data_PPW # _chem_comp.id PPW _chem_comp.name "7-DEAZA-8-AZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-03-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code G _chem_comp.three_letter_code PPW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1YQL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PPW P P P 0 1 N N N 26.312 24.004 36.907 1.592 -1.245 -4.964 P PPW 1 PPW OP1 O1P O 0 1 N N N 27.422 24.635 36.159 2.575 -0.951 -6.059 OP1 PPW 2 PPW OP2 O2P O 0 1 N N N 26.245 22.526 37.010 0.339 -0.227 -4.868 OP2 PPW 3 PPW "O5'" O5* O 0 1 N N N 24.945 24.531 36.290 2.211 -1.232 -3.468 "O5'" PPW 4 PPW N9 N9 N 0 1 Y N N 20.938 24.093 34.050 1.818 1.923 -0.049 N9 PPW 5 PPW C4 C4 C 0 1 Y N N 20.756 24.269 32.702 1.882 2.957 0.839 C4 PPW 6 PPW N3 N3 N 0 1 N N N 20.685 25.457 32.067 2.228 2.843 2.141 N3 PPW 7 PPW C2 C2 C 0 1 N N N 20.518 25.310 30.767 2.213 3.989 2.785 C2 PPW 8 PPW N2 N2 N 0 1 N N N 20.427 26.391 29.987 2.533 4.082 4.114 N2 PPW 9 PPW N1 N1 N 0 1 N N N 20.427 24.087 30.135 1.866 5.208 2.159 N1 PPW 10 PPW C6 C6 C 0 1 N N N 20.498 22.850 30.769 1.505 5.350 0.813 C6 PPW 11 PPW O6 O6 O 0 1 N N N 20.403 21.810 30.105 1.204 6.407 0.271 O6 PPW 12 PPW C5 C5 C 0 1 Y N N 20.679 22.997 32.170 1.530 4.083 0.135 C5 PPW 13 PPW N8 N8 N 0 1 Y N N 20.954 22.732 34.276 1.445 2.312 -1.288 N8 PPW 14 PPW C7 C7 C 0 1 Y N N 20.809 22.026 33.186 1.271 3.634 -1.167 C7 PPW 15 PPW "C2'" C2* C 0 1 N N N 20.583 24.833 36.415 0.878 -0.312 0.578 "C2'" PPW 16 PPW "C5'" C5* C 0 1 N N N 23.747 24.526 37.055 1.348 -1.500 -2.377 "C5'" PPW 17 PPW "C4'" C4* C 0 1 N N R 22.820 25.612 36.565 2.156 -1.432 -1.088 "C4'" PPW 18 PPW "O4'" O4* O 0 1 N N N 22.495 25.383 35.175 2.678 -0.093 -0.958 "O4'" PPW 19 PPW "C1'" C1* C 0 1 N N R 21.102 25.158 35.029 2.101 0.516 0.211 "C1'" PPW 20 PPW "C3'" C3* C 0 1 N N S 21.483 25.684 37.290 1.309 -1.697 0.152 "C3'" PPW 21 PPW "O3'" O3* O 0 1 N N N 21.039 27.042 37.288 2.127 -2.250 1.180 "O3'" PPW 22 PPW OP3 O3P O 0 1 N Y N ? ? ? 0.886 -2.697 -5.051 OP3 PPW 23 PPW HOP2 2HOP H 0 0 N N N 25.532 22.121 37.490 -0.163 -0.014 -5.684 HOP2 PPW 24 PPW HN21 1HN2 H 0 0 N N N 21.248 26.976 30.145 1.891 4.533 4.723 HN21 PPW 25 PPW HN22 2HN2 H 0 0 N N N 20.298 26.277 28.982 3.396 3.695 4.419 HN22 PPW 26 PPW HN1 HN1 H 0 1 N N N 20.298 24.098 29.123 1.879 6.048 2.730 HN1 PPW 27 PPW H7 H7 H 0 1 N N N 20.799 20.924 33.137 0.964 4.202 -2.034 H7 PPW 28 PPW "H2'" 1H2* H 0 1 N N N 20.562 23.748 36.671 0.008 0.008 -0.009 "H2'" PPW 29 PPW "H2''" 2H2* H 0 0 N N N 19.490 24.995 36.561 0.635 -0.225 1.641 "H2''" PPW 30 PPW "H5'" 1H5* H 0 1 N N N 23.948 24.609 38.149 0.551 -0.756 -2.359 "H5'" PPW 31 PPW "H5''" 