data_P5K # _chem_comp.id P5K _chem_comp.name "1-{5-tert-butyl-3-[(1,1-dioxidothiomorpholin-4-yl)carbonyl]thiophen-2-yl}-3-naphthalen-1-ylurea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N3 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-10-12 _chem_comp.pdbx_modified_date 2011-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 485.619 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P5K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3P5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P5K C1 C1 C 0 1 Y N N 49.269 27.237 -17.006 -2.344 1.533 0.370 C1 P5K 1 P5K C2 C2 C 0 1 Y N N 50.462 28.060 -16.794 -1.452 0.416 0.592 C2 P5K 2 P5K C3 C3 C 0 1 Y N N 50.998 28.667 -17.994 -0.137 0.734 0.372 C3 P5K 3 P5K S4 S4 S 0 1 Y N N 49.807 28.332 -19.292 0.018 2.365 -0.097 S4 P5K 4 P5K C5 C5 C 0 1 Y N N 48.769 27.188 -18.379 -1.713 2.638 -0.000 C5 P5K 5 P5K C6 C6 C 0 1 N N N 47.559 26.590 -18.944 -2.390 3.951 -0.298 C6 P5K 6 P5K C7 C7 C 0 1 N N N 46.752 27.542 -19.810 -3.141 4.432 0.945 C7 P5K 7 P5K C8 C8 C 0 1 N N N 46.643 26.292 -17.792 -1.337 4.990 -0.692 C8 P5K 8 P5K C9 C9 C 0 1 N N N 47.883 25.368 -19.781 -3.378 3.765 -1.451 C9 P5K 9 P5K N10 N10 N 0 1 N N N 52.213 29.371 -18.151 0.922 -0.150 0.513 N10 P5K 10 P5K C11 C11 C 0 1 N N N 51.324 28.020 -15.534 -1.907 -0.914 1.007 C11 P5K 11 P5K O12 O12 O 0 1 N N N 51.838 26.961 -15.204 -1.433 -1.437 1.999 O12 P5K 12 P5K N13 N13 N 0 1 N N N 51.579 29.119 -14.813 -2.850 -1.558 0.291 N13 P5K 13 P5K C14 C14 C 0 1 N N N 52.319 30.287 -19.113 2.182 0.264 0.272 C14 P5K 14 P5K N15 N15 N 0 1 N N N 53.454 30.980 -19.206 3.211 -0.595 0.409 N15 P5K 15 P5K O16 O16 O 0 1 N N N 51.386 30.496 -19.892 2.390 1.413 -0.068 O16 P5K 16 P5K C17 C17 C 0 1 Y N N 53.731 32.093 -20.035 4.524 -0.138 0.279 C17 P5K 17 P5K C18 C18 C 0 1 Y N N 52.897 33.283 -20.006 4.826 1.185 0.519 C18 P5K 18 P5K C19 C19 C 0 1 Y N N 53.246 34.384 -20.892 6.132 1.651 0.392 C19 P5K 19 P5K C20 C20 C 0 1 Y N N 54.386 34.297 -21.791 7.144 0.816 0.028 C20 P5K 20 P5K C21 C21 C 0 1 Y N N 55.210 33.098 -21.824 6.878 -0.540 -0.226 C21 P5K 21 P5K C22 C22 C 0 1 Y N N 54.888 32.002 -20.922 5.554 -1.028 -0.094 C22 P5K 22 P5K C23 C23 C 0 1 N N N 51.521 30.519 -15.286 -3.385 -2.832 0.776 C23 P5K 23 P5K C24 C24 C 0 1 N N N 52.248 28.871 -13.505 -3.334 -0.975 -0.961 C24 P5K 24 P5K C25 C25 C 0 1 Y N N 56.339 33.010 -22.742 7.903 -1.426 -0.602 C25 P5K 25 P5K C26 C26 C 0 1 Y N N 57.174 31.817 -22.745 7.609 -2.734 -0.840 C26 P5K 26 P5K C27 C27 C 0 1 Y N N 56.862 30.730 -21.820 6.306 -3.210 -0.715 C27 P5K 27 P5K C28 C28 C 0 1 Y N N 55.729 30.814 -20.912 5.290 -2.384 -0.342 C28 P5K 28 P5K C29 C29 