data_OSO # _chem_comp.id OSO _chem_comp.name "stemmadenine acetate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H29 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl (1~{S},2~{S},14~{S})-2-(acetyloxymethyl)-16-ethylidene-4-aza-14-azoniatetracyclo[12.2.2.0^{3,11}.0^{5,10}]octadeca-3(11),5,7,9-tetraene-2-carboxylate" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-09-19 _chem_comp.pdbx_modified_date 2022-10-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OSO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B25 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OSO C1 C1 C 0 1 N N N 38.599 27.701 106.670 -1.726 0.769 2.716 C1 OSO 1 OSO C2 C2 C 0 1 N N N 38.399 29.208 106.745 -0.458 -0.037 2.604 C2 OSO 2 OSO C3 C3 C 0 1 N N N 39.574 29.975 105.924 -0.407 -1.073 1.797 C3 OSO 3 OSO C4 C4 C 0 1 N N N 39.556 31.362 106.122 0.237 -2.378 2.240 C4 OSO 4 OSO C5 C5 C 0 1 N N N 39.937 33.028 104.486 1.968 -2.568 0.617 C5 OSO 5 OSO C7 C6 C 0 1 Y N N 37.698 32.300 103.914 1.839 -0.340 -0.444 C7 OSO 6 OSO C8 C7 C 0 1 Y N N 37.243 30.880 104.139 0.787 0.493 -0.349 C8 OSO 7 OSO C10 C8 C 0 1 Y N N 34.491 32.765 105.600 3.528 2.819 0.074 C10 OSO 8 OSO C11 C9 C 0 1 Y N N 34.372 34.183 105.721 4.867 2.466 0.071 C11 OSO 9 OSO C12 C10 C 0 1 Y N N 35.412 35.056 105.184 5.288 1.158 -0.102 C12 OSO 10 OSO C13 C11 C 0 1 Y N N 36.587 34.548 104.578 4.401 0.124 -0.282 C13 OSO 11 OSO C14 C12 C 0 1 Y N N 36.700 33.157 104.443 3.042 0.454 -0.283 C14 OSO 12 OSO C15 C13 C 0 1 N N S 38.058 29.514 103.714 -0.696 0.125 -0.430 C15 OSO 13 OSO C16 C14 C 0 1 N N N 37.124 28.327 104.070 -1.563 1.288 0.049 C16 OSO 14 OSO C17 C15 C 0 1 N N N 36.781 26.367 102.909 -3.843 1.764 0.553 C17 OSO 15 OSO C18 C16 C 0 1 N N N 36.917 25.845 104.360 -5.297 1.386 0.676 C18 OSO 16 OSO C20 C17 C 0 1 N N N 37.305 29.937 100.027 -2.530 -0.784 -3.619 C20 OSO 17 OSO C21 C18 C 0 1 N N S 39.482 29.422 104.473 -0.973 -1.094 0.394 C21 OSO 18 OSO C22 C19 C 0 1 N N N 40.642 30.142 103.735 -1.337 -2.438 -0.097 C22 OSO 19 OSO C23 C20 C 0 1 N N N 41.367 31.168 104.677 -0.176 -3.416 0.019 C23 OSO 20 OSO C19 C21 C 0 1 N N N 38.177 29.453 102.243 -1.039 -0.135 -1.877 C19 OSO 21 OSO C6 C22 C 0 1 N N N 39.102 32.748 103.315 1.776 -1.830 -0.699 C6 OSO 22 OSO C9 C23 C 0 1 Y N N 35.651 32.246 104.963 2.606 1.790 -0.106 C9 OSO 23 OSO N1 N1 N 1 1 N N S 40.438 32.063 105.276 0.724 -3.153 1.122 N1 OSO 24 OSO N2 N2 N 0 1 Y N N 36.060 30.863 104.709 1.242 1.777 -0.154 N2 OSO 25 OSO O1 O1 O 0 1 N N N 36.686 27.762 102.821 -2.946 0.854 0.144 O1 OSO 26 OSO O2 O2 O 0 1 N N N 36.797 25.639 101.948 -3.486 2.886 0.824 O2 OSO 27 OSO O3 O3 O 0 1 N N N 39.050 28.839 101.711 -0.207 0.036 -2.736 O3 OSO 28 OSO O4 O4 O 0 1 N N N 37.206 30.075 101.443 -2.270 -0.554 -2.209 O4 OSO 29 OSO H1 H1 H 0 1 N N N 37.798 27.196 107.229 -2.298 0.428 3.579 H1 OSO 30 OSO H2 H2 H 0 1 N N N 38.571 27.379 105.618 -1.477 1.823 2.840 H2 OSO 31 OSO H3 H3 H 0 1 N N N 39.573 27.438 107.108 -2.320 0.640 1.812 H3 OSO 32 OSO H4 H4 H 0 1 N N N 37.592 29.698 107.269 0.410 0.237 3.187 H4 OSO 33 OSO H7 H7 H 0 1 N N N 39.837 31.568 107.165 1.066 -2.160 2.918 H7 OSO 34 OSO H8 H8 H 0 1 N N N 38.534 31.726 105.938 -0.505 -2.971 2.785 H8 OSO 35 OSO H9 H9 H 0 1 N N N 40.803 33.594 104.112 2.723 -3.361 0.484 H9 OSO 36 OSO H10 H10 H 0 1 N N N 39.333 33.673 105.141 2.381 -1.872 1.367 H10 OSO 37 OSO H11 H11 H 0 1 N N N 33.724 32.107 105.981 3.214 3.843 0.209 H11 OSO 38 OSO H12 H12 H 0 1 N N N 33.510 34.611 106.211 5.609 3.238 0.207 H12 OSO 39 OSO H13 H13 H 0 1 N N N 35.281 36.126 105.251 6.346 0.944 -0.095 H13 OSO 40 OSO H14 H14 H 0 1 N N N 37.368 35.209 104.232 4.736 -0.893 -0.416 H14 OSO 41 OSO H15 H15 H 0 1 N N N 36.260 28.684 104.649 -1.218 1.619 1.029 H15 OSO 42 OSO H16 H16 H 0 1 N N N 37.672 27.575 104.656 -1.489 2.113 -0.660 H16 OSO 43 OSO H17 H17 H 0 1 N N N 37.024 24.750 104.348 -5.402 0.572 1.393 H17 OSO 44 OSO H18 H18 H 0 1 N N N 37.804 26.295 104.830 -5.869 2.248 1.020 H18 OSO 45 OSO H19 H19 H 0 1 N N N 36.019 26.119 104.934 -5.672 1.066 -0.296 H19 OSO 46 OSO H20 H20 H 0 1 N N N 36.476 30.478 99.547 -3.559 -1.119 -3.750 H20 OSO 47 OSO H21 H21 H 0 1 N N N 38.263 30.355 99.684 -2.377 0.143 -4.172 H21 OSO 48 OSO H22 H22 H 0 1 N N N 37.252 28.872 99.758 -1.849 -1.547 -3.995 H22 OSO 49 OSO H23 H23 H 0 1 N N N 39.741 28.354 104.518 -1.981 -0.799 0.705 H23 OSO 50 OSO H24 H24 H 0 1 N N N 41.370 29.392 103.394 -2.162 -2.817 0.526 H24 OSO 51 OSO H25 H25 H 0 1 N N N 40.235 30.679 102.866 -1.691 -2.419 -1.122 H25 OSO 52 OSO H26 H26 H 0 1 N N N 41.895 30.617 105.469 -0.636 -4.410 0.218 H26 OSO 53 OSO H27 H27 H 0 1 N N N 42.093 31.747 104.086 0.338 -3.539 -0.920 H27 OSO 54 OSO H28 H28 H 0 1 N N N 39.541 31.940 102.711 2.590 -2.097 -1.389 H28 OSO 55 OSO H29 H29 H 0 1 N N N 38.989 33.650 102.695 0.837 -2.051 -1.190 H29 OSO 56 OSO H30 H30 H 0 1 N N N 41.009 32.568 105.923 0.970 -4.080 1.520 H30 OSO 57 OSO H31 H31 H 0 1 N N N 35.529 30.045 104.932 0.706 2.581 -0.067 H31 OSO 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OSO C20 O4 SING N N 1 OSO O4 C19 SING N N 2 OSO O3 C19 DOUB N N 3 OSO O2 C17 DOUB N N 4 OSO C19 C15 SING N N 5 OSO O1 C17 SING N N 6 OSO O1 C16 SING N N 7 OSO C17 