data_P9N # _chem_comp.id P9N _chem_comp.name Pregnanolone _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H34 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3alpha,5beta)-3-Hydroxypregnan-20-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P9N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5O8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P9N C01 C1 C 0 1 N N N 59.470 271.739 414.143 -2.883 1.550 0.984 C01 P9N 1 P9N O01 O1 O 0 1 N N N 58.233 275.176 415.035 -4.744 0.643 -2.150 O01 P9N 2 P9N C02 C2 C 0 1 N N N 58.844 272.843 414.995 -3.388 1.699 -0.452 C02 P9N 3 P9N O02 O2 O 0 1 N N N 67.246 270.724 418.416 5.076 -0.200 0.507 O02 P9N 4 P9N C03 C3 C 0 1 N N R 58.780 274.138 414.218 -4.274 0.504 -0.808 C03 P9N 5 P9N C04 C4 C 0 1 N N N 60.160 274.535 413.733 -3.464 -0.788 -0.682 C04 P9N 6 P9N C05 C5 C 0 1 N N R 60.853 273.434 412.916 -2.960 -0.936 0.754 C05 P9N 7 P9N C06 C6 C 0 1 N N N 62.235 273.885 412.438 -2.150 -2.228 0.879 C06 P9N 8 P9N C07 C7 C 0 1 N N N 63.249 273.929 413.579 -0.956 -2.178 -0.076 C07 P9N 9 P9N C08 C8 C 0 1 N N R 63.334 272.602 414.336 -0.068 -0.985 0.282 C08 P9N 10 P9N C09 C9 C 0 1 N N S 61.940 272.158 414.817 -0.884 0.310 0.145 C09 P9N 11 P9N C10 C10 C 0 1 N N S 60.894 272.060 413.641 -2.071 0.259 1.107 C10 P9N 12 P9N C11 C11 C 0 1 N N N 62.006 270.905 415.703 -0.033 1.542 0.430 C11 P9N 13 P9N C12 C12 C 0 1 N N N 63.016 271.018 416.845 1.223 1.574 -0.458 C12 P9N 14 P9N C13 C13 C 0 1 N N S 64.425 271.401 416.364 1.989 0.291 -0.201 C13 P9N 15 P9N C14 C14 C 0 1 N N S 64.276 272.702 415.543 1.099 -0.887 -0.683 C14 P9N 16 P9N C15 C15 C 0 1 N N N 65.723 273.181 415.357 2.090 -2.055 -0.656 C15 P9N 17 P9N C16 C16 C 0 1 N N N 66.422 272.792 416.676 3.385 -1.426 -1.238 C16 P9N 18 P9N C17 C17 C 0 1 N N S 65.415 271.914 417.455 3.281 0.099 -0.988 C17 P9N 19 P9N C18 C18 C 0 1 N N N 65.058 270.247 415.562 2.269 0.147 1.296 C18 P9N 20 P9N C19 C19 C 0 1 N N N 61.283 270.947 412.648 -1.562 0.111 2.543 C19 P9N 21 P9N C20 C20 C 0 1 N N N 66.045 270.855 418.337 4.460 0.577 -0.181 C20 P9N 22 P9N C21 C21 C 0 1 N N N 65.129 269.987 419.136 4.870 2.027 -0.233 C21 P9N 23 P9N H1 H1 H 0 1 N N N 58.825 271.571 413.268 -2.252 2.402 1.238 H1 P9N 24 P9N H2 H2 H 0 1 N N N 59.516 270.821 414.747 -3.732 1.512 1.666 H2 P9N 25 P9N H3 H3 H 0 1 N N N 57.369 274.921 415.335 -5.267 1.441 -2.303 H3 P9N 26 P9N H4 H4 H 0 1 N N N 57.826 272.544 415.285 -3.966 2.619 -0.541 H4 P9N 27 P9N H5 H5 H 0 1 N N N 59.453 272.993 415.899 -2.538 1.737 -1.134 H5 P9N 28 P9N H6 H6 H 0 1 N N N 58.136 273.984 413.340 -5.124 0.467 -0.127 H6 P9N 29 P9N H7 H7 H 0 1 N N N 60.785 274.767 414.608 -4.096 -1.639 -0.935 H7 P9N 30 P9N H8 H8 H 0 1 N N N 60.065 275.431 413.102 -2.614 -0.752 -1.364 H8 P9N 31 P9N H9 H9 H 0 1 N N N 60.243 273.287 412.013 -3.809 -0.971 1.436 H9 P9N 32 P9N H10 H10 H 0 1 N N N 62.593 273.181 411.672 -1.792 -2.335 1.903 H10 P9N 33 P9N H11 H11 H 0 1 N N N 62.149 274.891 412.001 -2.782 -3.079 0.625 H11 P9N 34 P9N H12 H12 H 0 1 N N N 64.240 274.162 413.162 -0.380 -3.099 0.013 H12 P9N 35 P9N H13 H13 H 0 1 N N N 62.953 274.720 414.284 -1.313 -2.070 -1.100 H13 P9N 36 P9N H14 H14 H 0 1 N N N 63.725 271.835 413.652 0.291 -1.087 1.306 H14 P9N 37 P9N H15 H15 H 0 1 N N N 61.575 272.967 415.467 -1.271 0.376 -0.872 H15 P9N 38 P9N H16 H16 H 0 1 N N N 61.010 270.731 416.135 -0.626 2.437 0.240 H16 P9N 39 P9N H17 H17 H 0 1 N N N 62.287 270.048 415.073 0.271 1.532 1.476 H17 P9N 40 P9N H18 H18 H 0 1 N N N 62.665 271.787 417.549 0.934 1.629 -1.508 H18 P9N 41 P9N H19 H19 H 0 1 N N N 63.073 270.048 417.360 1.840 2.434 -0.198 H19 P9N 42 P9N H20 H20 H 0 1 N N N 63.809 273.428 416.224 0.739 -0.703 -1.696 H20 P9N 43 P9N H21 H21 H 0 1 N N N 66.195 272.675 414.501 2.253 -2.398 