data_PPU # _chem_comp.id PPU _chem_comp.name "PUROMYCIN-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C22 H30 N7 O8 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-07-31 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 551.489 _chem_comp.one_letter_code A _chem_comp.three_letter_code PPU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FG0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PPU P P P 0 1 N N N 73.240 115.864 107.069 -5.287 -0.198 -0.192 P PPU 1 PPU OP1 O1P O 0 1 N N N 72.028 115.645 107.899 -5.460 1.127 -0.826 OP1 PPU 2 PPU OP2 O2P O 0 1 N N N 73.888 114.709 106.410 -6.451 -1.190 -0.694 OP2 PPU 3 PPU OP3 O3P O 0 1 N Y N 73.919 116.778 107.762 -5.369 -0.042 1.408 OP3 PPU 4 PPU N N N 0 1 N N N 71.715 116.941 100.542 2.379 1.704 3.727 N PPU 5 PPU CA CA C 0 1 N N S 71.306 117.810 101.704 1.320 0.752 3.365 CA PPU 6 PPU C C C 0 1 N N N 72.137 117.530 102.914 0.712 1.155 2.046 C PPU 7 PPU O O O 0 1 N N N 72.521 116.441 103.266 0.681 2.324 1.724 O PPU 8 PPU CB CB C 0 1 N N N 69.745 117.744 101.936 0.238 0.756 4.447 CB PPU 9 PPU CG CG C 0 1 Y N N 69.003 118.051 100.655 0.846 0.354 5.766 CG PPU 10 PPU CD1 CD1 C 0 1 Y N N 68.042 119.076 100.531 1.368 1.318 6.608 CD1 PPU 11 PPU CD2 CD2 C 0 1 Y N N 69.306 117.321 99.498 0.882 -0.979 6.131 CD2 PPU 12 PPU CE1 CE1 C 0 1 Y N N 67.418 119.340 99.314 1.925 0.951 7.818 CE1 PPU 13 PPU CE2 CE2 C 0 1 Y N N 68.678 117.611 98.259 1.443 -1.351 7.337 CE2 PPU 14 PPU CZ CZ C 0 1 Y N N 67.758 118.596 98.148 1.962 -0.385 8.187 CZ PPU 15 PPU OC OC O 0 1 N N N 67.097 118.962 97.021 2.510 -0.748 9.377 OC PPU 16 PPU CM CM C 0 1 N N N 67.353 118.222 95.838 2.399 -2.170 9.466 CM PPU 17 PPU "O5'" O5* O 0 1 N N N 73.351 116.043 106.386 -3.852 -0.805 -0.599 "O5'" PPU 18 PPU "C5'" C5* C 0 1 N N N 72.240 116.792 105.940 -2.866 0.114 -0.128 "C5'" PPU 19 PPU "C4'" C4* C 0 1 N N S 72.534 118.252 105.891 -1.472 -0.405 -0.485 "C4'" PPU 20 PPU "O4'" O4* O 0 1 N N N 73.296 118.613 107.077 -1.327 -0.514 -1.920 "O4'" PPU 21 PPU "C3'" C3* C 0 1 N N S 73.435 118.700 104.734 -0.386 0.607 -0.058 "C3'" PPU 22 PPU "N3'" N3* N 0 1 N N N 72.417 118.765 103.652 0.203 0.216 1.223 "N3'" PPU 23 PPU "C2'" C2* C 0 1 N N R 74.095 119.944 105.320 0.667 0.531 -1.185 "C2'" PPU 24 PPU "O2'" O2* O 0 1 N N N 73.280 121.093 105.227 1.927 0.103 -0.665 "O2'" PPU 25 PPU "C1'" C1* C 0 1 N N R 74.223 119.635 106.776 0.096 -0.520 -2.162 "C1'" PPU 26 PPU N9 N9 N 0 1 Y N N 75.581 119.163 107.151 0.382 -0.137 -3.547 N9 PPU 27 PPU C8 C8 C 0 1 Y N N 76.016 117.882 107.221 -0.408 0.627 -4.352 C8 PPU 28 PPU N7 N7 N 0 1 Y N N 77.235 117.740 107.545 0.150 0.769 -5.519 N7 PPU 29 PPU C5 C5 C 0 1 Y N N 77.675 119.045 107.731 1.332 0.106 -5.537 C5 PPU 30 PPU C6 C6 C 0 1 Y N N 78.937 119.525 108.099 2.341 -0.088 -6.494 C6 PPU 31 PPU N6 N6 N 0 1 N N N 80.003 118.787 108.350 2.236 0.467 -7.757 N6 PPU 32 PPU C9 C9 C 0 1 N N N 79.975 117.339 108.275 3.444 0.073 -8.494 C9 PPU 33 