data_PNJ # _chem_comp.id PNJ _chem_comp.name "4-nitrophenyl 2-amino-2-deoxy-beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H16 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;PNP-BETA-D-GLUCOSAMINE; 4-nitrophenyl 2-amino-2-deoxy-beta-D-glucoside; 4-nitrophenyl 2-amino-2-deoxy-D-glucoside; 4-nitrophenyl 2-amino-2-deoxy-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-08-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 300.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PNJ PNP-BETA-D-GLUCOSAMINE PDB ? 2 PNJ "4-nitrophenyl 2-amino-2-deoxy-beta-D-glucoside" PDB ? 3 PNJ "4-nitrophenyl 2-amino-2-deoxy-D-glucoside" PDB ? 4 PNJ "4-nitrophenyl 2-amino-2-deoxy-glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNJ C1 C1 C 0 1 N N S 50.836 40.612 71.124 1.146 0.810 -0.111 C1 PNJ 1 PNJ C2 C2 C 0 1 N N R 50.150 40.749 72.511 2.466 1.557 0.096 C2 PNJ 2 PNJ C4 C4 C 0 1 N N S 49.681 43.127 71.880 3.615 -0.656 0.172 C4 PNJ 3 PNJ C5 C5 C 0 1 N N R 50.072 42.747 70.424 2.250 -1.317 -0.038 C5 PNJ 4 PNJ C6 C6 C 0 1 N N N 50.480 43.903 69.472 2.226 -2.673 0.671 C6 PNJ 5 PNJ C7 C7 C 0 1 Y N N 52.934 39.681 70.459 -1.181 1.079 0.299 C7 PNJ 6 PNJ C8 C8 C 0 1 Y N N 52.534 39.705 69.126 -2.263 1.751 0.848 C8 PNJ 7 PNJ C9 C9 C 0 1 Y N N 53.416 39.370 68.123 -3.543 1.267 0.660 C9 PNJ 8 PNJ C10 C10 C 0 1 Y N N 54.707 38.995 68.442 -3.746 0.113 -0.075 C10 PNJ 9 PNJ C11 C11 C 0 1 Y N N 55.134 38.966 69.781 -2.668 -0.559 -0.622 C11 PNJ 10 PNJ C12 C12 C 0 1 Y N N 54.243 39.303 70.801 -1.387 -0.075 -0.443 C12 PNJ 11 PNJ N1 N1 N 1 1 N N N 55.544 38.678 67.430 -5.118 -0.404 -0.275 N1 PNJ 12 PNJ O1 O1 O 0 1 N N N 52.076 40.023 71.447 0.080 1.554 0.483 O1 PNJ 13 PNJ O3 O3 O 0 1 N N N 48.733 42.210 73.885 4.856 1.380 -0.236 O3 PNJ 14 PNJ O4 O4 O 0 1 N N N 48.753 44.157 71.880 4.634 -1.465 -0.419 O4 PNJ 15 PNJ C3 C3 C 0 1 N N R 49.082 41.875 72.557 3.611 0.725 -0.490 C3 PNJ 16 PNJ O5 O5 O 0 1 N N N 51.190 41.876 70.591 1.228 -0.478 0.502 O5 PNJ 17 PNJ O6 O6 O 0 1 N N N 51.690 44.454 69.958 0.997 -3.341 0.379 O6 PNJ 18 PNJ O7 O7 O -1 1 N N N 56.942 38.677 67.668 -5.298 -1.421 -0.921 O7 PNJ 19 PNJ N2 N2 N 0 1 N N N 49.711 39.428 73.007 2.406 2.858 -0.584 N2 PNJ 20 PNJ O8 O8 O 0 1 N N N 55.029 38.406 66.127 -6.068 0.187 0.208 O8 PNJ 21 PNJ H8 H8 H 0 1 N N N 51.522 39.989 68.876 -2.105 2.652 1.422 H8 PNJ 22 PNJ H9 H9 H 0 1 N N N 53.100 39.400 67.091 -4.386 1.790 1.087 H9 PNJ 23 PNJ H11 H11 H 0 1 N N N 56.149 38.684 70.020 -2.829 -1.460 -1.195 H11 PNJ 24 PNJ H12 H12 H 0 1 N N N 54.554 39.274 71.835 -0.546 -0.600 -0.871 H12 PNJ 25 PNJ H1 H1 H 0 1 N N N 50.228 40.004 70.438 0.957 0.694 -1.178 H1 PNJ 26 PNJ H2 H2 H 0 1 N N N 50.946 41.079 73.194 2.635 1.711 1.162 H2 PNJ 27 PNJ H5 H5 H 0 1 N N N 49.232 42.202 69.969 2.077 -1.462 -1.105 H5 PNJ 28 PNJ H61 H61C H 0 1 N N N 50.628 43.515 68.453 3.061 -3.280 0.323 H61 PNJ 29 PNJ H62 H62C H 0 1 N N N 49.695 44.674 69.461 2.310 -2.521 1.747 H62 PNJ 30 PNJ H4 H4 H 0 1 N N N 50.592 43.419 72.422 3.808 -0.548 1.239 H4 PNJ 31 PNJ HO6 H6 H 0 1 N Y N 51.964 45.166 69.392 0.912 -4.209 0.797 HO6 PNJ 32 PNJ HO4 HA H 0 1 N Y N 48.524 44.378 72.775 4.693 -2.356 -0.047 HO4 PNJ 33 PNJ H3 H3 H 0 1 N N N 48.197 41.550 71.990 3.468 0.615 -1.565 H3 PNJ 34 PNJ HO3 HB H 0 1 N Y N 48.362 41.449 74.317 5.627 0.905 -0.575 HO3 PNJ 35 PNJ HN2 H21N H 0 1 N N N 49.272 39.535 73.899 1.654 3.423 -0.218 HN2 PNJ 36 PNJ H22N H22N H 0 0 N N N 49.060 39.029 72.361 3.289 3.342 -0.516 H22N PNJ 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNJ C8 C9 SING Y N 1 PNJ C8 C7 DOUB Y N 2 PNJ C9 C10 DOUB Y N 3 PNJ C10 N1 SING N N 4 PNJ C10 C11 SING Y N 5 PNJ N1 O8 DOUB N N 6 PNJ N1 O7 SING N N 7 PNJ C11 C12 DOUB Y N 8 PNJ C12 C7 SING Y N 9 PNJ C7 O1 SING N N 10 PNJ O1 C1 SING N N 11 PNJ C1 O5 SING N N 12 PNJ C1 C2 SING N N 13 PNJ O5 C5 SING N N 14 PNJ C5 C6 SING N N 15 PNJ C5 C4 SING N N 16 PNJ C6 O6 SING N N 17 PNJ C4 O4 SING N N 18 PNJ C4 C3 SING N N 19 PNJ C3 O3 SING N N 20 PNJ C3 C2 SING N N 21 PNJ C2 N2 SING N N 22 PNJ C8 H8 SING N N 23 PNJ C9 H9 SING N N 24 PNJ C11 H11 SING N N 25 PNJ C12 H12 SING N N 26 PNJ C1 H1 SING N N 27 PNJ C2 H2 SING N N 28 PNJ C5 H5 SING N N 29 PNJ C6 H61 SING N N 30 PNJ C6 H62 SING N N 31 PNJ C4 H4 SING N N 32 PNJ O6 HO6 SING N N 33 PNJ O4 HO4 SING N N 34 PNJ C3 H3 SING N N 35 PNJ O3 HO3 SING N N 36 PNJ N2 HN2 SING N N 37 PNJ N2 H22N SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNJ InChI InChI 1.03 "InChI=1S/C12H16N2O7/c13-9-11(17)10(16)8(5-15)21-12(9)20-7-3-1-6(2-4-7)14(18)19/h1-4,8-12,15-17H,5,13H2/t8-,9-,10-,11-,12-/m1/s1" PNJ InChIKey InChI 1.03 ZRNBGANFPXCMFT-LZQZFOIKSA-N PNJ SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1Oc2ccc(cc2)[N+]([O-])=O" PNJ SMILES CACTVS 3.385 "N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2ccc(cc2)[N+]([O-])=O" PNJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)N" PNJ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)N" # _pdbx_chem_comp_identifier.comp_id PNJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{R},6~{S})-5-azanyl-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support PNJ "CARBOHYDRATE ISOMER" D PDB ? PNJ "CARBOHYDRATE RING" pyranose PDB ? PNJ "CARBOHYDRATE ANOMER" beta PDB ? PNJ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNJ "Create component" 2008-08-05 EBI PNJ "Modify aromatic_flag" 2011-06-04 RCSB PNJ "Modify descriptor" 2011-06-04 RCSB PNJ "Other modification" 2019-10-16 PDBE PNJ "Other modification" 2020-07-03 RCSB PNJ "Modify name" 2020-07-17 RCSB PNJ "Modify synonyms" 2020-07-17 RCSB PNJ "Modify internal type" 2020-07-17 RCSB PNJ "Modify linking type" 2020-07-17 RCSB PNJ "Modify atom id" 2020-07-17 RCSB PNJ "Modify component atom id" 2020-07-17 RCSB PNJ "Modify leaving atom flag" 2020-07-17 RCSB ##