data_PGS # _chem_comp.id PGS _chem_comp.name ;2-DEAZO-6-THIOPHOSPHATE GUANOSINE-5'-MONOPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N4 O10 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces SPG _chem_comp.formula_weight 445.259 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KSZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PGS PA PA P 0 1 N N N -16.353 54.748 50.030 -5.938 -1.569 0.064 PA PGS 1 PGS O1A O1A O 0 1 N N N -16.366 55.621 48.856 -5.231 -2.436 -0.904 O1A PGS 2 PGS O2A O2A O 0 1 N N N -17.675 54.733 50.663 -6.541 -2.472 1.253 O2A PGS 3 PGS O3A O3A O 0 1 N N N -15.946 53.403 49.654 -7.137 -0.796 -0.683 O3A PGS 4 PGS "O5'" O5* O 0 1 N N N -15.303 55.308 51.056 -4.906 -0.496 0.676 "O5'" PGS 5 PGS "C5'" C5* C 0 1 N N N -15.477 55.136 52.349 -4.320 0.192 -0.431 "C5'" PGS 6 PGS "C4'" C4* C 0 1 N N R -14.207 54.911 52.821 -3.323 1.232 0.084 "C4'" PGS 7 PGS "O4'" O4* O 0 1 N N N -13.830 53.826 51.987 -2.202 0.576 0.700 "O4'" PGS 8 PGS "C3'" C3* C 0 1 N N S -13.313 56.132 52.747 -2.778 2.064 -1.093 "C3'" PGS 9 PGS "O3'" O3* O 0 1 N N N -12.428 56.111 53.870 -3.094 3.446 -0.917 "O3'" PGS 10 PGS "C2'" C2* C 0 1 N N R -12.436 55.553 51.660 -1.247 1.846 -1.038 "C2'" PGS 11 PGS "O2'" O2* O 0 1 N N N -11.061 55.939 51.698 -0.547 3.065 -1.298 "O2'" PGS 12 PGS "C1'" C1* C 0 1 N N R -12.470 54.039 51.826 -1.039 1.389 0.432 "C1'" PGS 13 PGS N9 N9 N 0 1 Y N N -12.108 53.508 50.591 0.186 0.596 0.560 N9 PGS 14 PGS C8 C8 C 0 1 Y N N -12.928 53.017 49.570 0.287 -0.758 0.438 C8 PGS 15 PGS N7 N7 N 0 1 Y N N -12.287 52.335 48.677 1.522 -1.129 0.611 N7 PGS 16 PGS C5 C5 C 0 1 Y N N -10.952 52.372 49.107 2.290 -0.040 0.855 C5 PGS 17 PGS C6 C6 C 0 1 Y N N -9.822 51.795 48.501 3.657 0.169 1.110 C6 PGS 18 PGS S6 S6 S 0 1 N N N -9.722 50.988 46.878 4.782 -1.186 1.162 S6 PGS 19 PGS P P P 0 1 N N N -8.830 49.391 46.610 5.367 -1.257 -0.874 P PGS 20 PGS O1P O1P O 0 1 N N N -9.890 48.405 46.228 4.177 -1.496 -1.721 O1P PGS 21 PGS O2P O2P O 0 1 N N N -8.144 49.013 47.893 6.047 0.142 -1.286 O2P PGS 22 PGS O3P O3P O 0 1 N N N -7.841 49.515 45.518 6.425 -2.452 -1.087 O3P PGS 23 PGS N1 N1 N 1 1 Y N N -8.673 52.014 49.241 4.080 1.414 1.311 N1 PGS 24 PGS C2 C2 C 0 1 Y N N -8.631 52.759 50.393 3.245 2.435 1.273 C2 PGS 25 PGS N3 N3 N 0 1 Y N N -9.704 53.321 50.957 1.958 2.287 1.038 N3 PGS 26 PGS C4 C4 C 0 1 Y N N -10.828 53.075 50.261 1.443 1.081 0.820 C4 PGS 27 PGS HOA2 2HOA H 0 0 N N N -17.666 54.166 51.425 -7.153 -3.100 0.844 HOA2 PGS 28 PGS HOA3 3HOA H 0 0 N N N -15.937 52.836 50.416 -7.570 -0.243 -0.018 HOA3 PGS 29 PGS "H5'1" 1H5* H 0 0 N N N -16.084 54.252 52.552 -5.101 0.690 -1.004 "H5'1" PGS 30 PGS "H5'2" 2H5* H 0 0 N N N -15.877 55.969 52.906 -3.801 -0.524 -1.069 "H5'2" PGS 31 PGS "H4'" H4* H 0 1 N N N -14.261 54.576 53.857 -3.811 1.887 0.806 "H4'" PGS 32 PGS "H3'" H3* H 0 1 N N N -13.758 57.104 52.585 -3.182 1.699 -2.037 "H3'" PGS 33 PGS "HO3'" *HO3 H 0 0 N N N -12.950 56.029 54.678 -2.704 3.919 -1.665 "HO3'" PGS 34 