data_P6D # _chem_comp.id P6D _chem_comp.name "2'-azidocytidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-31 _chem_comp.pdbx_modified_date 2020-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 6PWZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P6D C02 C1 C 0 1 N N S -12.023 22.795 23.875 ? ? ? C02 P6D 1 P6D C03 C2 C 0 1 N N R -11.466 22.761 22.419 ? ? ? C03 P6D 2 P6D C04 C3 C 0 1 N N N -12.322 22.038 21.657 ? ? ? C04 P6D 3 P6D C11 C4 C 0 1 N N R -10.824 24.828 23.108 ? ? ? C11 P6D 4 P6D C12 C5 C 0 1 N N R -11.753 24.039 24.220 ? ? ? C12 P6D 5 P6D C17 C6 C 0 1 N N N -11.927 27.173 23.532 ? ? ? C17 P6D 6 P6D C18 C7 C 0 1 N N N -11.755 28.662 23.679 ? ? ? C18 P6D 7 P6D C19 C8 C 0 1 N N N -10.392 29.245 23.526 ? ? ? C19 P6D 8 P6D C21 C9 C 0 1 N N N -9.422 26.927 23.111 ? ? ? C21 P6D 9 P6D N13 N1 N 0 1 N N N -11.931 24.431 25.641 ? ? ? N13 P6D 10 P6D N14 N2 N 1 1 N N N -11.641 25.553 26.091 ? ? ? N14 P6D 11 P6D N15 N3 N -1 1 N N N -11.994 25.771 27.253 ? ? ? N15 P6D 12 P6D N16 N4 N 0 1 N N N -10.769 26.295 23.246 ? ? ? N16 P6D 13 P6D N20 N5 N 0 1 N N N -9.233 28.400 23.245 ? ? ? N20 P6D 14 P6D N23 N6 N 0 1 N N N -10.217 30.680 23.660 ? ? ? N23 P6D 15 P6D O01 O1 O 0 1 N N N -11.352 21.817 24.766 ? ? ? O01 P6D 16 P6D O05 O2 O 0 1 N N N -13.003 21.188 22.560 ? ? ? O05 P6D 17 P6D O10 O3 O 0 1 N N N -11.354 24.351 22.008 ? ? ? O10 P6D 18 P6D O22 O4 O 0 1 N N N -8.506 26.222 22.889 ? ? ? O22 P6D 19 P6D H1 H1 H 0 1 N N N -13.104 22.593 23.846 ? ? ? H1 P6D 20 P6D H2 H2 H 0 1 N N N -10.452 22.335 22.428 ? ? ? H2 P6D 21 P6D H3 H3 H 0 1 N N N -13.033 22.701 21.142 ? ? ? H3 P6D 22 P6D H4 H4 H 0 1 N N N -11.769 21.445 20.913 ? ? ? H4 P6D 23 P6D H5 H5 H 0 1 N N N -9.803 24.439 23.237 ? ? ? H5 P6D 24 P6D H6 H6 H 0 1 N N N -12.704 24.468 23.872 ? ? ? H6 P6D 25 P6D H7 H7 H 0 1 N N N -12.910 26.739 23.637 ? ? ? H7 P6D 26 P6D H8 H8 H 0 1 N N N -12.604 29.295 23.891 ? ? ? H8 P6D 27 P6D H10 H10 H 0 1 N N N -11.796 26.640 27.672 ? ? ? H10 P6D 28 P6D H11 H11 H 0 1 N N N -9.308 31.084 23.560 ? ? ? H11 P6D 29 P6D H12 H12 H 0 1 N N N -11.006 31.264 23.852 ? ? ? H12 P6D 30 P6D H13 H13 H 0 1 N N N -11.724 21.875 25.638 ? ? ? H13 P6D 31 P6D H14 H14 H 0 1 N N N -13.624 20.650 22.082 ? ? ? H14 P6D 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P6D C04 C03 SING N N 1 P6D C04 O05 SING N N 2 P6D O10 C03 SING N N 3 P6D O10 C11 SING N N 4 P6D C03 C02 SING N N 5 P6D O22 C21 DOUB N N 6 P6D C11 N16 SING N N 7 P6D C11 C12 SING N N 8 P6D C21 N20 SING N N 9 P6D C21 N16 SING N N 10 P6D N20 C19 DOUB N N 11 P6D N16 C17 SING N N 12 P6D C19 N23 SING N N 13 P6D C19 C18 SING N N 14 P6D C17 C18 DOUB N N 15 P6D C02 C12 SING N N 16 P6D C02 O01 SING N N 17 P6D C12 N13 SING N N 18 P6D N13 N14 DOUB N N 19 P6D N14 N15 DOUB N N 20 P6D C02 H1 SING N N 21 P6D C03 H2 SING N N 22 P6D C04 H3 SING N N 23 P6D C04 H4 SING N N 24 P6D C11 H5 SING N N 25 P6D C12 H6 SING N N 26 P6D C17 H7 SING N N 27 P6D C18 H8 SING N N 28 P6D N15 H10 SING N N 29 P6D N23 H11 SING N N 30 P6D N23 H12 SING N N 31 P6D O01 H13 SING N N 32 P6D O05 H14 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P6D InChI InChI 1.03 "InChI=1S/C9H13N6O4/c10-5-1-2-15(9(18)12-5)8-6(13-14-11)7(17)4(3-16)19-8/h1-2,4,6-8,11,16-17H,3H2,(H2,10,12,18)/t4-,6-,7-,8-/m1/s1" P6D InChIKey InChI 1.03 SXKUZFQHWHCRFO-XVFCMESISA-N P6D SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2N=[N+]=[NH-]" P6D SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2N=[N+]=[NH-]" P6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)N=[N+]=[NH-]" P6D SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)N=[N+]=[NH-]" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P6D "Create component" 2019-07-31 RCSB P6D "Initial release" 2020-07-29 RCSB ##