data_PB6 # _chem_comp.id PB6 _chem_comp.name "3-[(1E)-but-1-en-1-yl]-1-(2,2-diphosphonoethyl)pyridinium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N O6 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2009-07-31 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PB6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ICZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PB6 C7 C7 C 0 1 N N N 9.490 18.387 151.578 -0.998 -1.205 -0.704 C7 PB6 1 PB6 C8 C8 C 0 1 N N N 8.652 18.372 150.275 -1.786 -0.345 0.287 C8 PB6 2 PB6 P9 P9 P 0 1 N N N 6.979 17.874 150.797 -1.081 1.336 0.326 P9 PB6 3 PB6 O10 O10 O 0 1 N N N 7.090 16.518 151.431 0.460 1.261 0.786 O10 PB6 4 PB6 O11 O11 O 0 1 N N N 6.517 18.951 151.692 -1.165 1.937 -1.024 O11 PB6 5 PB6 N12 N12 N 1 1 Y N N 10.960 18.636 151.356 0.368 -1.394 -0.210 N12 PB6 6 PB6 O12 O12 O 0 1 N N N 6.145 17.776 149.533 -1.910 2.240 1.369 O12 PB6 7 PB6 C13 C13 C 0 1 Y N N 11.675 18.274 150.240 0.600 -2.331 0.689 C13 PB6 8 PB6 C14 C14 C 0 1 Y N N 13.042 18.618 150.168 1.874 -2.545 1.184 C14 PB6 9 PB6 P14 P14 P 0 1 N N N 8.650 19.996 149.430 -3.530 -0.261 -0.234 P14 PB6 10 PB6 C15 C15 C 0 1 Y N N 13.668 19.325 151.236 2.919 -1.761 0.727 C15 PB6 11 PB6 O15 O15 O 0 1 N N N 8.326 21.000 150.513 -4.155 -1.745 -0.259 O15 PB6 12 PB6 C16 C16 C 0 1 Y N N 12.892 19.672 152.370 2.641 -0.775 -0.226 C16 PB6 13 PB6 O16 O16 O 0 1 N N N 7.739 19.827 148.213 -4.357 0.651 0.804 O16 PB6 14 PB6 C17 C17 C 0 1 Y N N 11.549 19.323 152.341 1.330 -0.626 -0.679 C17 PB6 15 PB6 O17 O17 O 0 1 N N N 10.044 20.336 148.980 -3.614 0.332 -1.587 O17 PB6 16 PB6 C18 C18 C 0 1 N N N 13.318 20.456 153.584 3.719 0.091 -0.748 C18 PB6 17 PB6 C19 C19 C 0 1 N N N 14.564 20.891 153.719 4.962 -0.064 -0.313 C19 PB6 18 PB6 C20 C20 C 0 1 N N N 15.123 21.684 154.897 6.061 0.819 -0.846 C20 PB6 19 PB6 C21 C21 C 0 1 N N N 14.086 22.017 155.948 6.775 1.505 0.321 C21 PB6 20 PB6 H7 H7 H 0 1 N N N 9.102 19.190 152.223 -1.484 -2.175 -0.809 H7 PB6 21 PB6 H7A H7A H 0 1 N N N 9.381 17.406 152.064 -0.969 -0.707 -1.673 H7A PB6 22 PB6 H8 H8 H 0 1 N N N 9.074 17.678 149.533 -1.724 -0.789 1.281 H8 PB6 23 PB6 H13 H13 H 0 1 N N N 11.200 17.736 149.433 -0.217 -2.941 1.043 H13 PB6 24 PB6 H14 H14 H 0 1 N N N 13.618 18.343 149.297 2.051 -3.316 1.920 H14 PB6 25 PB6 H15 H15 H 0 1 N N N 14.713 19.591 151.182 3.923 -1.906 1.097 H15 PB6 26 PB6 H17 H17 H 0 1 N N N 10.934 19.629 153.175 1.101 0.128 -1.417 H17 PB6 27 PB6 H18 H18 H 0 1 N N N 12.596 20.668 154.359 3.494 0.849 -1.483 H18 PB6 28 PB6 H19 H19 H 0 1 N N N 15.250 20.662 152.917 5.187 -0.822 0.422 H19 PB6 29 PB6 H20 H20 H 0 1 N N N 15.911 21.081 155.372 6.776 0.213 -1.403 H20 PB6 30 