data_PNV # _chem_comp.id PNV _chem_comp.name "(2S,5R,6R)-3,3-DIMETHYL-7-OXO-6-(2-PHENOXYACETAMIDO)-4-THIA-1- AZABICYCLO(3.2.0)HEPTANE-2-CARBOXYLIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PENICILLIN V" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-11-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.390 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2Z71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNV C24 C1 C 0 1 Y N N 13.666 52.150 33.119 6.110 0.731 0.169 C24 PNV 1 PNV C23 C2 C 0 1 Y N N 12.534 51.925 32.336 7.256 0.016 0.460 C23 PNV 2 PNV C22 C3 C 0 1 Y N N 12.010 52.958 31.571 7.183 -1.343 0.701 C22 PNV 3 PNV C21 C4 C 0 1 Y N N 12.609 54.212 31.594 5.962 -1.991 0.651 C21 PNV 4 PNV C20 C5 C 0 1 Y N N 13.744 54.433 32.376 4.813 -1.282 0.361 C20 PNV 5 PNV C19 C6 C 0 1 Y N N 14.287 53.403 33.153 4.884 0.083 0.119 C19 PNV 6 PNV O1 O1 O 0 1 N N N 15.410 53.669 33.922 3.755 0.784 -0.161 O1 PNV 7 PNV C2 C7 C 0 1 N N N 15.949 52.860 34.983 2.528 0.052 -0.196 C2 PNV 8 PNV C3 C8 C 0 1 N N N 15.270 52.991 36.341 1.393 0.988 -0.520 C3 PNV 9 PNV O18 O2 O 0 1 N N N 15.511 53.932 37.073 1.612 2.167 -0.702 O18 PNV 10 PNV N4 N1 N 0 1 N N N 14.448 51.969 36.616 0.133 0.516 -0.606 N4 PNV 11 PNV C5 C9 C 0 1 N N R 13.559 51.550 37.726 -0.970 1.426 -0.920 C5 PNV 12 PNV C6 C10 C 0 1 N N N 12.677 52.458 38.537 -1.823 1.769 0.276 C6 PNV 13 PNV O17 O3 O 0 1 N N N 11.673 53.112 38.265 -1.690 2.463 1.263 O17 PNV 14 PNV C8 C11 C 0 1 N N R 14.286 51.198 39.059 -2.178 0.724 -1.534 C8 PNV 15 PNV N7 N2 N 0 1 N N N 13.380 52.184 39.623 -2.804 0.970 -0.223 N7 PNV 16 PNV S11 S1 S 0 1 N N N 15.707 52.027 39.704 -2.018 -1.097 -1.654 S11 PNV 17 PNV C10 C12 C 0 1 N N N 15.047 52.466 41.301 -3.333 -1.445 -0.410 C10 PNV 18 PNV C12 C13 C 0 1 N N N 15.319 51.315 42.283 -4.723 -1.415 -1.048 C12 PNV 19 PNV C15 C14 C 0 1 N N N 15.766 53.708 41.830 -3.082 -2.772 0.308 C15 PNV 20 PNV C9 C15 C 0 1 N N S 13.544 52.745 40.977 -3.123 -0.240 0.544 C9 PNV 21 PNV C13 C16 C 0 1 N N N 12.466 52.393 41.995 -4.383 -0.008 1.338 C13 PNV 22 PNV O14 O4 O 0 1 N N N 12.617 51.447 42.807 -4.673 -0.801 2.382 O14 PNV 23 PNV O16 O5 O 0 1 N N N 11.421 53.092 41.998 -5.131 0.891 1.036 O16 PNV 24 PNV H1 H1 H 0 1 N N N 14.071 51.342 33.710 6.168 1.793 -0.014 H1 PNV 25 PNV H2 H2 H 0 1 N N N 12.067 50.951 32.325 8.211 0.520 0.499 H2 PNV 26 PNV H3 H3 H 0 1 N N N 11.137 52.787 30.958 8.080 -1.900 0.927 H3 PNV 27 PNV H4 H4 H 0 1 N N N 12.195 55.017 31.005 5.907 -3.053 0.839 H4 PNV 28 PNV H5 H5 H 0 1 N N N 14.208 55.408 32.382 3.860 -1.788 0.322 H5 PNV 29 PNV H6 H6 H 0 1 N N N 15.877 51.807 34.672 2.589 -0.723 -0.960 H6 PNV 30 PNV H7 H7 H 0 1 N N N 17.007 53.133 35.109 2.353 -0.410 0.776 H7 PNV 31 PNV H8 H8 H 0 1 N N N 14.429 51.307 35.867 -0.042 -0.427 -0.460 H8 PNV 32 PNV H9 H9 H 0 1 N N N 12.975 50.673 37.410 -0.646 2.301 -1.485 H9 PNV 33 PNV H10 H10 H 0 1 N N N 14.204 50.155 39.400 -2.632 1.216 -2.394 H10 PNV 34 PNV H11 H11 H 0 1 N N N 14.916 51.574 