data_P5P # _chem_comp.id P5P _chem_comp.name ;PURINE RIBOSIDE-5'-MONOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 N4 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.207 _chem_comp.one_letter_code A _chem_comp.three_letter_code P5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RBN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P5P N1 N1 N 0 1 Y N N 18.473 25.817 -4.354 -0.886 0.457 6.020 N1 P5P 1 P5P C2 C2 C 0 1 Y N N 19.080 25.465 -5.492 0.144 1.055 5.452 C2 P5P 2 P5P N3 N3 N 0 1 Y N N 18.835 25.886 -6.737 0.400 0.948 4.165 N3 P5P 3 P5P C4 C4 C 0 1 Y N N 17.803 26.774 -6.714 -0.381 0.217 3.383 C4 P5P 4 P5P C5 C5 C 0 1 Y N N 17.096 27.245 -5.636 -1.497 -0.434 3.948 C5 P5P 5 P5P C6 C6 C 0 1 Y N N 17.460 26.713 -4.391 -1.723 -0.287 5.317 C6 P5P 6 P5P N7 N7 N 0 1 Y N N 16.090 28.144 -6.041 -2.120 -1.097 2.944 N7 P5P 7 P5P C8 C8 C 0 1 Y N N 16.272 28.187 -7.333 -1.480 -0.896 1.829 C8 P5P 8 P5P N9 N9 N 0 1 Y N N 17.262 27.416 -7.725 -0.403 -0.090 2.046 N9 P5P 9 P5P "C1'" "C1'" C 0 1 N N R 17.714 27.376 -8.971 0.559 0.359 1.037 "C1'" P5P 10 P5P "C2'" "C2'" C 0 1 N N R 17.394 28.553 -9.932 1.731 -0.640 0.928 "C2'" P5P 11 P5P "O2'" "O2'" O 0 1 N N N 17.387 28.197 -11.337 2.854 -0.184 1.684 "O2'" P5P 12 P5P "C3'" "C3'" C 0 1 N N S 18.595 29.443 -9.613 2.066 -0.662 -0.579 "C3'" P5P 13 P5P "O3'" "O3'" O 0 1 N N N 18.876 30.293 -10.736 3.406 -0.217 -0.801 "O3'" P5P 14 P5P "C4'" "C4'" C 0 1 N N R 19.730 28.429 -9.312 1.057 0.325 -1.206 "C4'" P5P 15 P5P "O4'" "O4'" O 0 1 N N N 19.107 27.095 -9.245 -0.047 0.362 -0.273 "O4'" P5P 16 P5P "C5'" "C5'" C 0 1 N N N 20.525 28.875 -8.040 0.584 -0.179 -2.571 "C5'" P5P 17 P5P "O5'" "O5'" O 0 1 N N N 21.399 30.040 -8.217 -0.400 0.714 -3.094 "O5'" P5P 18 P5P P P P 0 1 N N N 22.943 29.930 -8.820 -0.850 0.125 -4.523 P P5P 19 P5P OP1 O1P O 0 1 N N N 23.448 31.207 -9.429 -1.415 -1.231 -4.342 OP1 P5P 20 P5P OP2 O2P O 0 1 N N N 22.971 28.732 -9.717 -1.965 1.087 -5.173 OP2 P5P 21 P5P OP3 O3P O 0 1 N Y N 23.809 29.601 -7.477 0.427 0.048 -5.499 OP3 P5P 22 P5P H2 H2 H 0 1 N N N 19.893 24.727 -5.389 0.801 1.654 6.065 H2 P5P 23 P5P H6 H6 H 0 1 N N N 16.955 26.996 -3.451 -2.563 -0.771 5.793 H6 P5P 24 P5P H8 H8 H 0 1 N N N 15.660 28.802 -8.013 -1.762 -1.307 0.871 H8 P5P 25 P5P "H1'" "H1'" H 0 1 N N N 17.085 26.477 -9.169 0.930 1.354 1.286 "H1'" P5P 26 P5P "H2'" "H2'" H 0 1 N N N 16.377 28.987 -9.786 1.421 -1.629 1.265 "H2'" P5P 27 P5P "HO2'" "'HO2" H 0 0 N N N 17.191 28.917 -11.924 3.570 -0.815 1.528 "HO2'" P5P 