data_PR8 # _chem_comp.id PR8 _chem_comp.name "5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms prolyl-adenylate _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 444.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PR8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IAL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PR8 C C C 0 1 N N N 52.697 84.803 15.521 5.226 -0.212 -0.058 C PR8 1 PR8 N N N 0 1 N N N 53.731 85.930 17.462 7.541 -0.786 -0.653 N PR8 2 PR8 O O O 0 1 N N N 53.501 83.895 15.745 5.683 0.358 0.904 O PR8 3 PR8 P P P 0 1 N N N 51.771 83.467 13.584 3.053 0.898 0.575 P PR8 4 PR8 N1 N1 N 0 1 Y N N 58.016 78.020 8.451 -7.136 -1.963 -0.797 N1 PR8 5 PR8 C2 C2 C 0 1 Y N N 58.029 79.207 7.847 -6.694 -1.010 -1.598 C2 PR8 6 PR8 N3 N3 N 0 1 Y N N 57.234 80.196 8.239 -5.542 -0.403 -1.406 N3 PR8 7 PR8 C4 C4 C 0 1 Y N N 56.388 80.033 9.262 -4.765 -0.733 -0.379 C4 PR8 8 PR8 C5 C5 C 0 1 Y N N 56.356 78.803 9.913 -5.190 -1.742 0.502 C5 PR8 9 PR8 C6 C6 C 0 1 Y N N 57.198 77.782 9.489 -6.428 -2.360 0.255 C6 PR8 10 PR8 N6 N6 N 0 1 N N N 57.194 76.595 10.104 -6.899 -3.359 1.089 N6 PR8 11 PR8 N7 N7 N 0 1 Y N N 55.459 78.890 10.885 -4.228 -1.880 1.445 N7 PR8 12 PR8 C8 C8 C 0 1 Y N N 54.937 80.117 10.850 -3.262 -1.041 1.204 C8 PR8 13 PR8 N9 N9 N 0 1 Y N N 55.495 80.822 9.859 -3.547 -0.311 0.089 N9 PR8 14 PR8 CA CA C 0 1 N N S 52.676 86.058 16.423 6.109 -1.099 -0.898 CA PR8 15 PR8 CB CB C 0 1 N N N 53.028 87.249 15.548 5.954 -2.574 -0.469 CB PR8 16 PR8 CD CD C 0 1 N N N 54.717 86.967 17.153 8.260 -2.014 -1.077 CD PR8 17 PR8 CG CG C 0 1 N N N 54.527 87.293 15.672 7.370 -3.176 -0.587 CG PR8 18 PR8 "C1'" "C1'" C 0 1 N N R 55.167 82.239 9.528 -2.706 0.734 -0.501 "C1'" PR8 19 PR8 O10 O10 O 0 1 N N N 51.775 84.812 14.507 3.931 -0.061 -0.376 O10 PR8 20 PR8 O1P O1P O 0 1 N N N 51.335 82.264 14.326 2.956 0.252 2.046 O1P PR8 21 PR8 "C2'" "C2'" C 0 1 N N R 53.774 82.510 8.918 -3.089 2.118 0.068 "C2'" PR8 22 PR8 "O2'" "O2'" O 0 1 N N N 53.865 83.604 7.995 -3.953 2.809 -0.835 "O2'" PR8 23 PR8 O2P O2P O 0 1 N N N 50.766 83.839 12.371 3.694 2.228 0.661 O2P PR8 24 PR8 "C3'" "C3'" C 0 1 N N S 52.992 83.044 10.081 -1.738 2.857 0.198 "C3'" PR8 25 PR8 "O3'" "O3'" O 0 1 N N N 51.924 83.851 9.572 -1.727 4.027 -0.622 "O3'" PR8 26 PR8 "C4'" "C4'" C 0 1 N N R 54.077 83.930 10.682 -0.699 1.832 -0.309 "C4'" PR8 27 PR8 "O4'" "O4'" O 0 1 N N N 55.200 83.022 10.767 -1.327 0.545 -0.117 "O4'" PR8 28 PR8 "C5'" "C5'" C 0 1 N N N 53.666 84.437 12.060 0.587 1.925 0.515 "C5'" PR8 29 PR8 "O5'" "O5'" O 0 1 N N N 53.238 83.362 12.911 1.573 1.054 -0.041 "O5'" PR8 30 PR8 HN HN H 0 1 N N N 53.348 86.066 18.375 7.835 0.012 -1.197 HN PR8 31 PR8 H2 H2 H 0 1 N N N 58.702 79.369 7.018 -7.301 -0.718 -2.442 H2 PR8 32 PR8 HN6 HN6 H 0 1 N N N 57.861 75.991 9.668 -7.755 -3.778 0.908 HN6 PR8 33 PR8 HN6A HN6A H 0 0 N N N 57.435 76.718 11.067 -6.373 -3.641 1.854 HN6A PR8 34 PR8 H8 H8 H 0 1 N N N 54.177 80.487 11.522 -2.368 -0.939 1.800 H8 PR8 35 PR8 HA HA H 0 1 N N N 51.691 86.176 16.898 5.870 -0.981 -1.955 HA PR8 36 PR8 HB HB H 0 1 N N N 52.703 87.107 14.507 5.602 -2.634 0.560 HB PR8 37 PR8 HBA HBA H 0 1 N N N 52.556 88.177 15.904 5.266 -3.092 -1.137 HBA PR8 38 PR8 HD HD H 0 1 N N N 54.550 87.860 17.773 8.358 -2.042 -2.163 HD PR8 39 PR8 HDA HDA H 0 1 N N N 55.737 86.603 17.344 9.243 -2.061 -0.607 HDA PR8 40 PR8 HG HG H 0 1 N N N 55.021 86.560 15.017 7.712 -3.532 0.384 HG PR8 41 PR8 HGA HGA H 0 1 N N N 54.938 88.278 15.406 