PGS "H2'" H2* H 0 1 N N N -12.871 55.857 50.711 -0.938 1.067 -1.735 "H2'" PGS 35 PGS "HO2'" *HO2 H 0 0 N N N -10.574 55.156 51.418 -0.716 3.293 -2.222 "HO2'" PGS 36 PGS "H1'" H1* H 0 1 N N N -11.858 53.695 52.663 -1.010 2.250 1.101 "H1'" PGS 37 PGS H8 H8 H 0 1 N N N -14.006 53.158 49.542 -0.537 -1.424 0.229 H8 PGS 38 PGS HOP2 2HOP H 0 0 N N N -7.685 48.192 47.755 6.816 0.259 -0.712 HOP2 PGS 39 PGS HOP3 3HOP H 0 0 N N N -7.382 48.694 45.380 6.665 -2.449 -2.024 HOP3 PGS 40 PGS HN1 HN1 H 0 1 N N N -7.793 51.621 48.932 5.020 1.574 1.488 HN1 PGS 41 PGS H2 H2 H 0 1 N N N -7.665 52.917 50.902 3.631 3.429 1.441 H2 PGS 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PGS PA O1A DOUB N N 1 PGS PA O2A SING N N 2 PGS PA O3A SING N N 3 PGS PA "O5'" SING N N 4 PGS O2A HOA2 SING N N 5 PGS O3A HOA3 SING N N 6 PGS "O5'" "C5'" SING N N 7 PGS "C5'" "C4'" SING N N 8 PGS "C5'" "H5'1" SING N N 9 PGS "C5'" "H5'2" SING N N 10 PGS "C4'" "O4'" SING N N 11 PGS "C4'" "C3'" SING N N 12 PGS "C4'" "H4'" SING N N 13 PGS "O4'" "C1'" SING N N 14 PGS "C3'" "O3'" SING N N 15 PGS "C3'" "C2'" SING N N 16 PGS "C3'" "H3'" SING N N 17 PGS "O3'" "HO3'" SING N N 18 PGS "C2'" "O2'" SING N N 19 PGS "C2'" "C1'" SING N N 20 PGS "C2'" "H2'" SING N N 21 PGS "O2'" "HO2'" SING N N 22 PGS "C1'" N9 SING N N 23 PGS "C1'" "H1'" SING N N 24 PGS N9 C8 SING Y N 25 PGS N9 C4 SING Y N 26 PGS C8 N7 DOUB Y N 27 PGS C8 H8 SING N N 28 PGS N7 C5 SING Y N 29 PGS C5 C6 SING Y N 30 PGS C5 C4 DOUB Y N 31 PGS C6 S6 SING N N 32 PGS C6 N1 DOUB Y N 33 PGS S6 P SING N N 34 PGS P O1P DOUB N N 35 PGS P O2P SING N N 36 PGS P O3P SING N N 37 PGS O2P HOP2 SING N N 38 PGS O3P HOP3 SING N N 39 PGS N1 C2 SING Y N 40 PGS N1 HN1 SING N N 41 PGS C2 N3 DOUB Y N 42 PGS C2 H2 SING N N 43 PGS N3 C4 SING Y N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PGS SMILES ACDLabs 10.04 "O=P(O)(O)Sc1c2ncn(c2nc[nH+]1)C3OC(C(O)C3O)COP(=O)(O)O" PGS SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]1O)n2cnc3c(S[P](O)(O)=O)[nH+]cnc23" PGS SMILES CACTVS 3.341 "O[CH]1[CH](CO[P](O)(O)=O)O[CH]([CH]1O)n2cnc3c(S[P](O)(O)=O)[nH+]cnc23" PGS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1[nH+]c(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)SP(=O)(O)O" PGS SMILES "OpenEye OEToolkits" 1.5.0 "c1[nH+]c(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)SP(=O)(O)O" PGS InChI InChI 1.03 "InChI=1S/C10H14N4O10P2S/c15-6-4(1-23-25(17,18)19)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)27-26(20,21)22/h2-4,6-7,10,15-16H,1H2,(H2,17,18,19)(H2,20,21,22)/p+1/t4-,6-,7-,10-/m1/s1" PGS InChIKey InChI 1.03 NYBPOGVUIOPXHI-KQYNXXCUSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PGS "SYSTEMATIC NAME" ACDLabs 10.04 "9-(5-O-phosphono-beta-D-ribofuranosyl)-6-(phosphonosulfanyl)-9H-purin-1-ium" PGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]purin-1-ium-6-yl]sulfanylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PGS "Create component" 1999-07-08 RCSB PGS "Modify descriptor" 2011-06-04 RCSB #