data_P4Y # _chem_comp.id P4Y _chem_comp.name "5,6-dihydroxy-2-[(2-phenyl-1H-indol-3-yl)methyl]pyrimidine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H15 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-02-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P4Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QIP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P4Y C01 C01 C 0 1 Y N N 2.200 74.947 37.996 4.356 -2.453 0.040 C01 P4Y 1 P4Y C02 C02 C 0 1 Y N N 2.823 76.099 37.512 5.044 -1.730 -0.925 C02 P4Y 2 P4Y C03 C03 C 0 1 Y N N 2.831 76.404 36.148 4.615 -0.477 -1.305 C03 P4Y 3 P4Y C04 C04 C 0 1 Y N N 2.183 75.504 35.296 3.480 0.073 -0.717 C04 P4Y 4 P4Y C05 C05 C 0 1 Y N N 1.547 74.340 35.742 2.785 -0.664 0.261 C05 P4Y 5 P4Y C06 C06 C 0 1 Y N N 1.559 74.055 37.124 3.236 -1.936 0.626 C06 P4Y 6 P4Y N07 N07 N 0 1 Y N N 2.037 75.552 33.937 2.819 1.270 -0.879 N07 P4Y 7 P4Y C08 C08 C 0 1 Y N N 1.314 74.466 33.481 1.730 1.318 -0.040 C08 P4Y 8 P4Y C09 C09 C 0 1 Y N N 0.987 73.660 34.605 1.659 0.169 0.678 C09 P4Y 9 P4Y C10 C10 C 0 1 Y N N 1.117 74.343 32.031 0.782 2.448 0.064 C10 P4Y 10 P4Y C11 C11 C 0 1 N N N 0.250 72.354 34.746 0.617 -0.181 1.709 C11 P4Y 11 P4Y C12 C12 C 0 1 Y N N -1.238 72.489 34.521 -0.537 -0.882 1.039 C12 P4Y 12 P4Y C13 C13 C 0 1 Y N N 1.415 75.428 31.186 0.289 3.058 -1.090 C13 P4Y 13 P4Y C14 C14 C 0 1 Y N N 1.274 75.298 29.799 -0.594 4.113 -0.986 C14 P4Y 14 P4Y C15 C15 C 0 1 Y N N 0.868 74.080 29.242 -0.991 4.566 0.260 C15 P4Y 15 P4Y C16 C16 C 0 1 Y N N 0.596 72.985 30.067 -0.506 3.966 1.408 C16 P4Y 16 P4Y C17 C17 C 0 1 Y N N 0.737 73.113 31.455 0.373 2.907 1.317 C17 P4Y 17 P4Y N18 N18 N 0 1 Y N N -1.774 71.520 33.750 -1.535 -0.163 0.577 N18 P4Y 18 P4Y C19 C19 C 0 1 Y N N -3.095 71.579 33.505 -2.577 -0.742 -0.023 C19 P4Y 19 P4Y C20 C20 C 0 1 Y N N -3.901 72.576 34.021 -2.592 -2.133 -0.155 C20 P4Y 20 P4Y C21 C21 C 0 1 Y N N -3.263 73.524 34.801 -1.503 -2.856 0.355 C21 P4Y 21 P4Y N22 N22 N 0 1 Y N N -1.938 73.510 35.080 -0.509 -2.197 0.931 N22 P4Y 22 P4Y C23 C23 C 0 1 N N N -3.539 70.467 32.650 -3.697 0.075 -0.540 C23 P4Y 23 P4Y O24 O24 O 0 1 N N N -5.229 72.657 33.794 -3.630 -2.766 -0.757 O24 P4Y 24 P4Y O25 O25 O 0 1 N N N -4.006 74.554 35.341 -1.466 -4.208 0.255 O25 P4Y 25 P4Y O26 O26 O 0 1 N N N -2.880 69.564 32.175 -4.640 -0.462 -1.085 O26 P4Y 26 P4Y O27 O27 O 0 1 N N N -4.834 70.523 32.416 -3.671 1.416 -0.407 O27 P4Y 27 P4Y H01 H01 H 0 1 N N N 2.212 74.740 39.056 4.706 -3.434 0.326 H01 P4Y 28 P4Y H02 H02 H 0 1 N N N 3.309 76.769 38.206 5.926 -2.154 -1.383 H02 P4Y 29 P4Y H03 H03 H 0 1 N N N 3.315 77.293 35.770 5.158 0.077 -2.056 H03 P4Y 30 P4Y H06 H06 H 0 1 N N N 1.082 73.164 37.504 2.706 -2.504 1.376 H06 P4Y 31 P4Y H11 H11 H 0 1 N N N 0.650 71.649 34.002 1.055 -0.839 2.459 H11 P4Y 32 P4Y H11A H11A H 0 0 N N N 0.412 71.974 35.765 0.260 0.730 2.189 H11A P4Y 33 P4Y H13 H13 H 0 1 N N N 1.753 76.363 31.608 0.599 