7.376 -3.990 -1.313 HGA PR8 42 PR8 "H1'" "H1'" H 0 1 N N N 55.913 82.511 8.767 -2.802 0.729 -1.587 "H1'" PR8 43 PR8 HO1P HO1P H 0 0 N N N 50.532 81.930 13.944 2.545 -0.623 2.065 HO1P PR8 44 PR8 "H2'" "H2'" H 0 1 N N N 53.356 81.622 8.422 -3.561 2.012 1.045 "H2'" PR8 45 PR8 "HO2'" "HO2'" H 0 0 N N N 53.009 83.773 7.618 -4.225 3.685 -0.527 "HO2'" PR8 46 PR8 "H3'" "H3'" H 0 1 N N N 52.539 82.311 10.765 -1.543 3.116 1.238 "H3'" PR8 47 PR8 "HO3'" "HO3'" H 0 0 N N N 51.416 84.199 10.296 -2.401 4.679 -0.385 "HO3'" PR8 48 PR8 "H4'" "H4'" H 0 1 N N N 54.289 84.836 10.095 -0.487 1.997 -1.365 "H4'" PR8 49 PR8 "H5'" "H5'" H 0 1 N N N 54.529 84.936 12.526 0.956 2.951 0.497 "H5'" PR8 50 PR8 "H5'A" "H5'A" H 0 0 N N N 52.835 85.148 11.943 0.381 1.631 1.544 "H5'A" PR8 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PR8 O10 C SING N N 1 PR8 C O DOUB N N 2 PR8 C CA SING N N 3 PR8 CA N SING N N 4 PR8 CD N SING N N 5 PR8 N HN SING N N 6 PR8 O2P P DOUB N N 7 PR8 "O5'" P SING N N 8 PR8 P O1P SING N N 9 PR8 P O10 SING N N 10 PR8 C2 N1 DOUB Y N 11 PR8 N1 C6 SING Y N 12 PR8 C2 N3 SING Y N 13 PR8 C2 H2 SING N N 14 PR8 N3 C4 DOUB Y N 15 PR8 C4 N9 SING Y N 16 PR8 C4 C5 SING Y N 17 PR8 C6 C5 DOUB Y N 18 PR8 C5 N7 SING Y N 19 PR8 C6 N6 SING N N 20 PR8 N6 HN6 SING N N 21 PR8 N6 HN6A SING N N 22 PR8 C8 N7 DOUB Y N 23 PR8 N9 C8 SING Y N 24 PR8 C8 H8 SING N N 25 PR8 "C1'" N9 SING N N 26 PR8 CB CA SING N N 27 PR8 CA HA SING N N 28 PR8 CB CG SING N N 29 PR8 CB HB SING N N 30 PR8 CB HBA SING N N 31 PR8 CG CD SING N N 32 PR8 CD HD SING N N 33 PR8 CD HDA SING N N 34 PR8 CG HG SING N N 35 PR8 CG HGA SING N N 36 PR8 "C2'" "C1'" SING N N 37 PR8 "C1'" "O4'" SING N N 38 PR8 "C1'" "H1'" SING N N 39 PR8 O1P HO1P SING N N 40 PR8 "O2'" "C2'" SING N N 41 PR8 "C2'" "C3'" SING N N 42 PR8 "C2'" "H2'" SING N N 43 PR8 "O2'" "HO2'" SING N N 44 PR8 "O3'" "C3'" SING N N 45 PR8 "C3'" "C4'" SING N N 46 PR8 "C3'" "H3'" SING N N 47 PR8 "O3'" "HO3'" SING N N 48 PR8 "C4'" "O4'" SING N N 49 PR8 "C4'" "C5'" SING N N 50 PR8 "C4'" "H4'" SING N N 51 PR8 "C5'" "O5'" SING N N 52 PR8 "C5'" "H5'" SING N N 53 PR8 "C5'" "H5'A" SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PR8 SMILES ACDLabs 11.02 "O=P(OC(=O)C1NCCC1)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O" PR8 SMILES_CANONICAL CACTVS 3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)[C@@H]4CCCN4)[C@@H](O)[C@H]3O" PR8 SMILES CACTVS 3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)[CH]4CCCN4)[CH](O)[CH]3O" PR8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OC(=O)[C@@H]4CCCN4)O)O)N" PR8 SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)C4CCCN4)O)O)N" PR8 InChI InChI 1.03 "InChI=1S/C15H21N6O8P/c16-12-9-13(19-5-18-12)21(6-20-9)14-11(23)10(22)8(28-14)4-27-30(25,26)29-15(24)7-2-1-3-17-7/h5-8,10-11,14,17,22-23H,1-4H2,(H,25,26)(H2,16,18,19)/t7-,8+,10+,11+,14+/m0/s1" PR8 InChIKey InChI 1.03 KQFKHTAASHMYDJ-TWBCTODHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PR8 "SYSTEMATIC NAME" ACDLabs 11.02 "5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine" PR8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-pyrrolidine-2-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PR8 "Create component" 2009-07-16 RCSB PR8 "Modify aromatic_flag" 2011-06-04 RCSB PR8 "Modify descriptor" 2011-06-04 RCSB PR8 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PR8 _pdbx_chem_comp_synonyms.name prolyl-adenylate _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##