PPU C10 C10 C 0 1 N N N 81.273 119.388 108.731 1.104 -0.195 -8.417 C10 PPU 34 PPU N1 N1 N 0 1 Y N N 78.964 120.898 108.189 3.399 -0.820 -6.159 N1 PPU 35 PPU C2 C2 C 0 1 Y N N 77.886 121.675 107.941 3.508 -1.354 -4.957 C2 PPU 36 PPU C4 C4 C 0 1 Y N N 76.663 119.941 107.500 1.497 -0.479 -4.270 C4 PPU 37 PPU N3 N3 N 0 1 Y N N 76.698 121.301 107.582 2.588 -1.198 -4.028 N3 PPU 38 PPU HOP2 2HOP H 0 0 N N N 74.663 114.849 105.879 -7.292 -0.791 -0.431 HOP2 PPU 39 PPU HOP3 3HOP H 0 0 N N N 74.694 116.918 107.231 -5.251 -0.926 1.781 HOP3 PPU 40 PPU HN1 1HN H 0 1 N N N 71.147 117.132 99.716 1.942 2.611 3.795 HN1 PPU 41 PPU HN2 2HN H 0 1 N N N 71.693 115.951 100.789 2.683 1.458 4.657 HN2 PPU 42 PPU HA HA H 0 1 N N N 71.519 118.876 101.458 1.744 -0.247 3.279 HA PPU 43 PPU HB1 1HB H 0 1 N N N 69.432 116.766 102.371 -0.546 0.050 4.178 HB1 PPU 44 PPU HB2 2HB H 0 1 N N N 69.422 118.409 102.770 -0.185 1.756 4.533 HB2 PPU 45 PPU HD1 HD1 H 0 1 N N N 67.771 119.687 101.408 1.339 2.358 6.321 HD1 PPU 46 PPU HD2 HD2 H 0 1 N N N 70.048 116.507 99.563 0.474 -1.730 5.471 HD2 PPU 47 PPU HE1 HE1 H 0 1 N N N 66.656 120.136 99.273 2.332 1.705 8.476 HE1 PPU 48 PPU HE2 HE2 H 0 1 N N N 68.915 117.046 97.341 1.470 -2.392 7.622 HE2 PPU 49 PPU HM1 1HM H 0 1 N N N 66.809 118.522 94.911 2.827 -2.509 10.408 HM1 PPU 50 PPU HM2 2HM H 0 1 N N N 68.449 118.218 95.636 1.348 -2.455 9.420 HM2 PPU 51 PPU HM3 3HM H 0 1 N N N 67.172 117.139 96.035 2.936 -2.629 8.636 HM3 PPU 52 PPU "H5'" 1H5* H 0 1 N N N 71.870 116.420 104.955 -2.950 0.215 0.953 "H5'" PPU 53 PPU "H5''" 2H5* H 0 0 N N N 71.336 116.581 106.558 -3.022 1.086 -0.597 "H5''" PPU 54 PPU "H4'" H4* H 0 1 N N N 71.533 118.733 105.788 -1.295 -1.371 -0.012 "H4'" PPU 55 PPU "H3'" H3* H 0 1 N N N 74.291 118.121 104.314 -0.805 1.611 0.006 "H3'" PPU 56 PPU "HN'3" 3HN* H 0 0 N N N 71.926 119.629 103.423 0.228 -0.718 1.481 "HN'3" PPU 57 PPU "H2'" H2* H 0 1 N N N 75.046 120.158 104.780 0.767 1.497 -1.680 "H2'" PPU 58 PPU "HO2'" *HO2 H 0 0 N N N 73.691 121.867 105.592 2.542 0.074 -1.410 "HO2'" PPU 59 PPU "H1'" H1* H 0 1 N N N 74.029 120.572 107.347 0.513 -1.504 -1.947 "H1'" PPU 60 PPU H8 H8 H 0 1 N N N 75.400 116.988 107.021 -1.358 1.052 -4.065 H8 PPU 61 PPU H91 1H9 H 0 1 N N N 80.875 116.715 108.486 3.408 0.489 -9.501 H91 PPU 62 PPU H92 2H9 H 0 1 N N N 79.152 116.981 108.936 4.325 0.451 -7.976 H92 PPU 63 PPU H93 3H9 H 0 1 N N N 79.600 117.059 107.262 3.496 -1.014 -8.552 H93 PPU 64 PPU H101 1H10 H 0 0 N N N 82.173 118.764 108.942 0.980 0.211 -9.421 H101 PPU 65 PPU H102 2H10 H 0 0 N N N 81.548 120.132 107.948 1.296 -1.266 -8.480 H102 PPU 66 PPU H103 3H10 H 0 0 N N N 81.091 120.040 109.616 0.195 -0.022 -7.841 H103 PPU 67 PPU H2 H2 H 0 1 N N N 77.990 122.768 108.046 4.384 -1.942 -4.727 H2 PPU 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PPU P OP1 DOUB N N 1 PPU P OP2 SING N N 2 PPU P OP3 SING N N 3 PPU P "O5'" SING N N 4 PPU OP2 HOP2 SING N N 5 PPU OP3 HOP3 SING N N 6 