4 H4 H 0 1 N N N 0.455 -16.739 -40.367 -5.585 2.127 -0.304 H4 OS5 38 OS5 H6 H6 H 0 1 N N N 0.506 -18.226 -38.272 -4.549 -1.233 1.441 H6 OS5 39 OS5 H7 H7 H 0 1 N N N -0.876 -19.371 -38.339 -4.802 0.284 2.337 H7 OS5 40 OS5 H8 H8 H 0 1 N N N 5.265 -19.111 -39.922 -7.242 -3.731 -1.904 H8 OS5 41 OS5 H9 H9 H 0 1 N N N 5.698 -23.269 -38.762 -11.363 -2.063 -0.886 H9 OS5 42 OS5 H10 H10 H 0 1 N N N 4.584 -23.488 -37.589 -11.106 -0.826 0.221 H10 OS5 43 OS5 H11 H11 H 0 1 N N N 1.706 -23.329 -37.925 -9.490 0.448 1.505 H11 OS5 44 OS5 H12 H12 H 0 1 N N N -0.338 -21.796 -37.969 -7.246 1.214 2.427 H12 OS5 45 OS5 H13 H13 H 0 1 N N N -2.037 -19.218 -41.008 -2.563 0.618 1.454 H13 OS5 46 OS5 H14 H14 H 0 1 N N N -0.961 -20.643 -40.810 -2.469 -0.437 0.008 H14 OS5 47 OS5 H15 H15 H 0 1 N N N -1.159 -19.180 -42.960 -2.413 1.448 -1.498 H15 OS5 48 OS5 H16 H16 H 0 1 N N N 0.042 -21.211 -42.797 -0.846 3.172 -0.454 H16 OS5 49 OS5 H17 H17 H 0 1 N N N 1.517 -20.230 -42.502 -1.042 2.319 1.096 H17 OS5 50 OS5 H18 H18 H 0 1 N N N -1.531 -20.574 -44.898 1.887 2.750 -0.343 H18 OS5 51 OS5 H19 H19 H 0 1 N N N -0.525 -22.061 -44.843 1.692 1.896 1.207 H19 OS5 52 OS5 H20 H20 H 0 1 N N N 0.186 -21.671 -47.183 2.808 -0.100 0.249 H20 OS5 53 OS5 H21 H21 H 0 1 N N N -0.809 -20.177 -47.240 3.003 0.754 -1.301 H21 OS5 54 OS5 H22 H22 H 0 1 N N N -2.806 -21.533 -46.545 4.366 2.491 -0.173 H22 OS5 55 OS5 H23 H23 H 0 1 N N N -1.792 -23.013 -46.627 4.171 1.637 1.377 H23 OS5 56 OS5 H24 H24 H 0 1 N N N -4.416 -21.699 -48.549 6.738 1.957 -1.146 H24 OS5 57 OS5 H25 H25 H 0 1 N N N -5.015 -22.990 -51.382 8.534 -0.903 -2.292 H25 OS5 58 OS5 H26 H26 H 0 1 N N N -3.740 -22.288 -52.433 8.903 0.766 -1.796 H26 OS5 59 OS5 H27 H27 H 0 1 N N N -6.605 -21.491 -50.183 9.271 -2.790 -0.953 H27 OS5 60 OS5 H28 H28 H 0 1 N N N -7.864 -19.359 -50.358 10.926 -3.636 0.662 H28 OS5 61 OS5 H29 H29 H 0 1 N N N -7.033 -17.548 -51.830 12.196 -2.059 2.064 H29 OS5 62 OS5 H30 H30 H 0 1 N N N -4.957 -17.860 -53.149 11.814 0.364 1.848 H30 OS5 63 OS5 H31 H31 H 0 1 N N N -3.701 -19.993 -52.978 10.159 1.210 0.232 H31 OS5 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OS5 C20 C19 DOUB Y N 1 OS5 C20 C21 SING Y N 2 OS5 C19 C18 SING Y N 3 OS5 C21 C22 DOUB Y N 4 OS5 C18 C17 SING N N 5 OS5 C18 C23 DOUB Y N 6 OS5 C17 N6 SING N N 7 OS5 C22 C23 SING Y N 8 OS5 N7 N6 SING Y N 9 OS5 N7 N5 DOUB Y N 10 OS5 N6 C16 SING Y N 11 OS5 N5 C SING Y N 12 OS5 C16 C DOUB Y N 13 OS5 C C1 SING N N 14 