C18 SING N N 8 OSO C6 C7 SING N N 9 OSO C6 C5 SING N N 10 OSO C15 C16 SING N N 11 OSO C15 C8 SING N N 12 OSO C15 C21 SING N N 13 OSO C22 C21 SING N N 14 OSO C22 C23 SING N N 15 OSO C7 C8 DOUB Y N 16 OSO C7 C14 SING Y N 17 OSO C8 N2 SING Y N 18 OSO C14 C13 DOUB Y N 19 OSO C14 C9 SING Y N 20 OSO C21 C3 SING N N 21 OSO C5 N1 SING N N 22 OSO C13 C12 SING Y N 23 OSO C23 N1 SING N N 24 OSO N2 C9 SING Y N 25 OSO C9 C10 DOUB Y N 26 OSO C12 C11 DOUB Y N 27 OSO N1 C4 SING N N 28 OSO C10 C11 SING Y N 29 OSO C3 C4 SING N N 30 OSO C3 C2 DOUB N E 31 OSO C1 C2 SING N N 32 OSO C1 H1 SING N N 33 OSO C1 H2 SING N N 34 OSO C1 H3 SING N N 35 OSO C2 H4 SING N N 36 OSO C4 H7 SING N N 37 OSO C4 H8 SING N N 38 OSO C5 H9 SING N N 39 OSO C5 H10 SING N N 40 OSO C10 H11 SING N N 41 OSO C11 H12 SING N N 42 OSO C12 H13 SING N N 43 OSO C13 H14 SING N N 44 OSO C16 H15 SING N N 45 OSO C16 H16 SING N N 46 OSO C18 H17 SING N N 47 OSO C18 H18 SING N N 48 OSO C18 H19 SING N N 49 OSO C20 H20 SING N N 50 OSO C20 H21 SING N N 51 OSO C20 H22 SING N N 52 OSO C21 H23 SING N N 53 OSO C22 H24 SING N N 54 OSO C22 H25 SING N N 55 OSO C23 H26 SING N N 56 OSO C23 H27 SING N N 57 OSO C6 H28 SING N N 58 OSO C6 H29 SING N N 59 OSO N1 H30 SING N N 60 OSO N2 H31 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OSO InChI InChI 1.06 "InChI=1S/C23H28N2O4/c1-4-16-13-25-11-9-18-17-7-5-6-8-20(17)24-21(18)23(22(27)28-3,14-29-15(2)26)19(16)10-12-25/h4-8,19,24H,9-14H2,1-3H3/p+1/b16-4-/t19-,23-/m0/s1" OSO InChIKey InChI 1.06 ZNCUMLJVNWXVLT-ISNKGDJGSA-O OSO SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@]1(COC(C)=O)[C@H]2CC[N@@H+](CCc3c1[nH]c4ccccc34)C\C2=C\C" OSO SMILES CACTVS 3.385 "COC(=O)[C]1(COC(C)=O)[CH]2CC[NH+](CCc3c1[nH]c4ccccc34)CC2=CC" OSO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC=C1C[N@@H+]2CCc3c4ccccc4[nH]c3[C@@]([C@H]1CC2)(COC(=O)C)C(=O)OC" OSO SMILES "OpenEye OEToolkits" 3.1.0.0 "CC=C1C[NH+]2CCc3c4ccccc4[nH]c3C(C1CC2)(COC(=O)C)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id OSO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "methyl (1~{S},2~{S},14~{S})-2-(acetyloxymethyl)-16-ethylidene-4-aza-14-azoniatetracyclo[12.2.2.0^{3,11}.0^{5,10}]octadeca-3(11),5,7,9-tetraene-2-carboxylate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id OSO _pdbx_chem_comp_synonyms.name "methyl (1~{S},2~{S},14~{S})-2-(acetyloxymethyl)-16-ethylidene-4-aza-14-azoniatetracyclo[12.2.2.0^{3,11}.0^{5,10}]octadeca-3(11),5,7,9-tetraene-2-carboxylate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OSO "Create component" 2022-09-19 PDBE OSO "Initial release" 2022-10-19 RCSB #