C 0 1 N N N 50.831 31.431 -14.293 -4.874 -2.673 1.094 C29 P5K 29 P5K C30 C30 C 0 1 N N N 51.677 29.674 -12.341 -4.818 -0.624 -0.822 C30 P5K 30 P5K S31 S31 S 0 1 N N N 51.672 31.445 -12.690 -5.743 -2.125 -0.405 S31 P5K 31 P5K O32 O32 O 0 1 N N N 50.590 32.383 -11.650 -7.069 -1.755 -0.052 O32 P5K 32 P5K O33 O33 O 0 1 N N N 53.158 32.236 -13.242 -5.538 -3.091 -1.427 O33 P5K 33 P5K H1 H1 H 0 1 N N N 48.790 26.701 -16.200 -3.415 1.472 0.489 H1 P5K 34 P5K H7 H7 H 0 1 N N N 45.863 27.023 -20.196 -2.437 4.565 1.766 H7 P5K 35 P5K H7A H7A H 0 1 N N N 46.438 28.408 -19.209 -3.630 5.381 0.729 H7A P5K 36 P5K H7B H7B H 0 1 N N N 47.371 27.885 -20.652 -3.891 3.692 1.225 H7B P5K 37 P5K H8 H8 H 0 1 N N N 45.714 25.839 -18.169 -0.802 4.648 -1.577 H8 P5K 38 P5K H8A H8A H 0 1 N N N 47.138 25.593 -17.101 -1.827 5.940 -0.907 H8A P5K 39 P5K H8B H8B H 0 1 N N N 46.406 27.226 -17.261 -0.633 5.123 0.130 H8B P5K 40 P5K H9 H9 H 0 1 N N N 46.953 24.945 -20.189 -4.128 3.025 -1.171 H9 P5K 41 P5K H9A H9A H 0 1 N N N 48.548 25.656 -20.608 -3.868 4.715 -1.667 H9A P5K 42 P5K H9B H9B H 0 1 N N N 48.383 24.616 -19.153 -2.843 3.423 -2.337 H9B P5K 43 P5K HN10 HN10 H 0 0 N N N 52.986 29.184 -17.546 0.756 -1.066 0.785 HN10 P5K 44 P5K HN15 HN15 H 0 0 N N N 54.203 30.676 -18.617 3.040 -1.531 0.598 HN15 P5K 45 P5K H18 H18 H 0 1 N N N 52.044 33.348 -19.347 4.042 1.868 0.809 H18 P5K 46 P5K H19 H19 H 0 1 N N N 52.647 35.283 -20.882 6.346 2.692 0.584 H19 P5K 47 P5K H20 H20 H 0 1 N N N 54.623 35.128 -22.439 8.151 1.196 -0.066 H20 P5K 48 P5K H23 H23 H 0 1 N N N 52.549 30.880 -15.438 -3.257 -3.595 0.008 H23 P5K 49 P5K H23A H23A H 0 0 N N N 50.962 30.546 -16.233 -2.850 -3.131 1.678 H23A P5K 50 P5K H24 H24 H 0 1 N N N 52.135 27.803 -13.266 -2.766 -0.072 -1.184 H24 P5K 51 P5K H24A H24A H 0 0 N N N 53.309 29.141 -13.613 -3.204 -1.694 -1.770 H24A P5K 52 P5K H25 H25 H 0 1 N N N 56.555 33.825 -23.416 8.917 -1.070 -0.703 H25 P5K 53 P5K H26 H26 H 0 1 N N N 58.012 31.737 -23.421 8.399 -3.411 -1.129 H26 P5K 54 P5K H27 H27 H 0 1 N N N 57.484 29.847 -21.810 6.100 -4.253 -0.909 H27 P5K 55 P5K H28 H28 H 0 1 N N N 55.513 30.001 -20.235 4.285 -2.767 -0.249 H28 P5K 56 P5K H29 H29 H 0 1 N N N 50.828 32.454 -14.698 -5.281 -3.629 1.423 H29 P5K 57 P5K H29A H29A H 0 0 N N N 49.800 31.076 -14.147 -5.002 -1.930 1.882 H29A P5K 58 P5K H30 H30 H 0 1 N N N 50.643 29.347 -12.160 -4.946 0.116 -0.032 H30 P5K 59 P5K H30A H30A H 0 0 N N N 52.295 29.491 -11.449 -5.188 -0.221 -1.765 H30A P5K 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P5K C1 C2 SING Y N 1 P5K C1 C5 DOUB Y N 2 P5K C2 C3 DOUB Y N 3 P5K C2 C11 SING N N 4 P5K C3 S4 SING Y N 5 P5K C3 N10 SING N N 6 