OS5 C1 C2 SING N N 15 OS5 C2 C3 SING N N 16 OS5 C3 S SING N N 17 OS5 S C4 SING N N 18 OS5 C4 C5 SING N N 19 OS5 C5 C15 SING N N 20 OS5 C5 C6 SING N N 21 OS5 C15 O SING N N 22 OS5 C15 C14 SING N N 23 OS5 C6 N SING N N 24 OS5 C14 N SING N N 25 OS5 N C7 SING N N 26 OS5 C12 N4 DOUB Y N 27 OS5 C12 N3 SING Y N 28 OS5 N4 C13 SING Y N 29 OS5 N3 C11 DOUB Y N 30 OS5 C13 C8 SING Y N 31 OS5 C13 C10 DOUB Y N 32 OS5 C11 C10 SING Y N 33 OS5 C11 N2 SING N N 34 OS5 C7 C8 SING N N 35 OS5 C8 C9 DOUB Y N 36 OS5 C10 N1 SING Y N 37 OS5 C9 N1 SING Y N 38 OS5 O H1 SING N N 39 OS5 C15 H2 SING N N 40 OS5 C14 H3 SING N N 41 OS5 C14 H4 SING N N 42 OS5 C7 H6 SING N N 43 OS5 C7 H7 SING N N 44 OS5 C12 H8 SING N N 45 OS5 N2 H9 SING N N 46 OS5 N2 H10 SING N N 47 OS5 N1 H11 SING N N 48 OS5 C9 H12 SING N N 49 OS5 C6 H13 SING N N 50 OS5 C6 H14 SING N N 51 OS5 C5 H15 SING N N 52 OS5 C4 H16 SING N N 53 OS5 C4 H17 SING N N 54 OS5 C3 H18 SING N N 55 OS5 C3 H19 SING N N 56 OS5 C2 H20 SING N N 57 OS5 C2 H21 SING N N 58 OS5 C1 H22 SING N N 59 OS5 C1 H23 SING N N 60 OS5 C16 H24 SING N N 61 OS5 C17 H25 SING N N 62 OS5 C17 H26 SING N N 63 OS5 C23 H27 SING N N 64 OS5 C22 H28 SING N N 65 OS5 C21 H29 SING N N 66 OS5 C20 H30 SING N N 67 OS5 C19 H31 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OS5 SMILES ACDLabs 12.01 "OC3CN(Cc1cnc2c1ncnc2N)CC3CSCCCc4nnn(c4)Cc5ccccc5" OS5 InChI InChI 1.03 "InChI=1S/C24H30N8OS/c25-24-23-22(27-16-28-24)18(9-26-23)11-31-12-19(21(33)14-31)15-34-8-4-7-20-13-32(30-29-20)10-17-5-2-1-3-6-17/h1-3,5-6,9,13,16,19,21,26,33H,4,7-8,10-12,14-15H2,(H2,25,27,28)/t19-,21+/m1/s1" OS5 InChIKey InChI 1.03 BROXRHKDLDDNBO-CTNGQTDRSA-N OS5 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCCc4cn(Cc5ccccc5)nn4)C3)c[nH]c12" OS5 SMILES CACTVS 3.385 "Nc1ncnc2c(CN3C[CH](O)[CH](CSCCCc4cn(Cc5ccccc5)nn4)C3)c[nH]c12" OS5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)Cn2cc(nn2)CCCSC[C@H]3CN(C[C@@H]3O)Cc4c[nH]c5c4ncnc5N" OS5 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)Cn2cc(nn2)CCCSCC3CN(CC3O)Cc4c[nH]c5c4ncnc5N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OS5 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol" OS5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[3-[1-(phenylmethyl)-1,2,3-triazol-4-yl]propylsulfanylmethyl]pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OS5 "Create component" 2018-07-03 RCSB OS5 "Other modification" 2018-07-03 RCSB OS5 "Initial release" 2019-03-20 RCSB ##