2H5* H 0 0 N N N 23.255 23.525 37.056 0.917 -2.495 -2.497 "H5''" PPW 32 PPW "H4'" H4* H 0 1 N N N 23.378 26.560 36.748 3.008 -2.117 -1.157 "H4'" PPW 33 PPW "H1'" H1* H 0 1 N N N 20.520 26.029 34.647 2.853 0.503 1.007 "H1'" PPW 34 PPW "H3'" H3* H 0 1 N N N 21.509 25.340 38.350 0.475 -2.383 -0.018 "H3'" PPW 35 PPW "HO3'" H3T H 0 0 N Y N 21.603 27.575 37.836 2.928 -1.706 1.218 "HO3'" PPW 36 PPW HOP3 3HOP H 0 0 N N N -0.713 -0.405 0.480 0.508 -2.990 -5.907 HOP3 PPW 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PPW P OP1 DOUB N N 1 PPW P OP2 SING N N 2 PPW P "O5'" SING N N 3 PPW P OP3 SING N N 4 PPW OP2 HOP2 SING N N 5 PPW "O5'" "C5'" SING N N 6 PPW N9 C4 SING Y N 7 PPW N9 N8 SING Y N 8 PPW N9 "C1'" SING N N 9 PPW C4 N3 SING N N 10 PPW C4 C5 DOUB Y N 11 PPW N3 C2 DOUB N N 12 PPW C2 N2 SING N N 13 PPW C2 N1 SING N N 14 PPW N2 HN21 SING N N 15 PPW N2 HN22 SING N N 16 PPW N1 C6 SING N N 17 PPW N1 HN1 SING N N 18 PPW C6 O6 DOUB N N 19 PPW C6 C5 SING N N 20 PPW C5 C7 SING Y N 21 PPW N8 C7 DOUB Y N 22 PPW C7 H7 SING N N 23 PPW "C2'" "C1'" SING N N 24 PPW "C2'" "C3'" SING N N 25 PPW "C2'" "H2'" SING N N 26 PPW "C2'" "H2''" SING N N 27 PPW "C5'" "C4'" SING N N 28 PPW "C5'" "H5'" SING N N 29 PPW "C5'" "H5''" SING N N 30 PPW "C4'" "O4'" SING N N 31 PPW "C4'" "C3'" SING N N 32 PPW "C4'" "H4'" SING N N 33 PPW "O4'" "C1'" SING N N 34 PPW "C1'" "H1'" SING N N 35 PPW "C3'" "O3'" SING N N 36 PPW "C3'" "H3'" SING N N 37 PPW "O3'" "HO3'" SING N N 38 PPW OP3 HOP3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PPW SMILES ACDLabs 10.04 "O=C1c2cnn(c2N=C(N)N1)C3OC(C(O)C3)COP(=O)(O)O" PPW SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(ncc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" PPW SMILES CACTVS 3.341 "NC1=Nc2n(ncc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" PPW SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(n(n1)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N" PPW SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(n(n1)C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)N" PPW InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-10-13-8-4(9(17)14-10)2-12-15(8)7-1-5(16)6(22-7)3-21-23(18,19)20/h2,5-7,16H,1,3H2,(H2,18,19,20)(H3,11,13,14,17)/t5-,6+,7+/m0/s1" PPW InChIKey InChI 1.03 KGWPGOYMIMMQGK-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PPW "SYSTEMATIC NAME" ACDLabs 10.04 "6-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" PPW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-amino-4-oxo-5H-pyrazolo[5,4-d]pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PPW "Create component" 2005-03-07 RCSB PPW "Modify descriptor" 2011-06-04 RCSB #