P5K S4 C5 SING Y N 7 P5K C5 C6 SING N N 8 P5K C6 C7 SING N N 9 P5K C6 C8 SING N N 10 P5K C6 C9 SING N N 11 P5K N10 C14 SING N N 12 P5K C11 O12 DOUB N N 13 P5K C11 N13 SING N N 14 P5K N13 C23 SING N N 15 P5K N13 C24 SING N N 16 P5K C14 N15 SING N N 17 P5K C14 O16 DOUB N N 18 P5K N15 C17 SING N N 19 P5K C17 C18 DOUB Y N 20 P5K C17 C22 SING Y N 21 P5K C18 C19 SING Y N 22 P5K C19 C20 DOUB Y N 23 P5K C20 C21 SING Y N 24 P5K C21 C22 DOUB Y N 25 P5K C21 C25 SING Y N 26 P5K C22 C28 SING Y N 27 P5K C23 C29 SING N N 28 P5K C24 C30 SING N N 29 P5K C25 C26 DOUB Y N 30 P5K C26 C27 SING Y N 31 P5K C27 C28 DOUB Y N 32 P5K C29 S31 SING N N 33 P5K C30 S31 SING N N 34 P5K S31 O32 DOUB N N 35 P5K S31 O33 DOUB N N 36 P5K C1 H1 SING N N 37 P5K C7 H7 SING N N 38 P5K C7 H7A SING N N 39 P5K C7 H7B SING N N 40 P5K C8 H8 SING N N 41 P5K C8 H8A SING N N 42 P5K C8 H8B SING N N 43 P5K C9 H9 SING N N 44 P5K C9 H9A SING N N 45 P5K C9 H9B SING N N 46 P5K N10 HN10 SING N N 47 P5K N15 HN15 SING N N 48 P5K C18 H18 SING N N 49 P5K C19 H19 SING N N 50 P5K C20 H20 SING N N 51 P5K C23 H23 SING N N 52 P5K C23 H23A SING N N 53 P5K C24 H24 SING N N 54 P5K C24 H24A SING N N 55 P5K C25 H25 SING N N 56 P5K C26 H26 SING N N 57 P5K C27 H27 SING N N 58 P5K C28 H28 SING N N 59 P5K C29 H29 SING N N 60 P5K C29 H29A SING N N 61 P5K C30 H30 SING N N 62 P5K C30 H30A SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P5K SMILES ACDLabs 12.01 "O=C(Nc2sc(cc2C(=O)N1CCS(=O)(=O)CC1)C(C)(C)C)Nc4c3ccccc3ccc4" P5K SMILES_CANONICAL CACTVS 3.370 "CC(C)(C)c1sc(NC(=O)Nc2cccc3ccccc23)c(c1)C(=O)N4CC[S](=O)(=O)CC4" P5K SMILES CACTVS 3.370 "CC(C)(C)c1sc(NC(=O)Nc2cccc3ccccc23)c(c1)C(=O)N4CC[S](=O)(=O)CC4" P5K SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)(C)c1cc(c(s1)NC(=O)Nc2cccc3c2cccc3)C(=O)N4CCS(=O)(=O)CC4" P5K SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)(C)c1cc(c(s1)NC(=O)Nc2cccc3c2cccc3)C(=O)N4CCS(=O)(=O)CC4" P5K InChI InChI 1.03 "InChI=1S/C24H27N3O4S2/c1-24(2,3)20-15-18(22(28)27-11-13-33(30,31)14-12-27)21(32-20)26-23(29)25-19-10-6-8-16-7-4-5-9-17(16)19/h4-10,15H,11-14H2,1-3H3,(H2,25,26,29)" P5K InChIKey InChI 1.03 MGCVZCZJPOZRQX-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P5K "SYSTEMATIC NAME" ACDLabs 12.01 "1-{5-tert-butyl-3-[(1,1-dioxidothiomorpholin-4-yl)carbonyl]thiophen-2-yl}-3-naphthalen-1-ylurea" P5K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "1-[5-tert-butyl-3-[(1,1-dioxo-1,4-thiazinan-4-yl)carbonyl]thiophen-2-yl]-3-naphthalen-1-yl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P5K "Create component" 2010-10-12 RCSB P5K "Modify aromatic_flag" 2011-06-04 RCSB P5K "Modify descriptor" 2011-06-04 RCSB #