PB6 H20A H20A H 0 0 N N N 15.534 22.628 154.510 5.634 1.575 -1.505 H20A PB6 31 PB6 H21 H21 H 0 1 N N N 14.558 22.586 156.762 7.570 2.143 -0.064 H21 PB6 32 PB6 H21A H21A H 0 0 N N N 13.286 22.621 155.495 6.060 2.111 0.878 H21A PB6 33 PB6 H21B H21B H 0 0 N N N 13.660 21.086 156.350 7.202 0.749 0.980 H21B PB6 34 PB6 H151 H151 H 0 0 N N N 6.834 16.573 152.344 0.590 0.877 1.663 H151 PB6 35 PB6 H16 H16 H 0 1 N N N 5.465 18.439 149.550 -1.589 3.150 1.442 H16 PB6 36 PB6 H171 H171 H 0 0 N N N 9.066 21.582 150.637 -3.768 -2.323 -0.930 H171 PB6 37 PB6 H181 H181 H 0 0 N N N 8.240 19.972 147.419 -4.035 1.561 0.871 H181 PB6 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PB6 C7 C8 SING N N 1 PB6 C7 N12 SING N N 2 PB6 C7 H7 SING N N 3 PB6 C7 H7A SING N N 4 PB6 C8 P9 SING N N 5 PB6 C8 P14 SING N N 6 PB6 C8 H8 SING N N 7 PB6 P9 O10 SING N N 8 PB6 P9 O11 DOUB N N 9 PB6 P9 O12 SING N N 10 PB6 N12 C13 DOUB Y N 11 PB6 N12 C17 SING Y N 12 PB6 C13 C14 SING Y N 13 PB6 C13 H13 SING N N 14 PB6 C14 C15 DOUB Y N 15 PB6 C14 H14 SING N N 16 PB6 P14 O15 SING N N 17 PB6 P14 O16 SING N N 18 PB6 P14 O17 DOUB N N 19 PB6 C15 C16 SING Y N 20 PB6 C15 H15 SING N N 21 PB6 C16 C17 DOUB Y N 22 PB6 C16 C18 SING N N 23 PB6 C17 H17 SING N N 24 PB6 C18 C19 DOUB N N 25 PB6 C18 H18 SING N N 26 PB6 C19 C20 SING N N 27 PB6 C19 H19 SING N N 28 PB6 C20 C21 SING N E 29 PB6 C20 H20 SING N N 30 PB6 C20 H20A SING N N 31 PB6 C21 H21 SING N N 32 PB6 C21 H21A SING N N 33 PB6 C21 H21B SING N N 34 PB6 O10 H151 SING N N 35 PB6 O12 H16 SING N N 36 PB6 O15 H171 SING N N 37 PB6 O16 H181 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PB6 SMILES ACDLabs 11.02 "O=P(O)(O)C(P(=O)(O)O)C[n+]1cccc(/C=C/CC)c1" PB6 SMILES_CANONICAL CACTVS 3.352 "CC/C=C/c1ccc[n+](CC([P](O)(O)=O)[P](O)(O)=O)c1" PB6 SMILES CACTVS 3.352 "CCC=Cc1ccc[n+](CC([P](O)(O)=O)[P](O)(O)=O)c1" PB6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC/C=C/c1ccc[n+](c1)CC(P(=O)(O)O)P(=O)(O)O" PB6 SMILES "OpenEye OEToolkits" 1.7.0 "CCC=Cc1ccc[n+](c1)CC(P(=O)(O)O)P(=O)(O)O" PB6 InChI InChI 1.03 "InChI=1S/C11H17NO6P2/c1-2-3-5-10-6-4-7-12(8-10)9-11(19(13,14)15)20(16,17)18/h3-8,11H,2,9H2,1H3,(H3-,13,14,15,16,17,18)/p+1/b5-3+" PB6 InChIKey InChI 1.03 QYIWBGUVYSKCTG-HWKANZROSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PB6 "SYSTEMATIC NAME" ACDLabs 11.02 "3-[(1E)-but-1-en-1-yl]-1-(2,2-diphosphonoethyl)pyridinium" PB6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[2-[3-[(E)-but-1-enyl]pyridin-1-ium-1-yl]-1-phosphono-ethyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PB6 "Create component" 2009-07-31 RCSB PB6 "Modify aromatic_flag" 2011-06-04 RCSB PB6 "Modify descriptor" 2011-06-04 RCSB #