data_PR9 # _chem_comp.id PR9 _chem_comp.name D-PROLINAMIDE _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N2 O" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 114.146 _chem_comp.one_letter_code P _chem_comp.three_letter_code PR9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WRW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PR9 O O O 0 1 N N N N N N -15.413 8.415 13.032 1.533 -1.054 -0.752 O PR9 1 PR9 C C C 0 1 N N N N N N -15.165 7.444 13.753 1.386 -0.113 -0.002 C PR9 2 PR9 CA CA C 0 1 N N R N N N -14.318 7.645 15.012 0.036 0.159 0.610 CA PR9 3 PR9 NXT NXT N 0 1 N N N N N N -15.657 6.239 13.404 2.431 0.687 0.288 NXT PR9 4 PR9 N N N 0 1 N N N N N N -13.541 6.449 15.418 -0.816 -1.046 0.506 N PR9 5 PR9 CD CD C 0 1 N N N N N N -14.330 5.564 16.299 -2.197 -0.546 0.279 CD PR9 6 PR9 CG CG C 0 1 N N N N N N -15.362 6.531 16.897 -1.987 0.651 -0.681 CG PR9 7 PR9 CB CB C 0 1 N N N N N N -15.223 7.909 16.220 -0.675 1.284 -0.164 CB PR9 8 PR9 H H H 0 1 N N N N N N -13.282 5.939 14.598 -0.516 -1.636 -0.255 H PR9 9 PR9 HA HA H 0 1 N N N N N N -13.645 8.476 14.752 0.154 0.445 1.656 HA PR9 10 PR9 HD1C HD1C H 0 0 N N N N N N -14.809 4.748 15.738 -2.811 -1.314 -0.191 HD1C PR9 11 PR9 HD2C HD2C H 0 0 N N N N N N -13.723 5.049 17.058 -2.645 -0.217 1.217 HD2C PR9 12 PR9 HB1C HB1C H 0 0 N N N N N N -14.773 8.645 16.902 -0.894 2.120 0.499 HB1C PR9 13 PR9 HB2C HB2C H 0 0 N N N N N N -16.196 8.333 15.930 -0.059 1.615 -1.001 HB2C PR9 14 PR9 HG1C HG1C H 0 0 N N N N N N -15.186 6.633 17.978 -1.870 0.306 -1.709 HG1C PR9 15 PR9 HG2C HG2C H 0 0 N N N N N N -16.375 6.138 16.728 -2.815 1.356 -0.605 HG2C PR9 16 PR9 HXT1 HXT1 H 0 0 N N N N N N -15.375 5.559 14.081 3.301 0.510 -0.103 HXT1 PR9 17 PR9 HXT2 HXT2 H 0 0 N N N N N N -16.216 6.054 12.596 2.313 1.440 0.889 HXT2 PR9 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PR9 N CA SING N N 1 PR9 N CD SING N N 2 PR9 CA CB SING N N 3 PR9 CA C SING N N 4 PR9 CB CG SING N N 5 PR9 CG CD SING N N 6 PR9 C O DOUB N N 7 PR9 C NXT SING N N 8 PR9 N H SING N N 9 PR9 CA HA SING N N 10 PR9 CD HD1C SING N N 11 PR9 CD HD2C SING N N 12 PR9 CB HB1C SING N N 13 PR9 CB HB2C SING N N 14 PR9 CG HG1C SING N N 15 PR9 CG HG2C SING N N 16 PR9 NXT HXT1 SING N N 17 PR9 NXT HXT2 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PR9 SMILES ACDLabs 10.04 "O=C(N)C1NCCC1" PR9 SMILES_CANONICAL CACTVS 3.352 "NC(=O)[C@H]1CCCN1" PR9 SMILES CACTVS 3.352 "NC(=O)[CH]1CCCN1" PR9 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1C[C@@H](NC1)C(=O)N" PR9 SMILES "OpenEye OEToolkits" 1.6.1 "C1CC(NC1)C(=O)N" PR9 InChI InChI 1.03 "InChI=1S/C5H10N2O/c6-5(8)4-2-1-3-7-4/h4,7H,1-3H2,(H2,6,8)/t4-/m1/s1" PR9 InChIKey InChI 1.03 VLJNHYLEOZPXFW-SCSAIBSYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PR9 "SYSTEMATIC NAME" ACDLabs 10.04 D-prolinamide PR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PR9 "Create component" 2009-09-02 EBI PR9 "Modify descriptor" 2011-06-04 RCSB PR9 "Modify PCM" 2024-09-27 PDBE #