43.273 -4.788 -2.188 -1.814 H11 PNV 35 PNV H12 H12 H 0 1 N N N 14.832 50.399 41.918 -5.478 -1.599 -0.283 H12 PNV 36 PNV H13 H13 H 0 1 N N N 16.403 51.148 42.361 -4.895 -0.439 -1.501 H13 PNV 37 PNV H14 H14 H 0 1 N N N 15.357 53.977 42.815 -2.110 -2.742 0.799 H14 PNV 38 PNV H15 H15 H 0 1 N N N 16.841 53.497 41.925 -3.861 -2.935 1.052 H15 PNV 39 PNV H16 H16 H 0 1 N N N 15.617 54.544 41.131 -3.097 -3.586 -0.418 H16 PNV 40 PNV H17 H17 H 0 1 N N N 13.481 53.837 40.856 -2.303 -0.460 1.227 H17 PNV 41 PNV H18 H18 H 0 1 N N N 11.850 51.382 43.364 -5.492 -0.613 2.860 H18 PNV 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNV C22 C21 DOUB Y N 1 PNV C22 C23 SING Y N 2 PNV C21 C20 SING Y N 3 PNV C23 C24 DOUB Y N 4 PNV C20 C19 DOUB Y N 5 PNV C24 C19 SING Y N 6 PNV C19 O1 SING N N 7 PNV O1 C2 SING N N 8 PNV C2 C3 SING N N 9 PNV C3 N4 SING N N 10 PNV C3 O18 DOUB N N 11 PNV N4 C5 SING N N 12 PNV C5 C6 SING N N 13 PNV C5 C8 SING N N 14 PNV O17 C6 DOUB N N 15 PNV C6 N7 SING N N 16 PNV C8 N7 SING N N 17 PNV C8 S11 SING N N 18 PNV N7 C9 SING N N 19 PNV S11 C10 SING N N 20 PNV C9 C10 SING N N 21 PNV C9 C13 SING N N 22 PNV C10 C15 SING N N 23 PNV C10 C12 SING N N 24 PNV C13 O16 DOUB N N 25 PNV C13 O14 SING N N 26 PNV C24 H1 SING N N 27 PNV C23 H2 SING N N 28 PNV C22 H3 SING N N 29 PNV C21 H4 SING N N 30 PNV C20 H5 SING N N 31 PNV C2 H6 SING N N 32 PNV C2 H7 SING N N 33 PNV N4 H8 SING N N 34 PNV C5 H9 SING N N 35 PNV C8 H10 SING N N 36 PNV C12 H11 SING N N 37 PNV C12 H12 SING N N 38 PNV C12 H13 SING N N 39 PNV C15 H14 SING N N 40 PNV C15 H15 SING N N 41 PNV C15 H16 SING N N 42 PNV C9 H17 SING N N 43 PNV O14 H18 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNV SMILES ACDLabs 12.01 "c1c(cccc1)OCC(NC2C(N3C2SC(C)(C)C3C(=O)O)=O)=O" PNV InChI InChI 1.03 "InChI=1S/C16H18N2O5S/c1-16(2)12(15(21)22)18-13(20)11(14(18)24-16)17-10(19)8-23-9-6-4-3-5-7-9/h3-7,11-12,14H,8H2,1-2H3,(H,17,19)(H,21,22)/t11-,12+,14-/m1/s1" PNV InChIKey InChI 1.03 BPLBGHOLXOTWMN-MBNYWOFBSA-N PNV SMILES_CANONICAL CACTVS 3.385 "CC1(C)S[C@@H]2[C@H](NC(=O)COc3ccccc3)C(=O)N2[C@H]1C(O)=O" PNV SMILES CACTVS 3.385 "CC1(C)S[CH]2[CH](NC(=O)COc3ccccc3)C(=O)N2[CH]1C(O)=O" PNV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)COc3ccccc3)C(=O)O)C" PNV SMILES "OpenEye OEToolkits" 2.0.6 "CC1(C(N2C(S1)C(C2=O)NC(=O)COc3ccccc3)C(=O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PNV "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-[(phenoxyacetyl)amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" PNV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},5~{R},6~{R})-3,3-dimethyl-7-oxidanylidene-6-(2-phenoxyethanoylamino)-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNV "Create component" 2005-11-14 RCSB PNV "Modify descriptor" 2011-06-04 RCSB PNV "Modify model coordinates code" 2016-11-02 RCSB PNV "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PNV _pdbx_chem_comp_synonyms.name "PENICILLIN V" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##