2.706 -2.063 H13 P4Y 34 P4Y H14 H14 H 0 1 N N N 1.479 76.141 29.156 -0.977 4.586 -1.878 H14 P4Y 35 P4Y H15 H15 H 0 1 N N N 0.765 73.986 28.171 -1.682 5.393 0.336 H15 P4Y 36 P4Y H16 H16 H 0 1 N N N 0.279 72.046 29.637 -0.819 4.325 2.377 H16 P4Y 37 P4Y H17 H17 H 0 1 N N N 0.553 72.260 32.091 0.752 2.439 2.214 H17 P4Y 38 P4Y HO27 HO27 H 0 0 N N N -5.089 69.792 31.866 -4.425 1.907 -0.760 HO27 P4Y 39 P4Y HN07 HN07 H 0 0 N N N 2.404 76.275 33.352 3.081 1.973 -1.493 HN07 P4Y 40 P4Y H141 H141 H 0 0 N N N -5.582 73.416 34.243 -3.521 -2.881 -1.711 H141 P4Y 41 P4Y H151 H151 H 0 0 N N N -3.439 75.121 35.851 -1.045 -4.531 -0.553 H151 P4Y 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P4Y C01 H01 SING N N 1 P4Y C02 C01 SING Y N 2 P4Y C02 H02 SING N N 3 P4Y C03 C02 DOUB Y N 4 P4Y C03 H03 SING N N 5 P4Y C04 C03 SING Y N 6 P4Y C04 C05 DOUB Y N 7 P4Y C05 C06 SING Y N 8 P4Y C06 C01 DOUB Y N 9 P4Y C06 H06 SING N N 10 P4Y N07 C04 SING Y N 11 P4Y N07 HN07 SING N N 12 P4Y C08 N07 SING Y N 13 P4Y C08 C09 DOUB Y N 14 P4Y C09 C05 SING Y N 15 P4Y C09 C11 SING N N 16 P4Y C10 C08 SING Y N 17 P4Y C11 H11 SING N N 18 P4Y C11 H11A SING N N 19 P4Y C12 C11 SING N N 20 P4Y C12 N22 DOUB Y N 21 P4Y C13 C10 DOUB Y N 22 P4Y C13 H13 SING N N 23 P4Y C14 C13 SING Y N 24 P4Y C14 H14 SING N N 25 P4Y C15 C14 DOUB Y N 26 P4Y C15 C16 SING Y N 27 P4Y C15 H15 SING N N 28 P4Y C16 C17 DOUB Y N 29 P4Y C16 H16 SING N N 30 P4Y C17 C10 SING Y N 31 P4Y C17 H17 SING N N 32 P4Y N18 C12 SING Y N 33 P4Y C19 N18 DOUB Y N 34 P4Y C19 C20 SING Y N 35 P4Y C20 C21 DOUB Y N 36 P4Y C21 N22 SING Y N 37 P4Y C21 O25 SING N N 38 P4Y C23 C19 SING N N 39 P4Y O24 C20 SING N N 40 P4Y O26 C23 DOUB N N 41 P4Y O27 C23 SING N N 42 P4Y O27 HO27 SING N N 43 P4Y O24 H141 SING N N 44 P4Y O25 H151 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P4Y SMILES ACDLabs 12.01 "O=C(O)c1nc(nc(O)c1O)Cc3c2ccccc2nc3c4ccccc4" P4Y SMILES_CANONICAL CACTVS 3.370 "OC(=O)c1nc(Cc2c([nH]c3ccccc23)c4ccccc4)nc(O)c1O" P4Y SMILES CACTVS 3.370 "OC(=O)c1nc(Cc2c([nH]c3ccccc23)c4ccccc4)nc(O)c1O" P4Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2c(c3ccccc3[nH]2)Cc4nc(c(c(n4)O)O)C(=O)O" P4Y SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2c(c3ccccc3[nH]2)Cc4nc(c(c(n4)O)O)C(=O)O" P4Y InChI InChI 1.03 "InChI=1S/C20H15N3O4/c24-18-17(20(26)27)22-15(23-19(18)25)10-13-12-8-4-5-9-14(12)21-16(13)11-6-2-1-3-7-11/h1-9,21,24H,10H2,(H,26,27)(H,22,23,25)" P4Y InChIKey InChI 1.03 JONQCFJPPWOWOJ-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P4Y "SYSTEMATIC NAME" ACDLabs 12.01 "5,6-dihydroxy-2-[(2-phenyl-1H-indol-3-yl)methyl]pyrimidine-4-carboxylic acid" P4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "5,6-dihydroxy-2-[(2-phenyl-1H-indol-3-yl)methyl]pyrimidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P4Y "Create component" 2011-02-08 RCSB P4Y "Modify aromatic_flag" 2011-06-04 RCSB P4Y "Modify descriptor" 2011-06-04 RCSB #