data_P9V # _chem_comp.id P9V _chem_comp.name "(2R,3S,4S,5R)-2-[2-(methylsulfanyl)ethyl]piperidine-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-06 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 207.290 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P9V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Q1N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P9V C1 C1 C 0 1 N N N -44.802 39.647 -3.524 -5.031 0.912 0.035 C1 P9V 1 P9V C3 C2 C 0 1 N N R -42.271 40.665 -5.384 0.210 0.030 -0.438 C3 P9V 2 P9V C4 C3 C 0 1 N N S -41.996 41.697 -6.506 1.317 -1.019 -0.557 C4 P9V 3 P9V C5 C4 C 0 1 N N S -41.015 40.929 -7.422 2.660 -0.315 -0.774 C5 P9V 4 P9V C6 C5 C 0 1 N N R -39.762 40.539 -6.622 2.917 0.647 0.389 C6 P9V 5 P9V C7 C6 C 0 1 N N N -40.171 39.665 -5.464 1.763 1.648 0.480 C7 P9V 6 P9V C16 C7 C 0 1 N N N -42.877 39.364 -5.987 -1.130 -0.668 -0.200 C16 P9V 7 P9V C17 C8 C 0 1 N N N -44.337 39.290 -6.432 -2.255 0.370 -0.206 C17 P9V 8 P9V N2 N1 N 0 1 N N N -41.108 40.339 -4.555 0.502 0.926 0.689 N2 P9V 9 P9V O10 O1 O 0 1 N N N -38.941 39.721 -7.461 3.006 -0.091 1.609 O10 P9V 10 P9V O12 O2 O 0 1 N N N -43.173 42.075 -7.227 1.373 -1.793 0.643 O12 P9V 11 P9V O8 O3 O 0 1 N N N -40.638 41.699 -8.570 2.621 0.417 -2.001 O8 P9V 12 P9V S18 S1 S 0 1 N N N -45.513 38.949 -5.048 -3.844 -0.458 0.076 S18 P9V 13 P9V H1 H1 H 0 1 N N N -45.483 39.458 -2.681 -6.038 0.526 0.196 H1 P9V 14 P9V H2 H2 H 0 1 N N N -43.830 39.174 -3.323 -4.787 1.628 0.819 H2 P9V 15 P9V H3 H3 H 0 1 N N N -44.663 40.731 -3.647 -4.983 1.406 -0.936 H3 P9V 16 P9V H4 H4 H 0 1 N N N -43.041 41.101 -4.730 0.159 0.610 -1.359 H4 P9V 17 P9V H5 H5 H 0 1 N N N -41.491 42.576 -6.081 1.109 -1.674 -1.403 H5 P9V 18 P9V H6 H6 H 0 1 N N N -41.512 40.004 -7.750 3.457 -1.057 -0.817 H6 P9V 19 P9V H7 H7 H 0 1 N N N -39.232 41.437 -6.271 3.850 1.183 0.218 H7 P9V 20 P9V H8 H8 H 0 1 N N N -40.653 38.758 -5.859 1.936 2.326 1.316 H8 P9V 21 P9V H9 H9 H 0 1 N N N -39.270 39.385 -4.898 1.704 2.221 -0.445 H9 P9V 22 P9V H10 H10 H 0 1 N N N -42.745 38.580 -5.227 -1.305 -1.398 -0.990 H10 P9V 23 P9V H11 H11 H 0 1 N N N -42.271 39.122 -6.872 -1.110 -1.176 0.765 H11 P9V 24 P9V H12 H12 H 0 1 N N N -44.610 40.251 -6.892 -2.080 1.099 0.585 H12 P9V 25 P9V H13 H13 H 0 1 N N N -44.434 38.486 -7.177 -2.275 0.877 -1.171 H13 P9V 26 P9V H14 H14 H 0 1 N N N -41.370 39.731 -3.806 0.516 0.418 1.561 H14 P9V 27 P9V H16 H16 H 0 1 N N N -38.158 39.466 -6.987 3.168 0.456 2.389 H16 P9V 28 P9V H17 H17 H 0 1 N N N -43.762 42.545 -6.648 2.054 -2.479 0.638 H17 P9V 29 P9V H18 H18 H 0 1 N N N -41.415 41.938 -9.061 3.439 0.893 -2.200 H18 P9V 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P9V O8 C5 SING N N 1 P9V O10 C6 SING N N 2 P9V C5 C6 SING N N 3 P9V C5 C4 SING N N 4 P9V O12 C4 SING N N 5 P9V C6 C7 SING N N 6 P9V C4 C3 SING N N 7 P9V C17 C16 SING N N 8 P9V C17 S18 SING N N 9 P9V C16 C3 SING N N 10 P9V C7 N2 SING N N 11 P9V C3 N2 SING N N 12 P9V S18 C1 SING N N 13 P9V C1 H1 SING N N 14 P9V C1 H2 SING N N 15 P9V C1 H3 SING N N 16 P9V C3 H4 SING N N 17 P9V C4 H5 SING N N 18 P9V C5 H6 SING N N 19 P9V C6 H7 SING N N 20 P9V C7 H8 SING N N 21 P9V C7 H9 SING N N 22 P9V C16 H10 SING N N 23 P9V C16 H11 SING N N 24 P9V C17 H12 SING N N 25 P9V C17 H13 SING N N 26 P9V N2 H14 SING N N 27 P9V O10 H16 SING N N 28 P9V O12 H17 SING N N 29 P9V O8 H18 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P9V SMILES ACDLabs 12.01 "CSCCC1NCC(C(C1O)O)O" P9V InChI InChI 1.03 "InChI=1S/C8H17NO3S/c1-13-3-2-5-7(11)8(12)6(10)4-9-5/h5-12H,2-4H2,1H3/t5-,6-,7+,8+/m1/s1" P9V InChIKey InChI 1.03 ZTGUKWHBLOJEPU-NGJRWZKOSA-N P9V SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H]1NC[C@@H](O)[C@H](O)[C@H]1O" P9V SMILES CACTVS 3.385 "CSCC[CH]1NC[CH](O)[CH](O)[CH]1O" P9V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSCC[C@@H]1[C@@H]([C@H]([C@@H](CN1)O)O)O" P9V SMILES "OpenEye OEToolkits" 2.0.7 "CSCCC1C(C(C(CN1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P9V "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4S,5R)-2-[2-(methylsulfanyl)ethyl]piperidine-3,4,5-triol" P9V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{S},5~{R})-2-(2-methylsulfanylethyl)piperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P9V "Create component" 2019-08-06 RCSB P9V "Initial release" 2020-08-19 RCSB ##