28 P5P "H3'" "H3'" H 0 1 N N N 18.442 30.137 -8.754 1.924 -1.663 -0.987 "H3'" P5P 29 P5P "HO3'" "'HO3" H 0 0 N Y N 19.622 30.846 -10.537 3.987 -0.854 -0.364 "HO3'" P5P 30 P5P "H4'" "H4'" H 0 1 N N N 20.507 28.388 -10.110 1.506 1.313 -1.302 "H4'" P5P 31 P5P "H5'1" "1H5'" H 0 0 N N N 19.821 29.050 -7.192 1.432 -0.226 -3.254 "H5'1" P5P 32 P5P "H5'2" "2H5'" H 0 0 N N N 21.110 28.016 -7.635 0.151 -1.173 -2.460 "H5'2" P5P 33 P5P HOP2 2HOP H 0 0 N N N 23.854 28.669 -10.061 -2.207 0.700 -6.025 HOP2 P5P 34 P5P HOP3 3HOP H 0 0 N N N 24.692 29.538 -7.821 0.763 0.950 -5.590 HOP3 P5P 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P5P N1 C2 SING Y N 1 P5P N1 C6 DOUB Y N 2 P5P C2 N3 DOUB Y N 3 P5P C2 H2 SING N N 4 P5P N3 C4 SING Y N 5 P5P C4 C5 DOUB Y N 6 P5P C4 N9 SING Y N 7 P5P C5 C6 SING Y N 8 P5P C5 N7 SING Y N 9 P5P C6 H6 SING N N 10 P5P N7 C8 DOUB Y N 11 P5P C8 N9 SING Y N 12 P5P C8 H8 SING N N 13 P5P N9 "C1'" SING N N 14 P5P "C1'" "C2'" SING N N 15 P5P "C1'" "O4'" SING N N 16 P5P "C1'" "H1'" SING N N 17 P5P "C2'" "O2'" SING N N 18 P5P "C2'" "C3'" SING N N 19 P5P "C2'" "H2'" SING N N 20 P5P "O2'" "HO2'" SING N N 21 P5P "C3'" "O3'" SING N N 22 P5P "C3'" "C4'" SING N N 23 P5P "C3'" "H3'" SING N N 24 P5P "O3'" "HO3'" SING N N 25 P5P "C4'" "O4'" SING N N 26 P5P "C4'" "C5'" SING N N 27 P5P "C4'" "H4'" SING N N 28 P5P "C5'" "O5'" SING N N 29 P5P "C5'" "H5'1" SING N N 30 P5P "C5'" "H5'2" SING N N 31 P5P "O5'" P SING N N 32 P5P P OP1 DOUB N N 33 P5P P OP2 SING N N 34 P5P P OP3 SING N N 35 P5P OP2 HOP2 SING N N 36 P5P OP3 HOP3 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P5P SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1cncnc12)C(O)C3O" P5P SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3cncnc23" P5P SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3cncnc23" P5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" P5P SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" P5P InChI InChI 1.03 "InChI=1S/C10H13N4O7P/c15-7-6(2-20-22(17,18)19)21-10(8(7)16)14-4-13-5-1-11-3-12-9(5)14/h1,3-4,6-8,10,15-16H,2H2,(H2,17,18,19)/t6-,7-,8-,10-/m1/s1" P5P InChIKey InChI 1.03 MCWDCZIDTUQRHK-FDDDBJFASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P5P "SYSTEMATIC NAME" ACDLabs 10.04 "9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine" P5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-purin-9-yl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P5P "Create component" 1999-07-08 RCSB P5P "Modify descriptor" 2011-06-04 RCSB #