0.366 H21 P9N 44 P9N H22 H22 H 0 1 N N N 65.757 274.270 415.204 1.740 -2.872 -1.287 H22 P9N 45 P9N H23 H23 H 0 1 N N N 67.341 272.225 416.468 4.259 -1.830 -0.728 H23 P9N 46 P9N H24 H24 H 0 1 N N N 66.671 273.693 417.256 3.450 -1.627 -2.308 H24 P9N 47 P9N H25 H25 H 0 1 N N N 64.843 272.587 418.111 3.229 0.634 -1.936 H25 P9N 48 P9N H26 H26 H 0 1 N N N 65.135 269.355 416.201 1.328 0.173 1.846 H26 P9N 49 P9N H27 H27 H 0 1 N N N 64.429 270.019 414.689 2.773 -0.802 1.482 H27 P9N 50 P9N H28 H28 H 0 1 N N N 66.062 270.543 415.223 2.906 0.967 1.627 H28 P9N 51 P9N H29 H29 H 0 1 N N N 61.309 269.980 413.172 -0.984 -0.809 2.630 H29 P9N 52 P9N H30 H30 H 0 1 N N N 60.542 270.904 411.836 -0.929 0.962 2.793 H30 P9N 53 P9N H31 H31 H 0 1 N N N 62.276 271.162 412.227 -2.409 0.074 3.227 H31 P9N 54 P9N H32 H32 H 0 1 N N N 65.722 269.285 419.740 4.345 2.581 0.545 H32 P9N 55 P9N H33 H33 H 0 1 N N N 64.516 270.614 419.799 5.945 2.106 -0.072 H33 P9N 56 P9N H34 H34 H 0 1 N N N 64.474 269.422 418.456 4.617 2.441 -1.208 H34 P9N 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P9N C06 C05 SING N N 1 P9N C06 C07 SING N N 2 P9N C19 C10 SING N N 3 P9N C05 C10 SING N N 4 P9N C05 C04 SING N N 5 P9N C07 C08 SING N N 6 P9N C10 C01 SING N N 7 P9N C10 C09 SING N N 8 P9N C04 C03 SING N N 9 P9N C01 C02 SING N N 10 P9N C03 C02 SING N N 11 P9N C03 O01 SING N N 12 P9N C08 C09 SING N N 13 P9N C08 C14 SING N N 14 P9N C09 C11 SING N N 15 P9N C15 C14 SING N N 16 P9N C15 C16 SING N N 17 P9N C14 C13 SING N N 18 P9N C18 C13 SING N N 19 P9N C11 C12 SING N N 20 P9N C13 C12 SING N N 21 P9N C13 C17 SING N N 22 P9N C16 C17 SING N N 23 P9N C17 C20 SING N N 24 P9N C20 O02 DOUB N N 25 P9N C20 C21 SING N N 26 P9N C01 H1 SING N N 27 P9N C01 H2 SING N N 28 P9N O01 H3 SING N N 29 P9N C02 H4 SING N N 30 P9N C02 H5 SING N N 31 P9N C03 H6 SING N N 32 P9N C04 H7 SING N N 33 P9N C04 H8 SING N N 34 P9N C05 H9 SING N N 35 P9N C06 H10 SING N N 36 P9N C06 H11 SING N N 37 P9N C07 H12 SING N N 38 P9N C07 H13 SING N N 39 P9N C08 H14 SING N N 40 P9N C09 H15 SING N N 41 P9N C11 H16 SING N N 42 P9N C11 H17 SING N N 43 P9N C12 H18 SING N N 44 P9N C12 H19 SING N N 45 P9N C14 H20 SING N N 46 P9N C15 H21 SING N N 47 P9N C15 H22 SING N N 48 P9N C16 H23 SING N N 49 P9N C16 H24 SING N N 50 P9N C17 H25 SING N N 51 P9N C18 H26 SING N N 52 P9N C18 H27 SING N N 53 P9N C18 H28 SING N N 54 P9N C19 H29 SING N N 55 P9N C19 H30 SING N N 56 P9N C19 H31 SING N N 57 P9N C21 H32 SING N N 58 P9N C21 H33 SING N N 59 P9N C21 H34 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P9N InChI InChI 1.03 "InChI=1S/C21H34O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h14-19,23H,4-12H2,1-3H3/t14-,15-,16+,17-,18+,19+,20+,21-/m1/s1" P9N InChIKey InChI 1.03 AURFZBICLPNKBZ-YZRLXODZSA-N P9N SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@H]1CC[C@H]2[C@@H]3CC[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@]12C" P9N SMILES CACTVS 3.385 "CC(=O)[CH]1CC[CH]2[CH]3CC[CH]4C[CH](O)CC[C]4(C)[CH]3CC[C]12C" P9N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC[C@H]4[C@@]3(CC[C@H](C4)O)C)C" P9N SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)C1CCC2C1(CCC3C2CCC4C3(CCC(C4)O)C)C" # _pdbx_chem_comp_identifier.comp_id P9N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "1-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{S},14~{S},17~{S})-10,13-dimethyl-3-oxidanyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]ethanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P9N "Create component" 2017-10-22 EBI P9N "Initial release" 2017-11-01 RCSB P9N "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id P9N _pdbx_chem_comp_synonyms.name "(3alpha,5beta)-3-Hydroxypregnan-20-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##