PPU N CA SING N N 7 PPU N HN1 SING N N 8 PPU N HN2 SING N N 9 PPU CA C SING N N 10 PPU CA CB SING N N 11 PPU CA HA SING N N 12 PPU C O DOUB N N 13 PPU C "N3'" SING N N 14 PPU CB CG SING N N 15 PPU CB HB1 SING N N 16 PPU CB HB2 SING N N 17 PPU CG CD1 DOUB Y N 18 PPU CG CD2 SING Y N 19 PPU CD1 CE1 SING Y N 20 PPU CD1 HD1 SING N N 21 PPU CD2 CE2 DOUB Y N 22 PPU CD2 HD2 SING N N 23 PPU CE1 CZ DOUB Y N 24 PPU CE1 HE1 SING N N 25 PPU CE2 CZ SING Y N 26 PPU CE2 HE2 SING N N 27 PPU CZ OC SING N N 28 PPU OC CM SING N N 29 PPU CM HM1 SING N N 30 PPU CM HM2 SING N N 31 PPU CM HM3 SING N N 32 PPU "O5'" "C5'" SING N N 33 PPU "C5'" "C4'" SING N N 34 PPU "C5'" "H5'" SING N N 35 PPU "C5'" "H5''" SING N N 36 PPU "C4'" "O4'" SING N N 37 PPU "C4'" "C3'" SING N N 38 PPU "C4'" "H4'" SING N N 39 PPU "O4'" "C1'" SING N N 40 PPU "C3'" "N3'" SING N N 41 PPU "C3'" "C2'" SING N N 42 PPU "C3'" "H3'" SING N N 43 PPU "N3'" "HN'3" SING N N 44 PPU "C2'" "O2'" SING N N 45 PPU "C2'" "C1'" SING N N 46 PPU "C2'" "H2'" SING N N 47 PPU "O2'" "HO2'" SING N N 48 PPU "C1'" N9 SING N N 49 PPU "C1'" "H1'" SING N N 50 PPU N9 C8 SING Y N 51 PPU N9 C4 SING Y N 52 PPU C8 N7 DOUB Y N 53 PPU C8 H8 SING N N 54 PPU N7 C5 SING Y N 55 PPU C5 C6 DOUB Y N 56 PPU C5 C4 SING Y N 57 PPU C6 N6 SING N N 58 PPU C6 N1 SING Y N 59 PPU N6 C9 SING N N 60 PPU N6 C10 SING N N 61 PPU C9 H91 SING N N 62 PPU C9 H92 SING N N 63 PPU C9 H93 SING N N 64 PPU C10 H101 SING N N 65 PPU C10 H102 SING N N 66 PPU C10 H103 SING N N 67 PPU N1 C2 DOUB Y N 68 PPU C2 N3 SING Y N 69 PPU C2 H2 SING N N 70 PPU C4 N3 DOUB Y N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PPU SMILES ACDLabs 10.04 "O=P(O)(O)OCC4OC(n2cnc1c2ncnc1N(C)C)C(O)C4NC(=O)C(N)Cc3ccc(OC)cc3" PPU SMILES_CANONICAL CACTVS 3.341 "COc1ccc(C[C@H](N)C(=O)N[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(O)=O)n3cnc4c(ncnc34)N(C)C)cc1" PPU SMILES CACTVS 3.341 "COc1ccc(C[CH](N)C(=O)N[CH]2[CH](O)[CH](O[CH]2CO[P](O)(O)=O)n3cnc4c(ncnc34)N(C)C)cc1" PPU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)NC(=O)[C@H](Cc4ccc(cc4)OC)N)O" PPU SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)NC(=O)C(Cc4ccc(cc4)OC)N)O" PPU InChI InChI 1.03 "InChI=1S/C22H30N7O8P/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(30)16(15(37-22)9-36-38(32,33)34)27-21(31)14(23)8-12-4-6-13(35-3)7-5-12/h4-7,10-11,14-16,18,22,30H,8-9,23H2,1-3H3,(H,27,31)(H2,32,33,34)/t14-,15+,16+,18+,22+/m0/s1" PPU InChIKey InChI 1.03 NYICMZBLMICLBS-NVWDDTSBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PPU "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-deoxy-N,N-dimethyl-3'-[(O-methyl-L-tyrosyl)amino]adenosine 5'-(dihydrogen phosphate) ; PPU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4R,5R)-3-[[(2S)-2-amino-3-(4-methoxyphenyl)propanoyl]amino]-5-(6-dimethylaminopurin-9-yl)-4-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PPU "Create component" 2000-07-31 RCSB PPU "Modify descriptor" 2011-06-04 RCSB #