data_PM3 # _chem_comp.id PM3 _chem_comp.name "2-AMINO-3-(4-PHOSPHONOMETHYL-PHENYL)-PROPIONIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H14 N O5 P" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-05-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.196 _chem_comp.one_letter_code F _chem_comp.three_letter_code PM3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2GV2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PM3 N N N 0 1 N N N Y Y N 13.515 18.502 13.614 3.477 1.441 0.809 N PM3 1 PM3 CA CA C 0 1 N N S Y N N 12.331 18.317 14.445 3.610 0.041 0.383 CA PM3 2 PM3 CB CB C 0 1 N N N N N N 11.615 19.654 14.660 2.627 -0.242 -0.754 CB PM3 3 PM3 CG CG C 0 1 Y N N N N N 12.332 20.621 15.568 1.216 -0.114 -0.242 CG PM3 4 PM3 CD1 CD1 C 0 1 Y N N N N N 12.657 21.905 15.132 0.566 -1.218 0.277 CD1 PM3 5 PM3 CE1 CE1 C 0 1 Y N N N N N 13.270 22.819 15.986 -0.727 -1.100 0.751 CE1 PM3 6 PM3 CD2 CD2 C 0 1 Y N N N N N 12.641 20.270 16.878 0.569 1.106 -0.297 CD2 PM3 7 PM3 CE2 CE2 C 0 1 Y N N N N N 13.256 21.171 17.738 -0.726 1.224 0.173 CE2 PM3 8 PM3 CZ CZ C 0 1 Y N N N N N 13.565 22.442 17.288 -1.374 0.121 0.698 CZ PM3 9 PM3 CH4 CH4 C 0 1 N N N N N N 14.234 23.420 18.222 -2.785 0.249 1.210 CH4 PM3 10 PM3 P P P 0 1 N N N N N N 16.011 23.505 18.208 -3.957 -0.087 -0.145 P PM3 11 PM3 O1 O1 O 0 1 N N N N N N 16.476 22.129 18.520 -5.460 -0.079 0.431 O1 PM3 12 PM3 O2 O2 O 0 1 N N N N N N 16.353 23.943 16.833 -3.662 -1.412 -0.735 O2 PM3 13 PM3 O3 O3 O 0 1 N N N N N N 16.374 24.498 19.246 -3.810 1.049 -1.276 O3 PM3 14 PM3 C C C 0 1 N N N Y N Y 11.352 17.357 13.780 5.018 -0.207 -0.096 C PM3 15 PM3 OXT OXT O 0 1 N Y N Y N Y 10.818 16.447 14.410 5.497 -1.459 -0.153 OXT PM3 16 PM3 O O O 0 1 N N N Y N Y 11.114 17.586 12.495 5.715 0.722 -0.428 O PM3 17 PM3 H H H 0 1 N N N Y Y N 13.972 19.354 13.870 3.687 2.010 0.003 H PM3 18 PM3 H2 H2 H 0 1 N Y N Y Y N 13.244 18.544 12.652 2.502 1.588 1.021 H2 PM3 19 PM3 HA HA H 0 1 N N N Y N N 12.663 17.905 15.409 3.392 -0.617 1.225 HA PM3 20 PM3 HB2 HB2 H 0 1 N N N N N N 10.658 19.419 15.149 2.788 0.474 -1.560 HB2 PM3 21 PM3 HB3 HB3 H 0 1 N N N N N N 11.506 20.136 13.677 2.787 -1.253 -1.129 HB3 PM3 22 PM3 HD1 HD1 H 0 1 N N N N N N 12.430 22.195 14.117 1.071 -2.172 0.319 HD1 PM3 23 PM3 HE1 HE1 H 0 1 N N N N N N 13.513 23.812 15.638 -1.234 -1.961 1.160 HE1 PM3 24 PM3 HD2 HD2 H 0 1 N N N N N N 12.398 19.279 17.233 1.075 1.968 -0.706 HD2 PM3 25 PM3 HE2 HE2 H 0 1 N N N N N N 13.491 20.881 18.751 -1.231 2.178 0.131 HE2 PM3 26 PM3 HH42 HH42 H 0 0 N N N N N N 13.978 23.064 19.231 -2.945 -0.467 2.016 HH42 PM3 27 PM3 HH43 HH43 H 0 0 N N N N N N 13.867 24.420 17.949 -2.944 1.260 1.586 HH43 PM3 28 PM3 HO1 HO1 H 0 1 N N N N N N 16.575 21.637 17.713 -6.047 -0.261 -0.316 HO1 PM3 29 PM3 HO3 HO3 H 0 1 N N N N N N 16.452 24.063 20.087 -4.010 1.894 -0.851 HO3 PM3 30 PM3 HXT HO H 0 1 N Y N Y N Y 10.235 15.964 13.837 6.400 -1.618 -0.460 HO PM3 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PM3 N CA SING N N 1 PM3 N H SING N N 2 PM3 N H2 SING N N 3 PM3 CA CB SING N N 4 PM3 CA C SING N N 5 PM3 CA HA SING N N 6 PM3 CB CG SING N N 7 PM3 CB HB2 SING N N 8 PM3 CB HB3 SING N N 9 PM3 CG CD1 SING Y N 10 PM3 CG CD2 DOUB Y N 11 PM3 CD1 CE1 DOUB Y N 12 PM3 CD1 HD1 SING N N 13 PM3 CE1 CZ SING Y N 14 PM3 CE1 HE1 SING N N 15 PM3 CD2 CE2 SING Y N 16 PM3 CD2 HD2 SING N N 17 PM3 CE2 CZ DOUB Y N 18 PM3 CE2 HE2 SING N N 19 PM3 CZ CH4 SING N N 20 PM3 CH4 P SING N N 21 PM3 CH4 HH42 SING N N 22 PM3 CH4 HH43 SING N N 23 PM3 P O1 SING N N 24 PM3 P O2 DOUB N N 25 PM3 P O3 SING N N 26 PM3 O1 HO1 SING N N 27 PM3 O3 HO3 SING N N 28 PM3 C OXT SING N N 29 PM3 C O DOUB N N 30 PM3 OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PM3 SMILES ACDLabs 10.04 "O=C(O)C(N)Cc1ccc(cc1)CP(=O)(O)O" PM3 SMILES_CANONICAL CACTVS 3.341 "N[C@@H](Cc1ccc(C[P](O)(O)=O)cc1)C(O)=O" PM3 SMILES CACTVS 3.341 "N[CH](Cc1ccc(C[P](O)(O)=O)cc1)C(O)=O" PM3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[C@@H](C(=O)O)N)CP(=O)(O)O" PM3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CC(C(=O)O)N)CP(=O)(O)O" PM3 InChI InChI 1.03 "InChI=1S/C10H14NO5P/c11-9(10(12)13)5-7-1-3-8(4-2-7)6-17(14,15)16/h1-4,9H,5-6,11H2,(H,12,13)(H2,14,15,16)/t9-/m0/s1" PM3 InChIKey InChI 1.03 SAQLLHDEEMZENJ-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PM3 "SYSTEMATIC NAME" ACDLabs 10.04 "4-(phosphonomethyl)-L-phenylalanine" PM3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-[4-(phosphonomethyl)phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PM3 "Create component" 2006-05-03 RCSB PM3 "Modify descriptor" 2011-06-04 RCSB PM3 "Modify backbone" 2023-11-03 PDBE PM3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PM3 _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #